Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

3LDD
DownloadVisualize
BU of 3ldd by Molmil
High resolution open MthK pore structure crystallized in 100 mM K+ and further soaked in 99 mM Na+/1 mM K+.
Descriptor: Calcium-gated potassium channel mthK, POTASSIUM ION
Authors:Ye, S.
Deposit date:2010-01-12
Release date:2010-08-11
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (1.45 Å)
Cite:Novel insights into K(+) selectivity from high-resolution structures of an open K(+) channel pore.
Nat.Struct.Mol.Biol., 17, 2010
6X00
DownloadVisualize
BU of 6x00 by Molmil
Structure of DbNA(11) peptides bound to H-2Db MHC-I
Descriptor: Beta-2-microglobulin, Epitope from Neuraminidase Protein (NA-181-191), H-2 class I histocompatibility antigen, ...
Authors:Farenc, C, Rossjohn, J.
Deposit date:2020-05-14
Release date:2020-09-16
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.55 Å)
Cite:Overlapping Peptides Elicit Distinct CD8 + T Cell Responses following Influenza A Virus Infection.
J Immunol., 205, 2020
6WZY
DownloadVisualize
BU of 6wzy by Molmil
Structure of DbNA(10) peptides bound to H-2Db MHC-I
Descriptor: 1,2-ETHANEDIOL, Beta-2-microglobulin, DI(HYDROXYETHYL)ETHER, ...
Authors:Farenc, C, Rossjohn, J.
Deposit date:2020-05-14
Release date:2020-09-16
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Overlapping Peptides Elicit Distinct CD8 + T Cell Responses following Influenza A Virus Infection.
J Immunol., 205, 2020
7R8P
DownloadVisualize
BU of 7r8p by Molmil
Open form of SAOUHSC_02373 in complex with ADP, Mg2+ and Na+
Descriptor: ADENOSINE-5'-DIPHOSPHATE, ATP-grasp domain-containing protein, CHLORIDE ION, ...
Authors:Pederick, J.L, Bruning, J.B.
Deposit date:2021-06-27
Release date:2022-09-14
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (1.37 Å)
Cite:Discovery of an ʟ-amino acid ligase implicated in Staphylococcal sulfur amino acid metabolism.
J.Biol.Chem., 298, 2022
7R8Q
DownloadVisualize
BU of 7r8q by Molmil
Closed form of SAOUHSC_02373 in complex with ADP, citrate, Mg2+ and Na+
Descriptor: ADENOSINE-5'-DIPHOSPHATE, ATP-grasp domain-containing protein, CITRIC ACID, ...
Authors:Pederick, J.L, Bruning, J.B.
Deposit date:2021-06-27
Release date:2022-09-14
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2 Å)
Cite:Discovery of an ʟ-amino acid ligase implicated in Staphylococcal sulfur amino acid metabolism.
J.Biol.Chem., 298, 2022
2ZXE
DownloadVisualize
BU of 2zxe by Molmil
Crystal structure of the sodium - potassium pump in the E2.2K+.Pi state
Descriptor: 2-acetamido-2-deoxy-alpha-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose, CHOLESTEROL, ...
Authors:Shinoda, T, Ogawa, H, Cornelius, F, Toyoshima, C.
Deposit date:2008-12-22
Release date:2009-05-19
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Crystal structure of the sodium - potassium pump at 2.4 A resolution
Nature, 459, 2009
5SVT
DownloadVisualize
BU of 5svt by Molmil
Anomalous Cs+ signal reveals the site of Na+ ion entry to the channel pore of the human P2X3 ion channel through the extracellular fenestrations
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, MAGNESIUM ION, P2X purinoceptor 3, ...
Authors:Mansoor, S.E, Lu, W, Oosterheert, W, Shekhar, M, Tajkhorshid, E, Gouaux, E.
Deposit date:2016-08-07
Release date:2016-09-28
Last modified:2020-07-29
Method:X-RAY DIFFRACTION (3.794 Å)
Cite:X-ray structures define human P2X3 receptor gating cycle and antagonist action.
Nature, 538, 2016
6VXV
DownloadVisualize
BU of 6vxv by Molmil
Crystal structure of cyclo-L-Trp-L-Pro-bound cytochrome P450 NasF5053 from Streptomyces sp. NRRL F-5053
Descriptor: (3S,8aS)-3-(1H-indol-3-ylmethyl)hexahydropyrrolo[1,2-a]pyrazine-1,4-dione, CALCIUM ION, PROTOPORPHYRIN IX CONTAINING FE, ...
Authors:Luo, Z, Jia, X, Sun, C, Qu, X, Kobe, B.
Deposit date:2020-02-24
Release date:2020-11-11
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Molecular basis of regio- and stereo-specificity in biosynthesis of bacterial heterodimeric diketopiperazines.
Nat Commun, 11, 2020
3FPH
DownloadVisualize
BU of 3fph by Molmil
Crystal Structure of E81Q mutant of MtNAS in complex with L-Glutamate
Descriptor: GLUTAMIC ACID, Putative uncharacterized protein, SODIUM ION
Authors:Dreyfus, C, Pignol, D, Arnoux, P.
Deposit date:2009-01-05
Release date:2009-10-06
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystallographic snapshots of iterative substrate translocations during nicotianamine synthesis in Archaea
Proc.Natl.Acad.Sci.USA, 106, 2009
7K48
DownloadVisualize
BU of 7k48 by Molmil
Structure of NavAb/Nav1.7-VS2A chimera trapped in the resting state by tarantula toxin m3-Huwentoxin-IV
Descriptor: Maltose/maltodextrin-binding periplasmic protein,Ion transport protein,Sodium channel protein type 9 subunit alpha chimera, Mu-theraphotoxin-Hs2a
Authors:Wisedchaisri, G, Tonggu, L, Gamal El-Din, T.M, McCord, E, Zheng, N, Catterall, W.A.
Deposit date:2020-09-15
Release date:2020-12-02
Last modified:2021-01-20
Method:ELECTRON MICROSCOPY (3.6 Å)
Cite:Structural Basis for High-Affinity Trapping of the Na V 1.7 Channel in Its Resting State by Tarantula Toxin.
Mol.Cell, 81, 2021
6VZB
DownloadVisualize
BU of 6vzb by Molmil
Crystal structure of cytochrome P450 NasF5053 S284A-V288A mutant variant from Streptomyces sp. NRRL F-5053 in the cyclo-L-Trp-L-Pro-bound state
Descriptor: (3S,8aS)-3-(1H-indol-3-ylmethyl)hexahydropyrrolo[1,2-a]pyrazine-1,4-dione, PROTOPORPHYRIN IX CONTAINING FE, SODIUM ION, ...
Authors:Luo, Z, Jia, X, Sun, C, Qu, X, Kobe, B.
Deposit date:2020-02-28
Release date:2020-11-11
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.68 Å)
Cite:Molecular basis of regio- and stereo-specificity in biosynthesis of bacterial heterodimeric diketopiperazines.
Nat Commun, 11, 2020
7KRG
DownloadVisualize
BU of 7krg by Molmil
Crystal Structure of Mannitol Dehydrogenase (ChMDH) from Cladosporium herbarum in complex with NADP+ and Na
Descriptor: NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE, NADP-dependent mannitol dehydrogenase, SODIUM ION
Authors:Lee, S.G, Jez, J.M.
Deposit date:2020-11-19
Release date:2022-02-23
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.03797364 Å)
Cite:Biochemical and clinical studies of putative allergens to assess what distinguishes them from other non-allergenic proteins in the same family.
Transgenic Res, 31, 2022
7LQK
DownloadVisualize
BU of 7lqk by Molmil
Crystal structure of the R375A mutant of LeuT
Descriptor: ALANINE, Na(+):neurotransmitter symporter (Snf family), SODIUM ION, ...
Authors:Font, J, Aguilar, J, Galli, A, Ryan, R.
Deposit date:2021-02-13
Release date:2021-05-19
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Psychomotor impairments and therapeutic implications revealed by a mutation associated with infantile Parkinsonism-Dystonia.
Elife, 10, 2021
7LQJ
DownloadVisualize
BU of 7lqj by Molmil
Crystal structure of LeuT bound to L-Alanine
Descriptor: ALANINE, Na(+):neurotransmitter symporter (Snf family), SODIUM ION, ...
Authors:Font, J, Aguilar, J, Galli, A, Ryan, R.
Deposit date:2021-02-13
Release date:2021-05-19
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.144 Å)
Cite:Psychomotor impairments and therapeutic implications revealed by a mutation associated with infantile Parkinsonism-Dystonia.
Elife, 10, 2021
7LQL
DownloadVisualize
BU of 7lql by Molmil
Crystal structure of the R375D mutant of LeuT
Descriptor: ALANINE, Na(+):neurotransmitter symporter (Snf family), SODIUM ION, ...
Authors:Font, J, Aguilar, J, Galli, A, Ryan, R.
Deposit date:2021-02-13
Release date:2021-05-19
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Psychomotor impairments and therapeutic implications revealed by a mutation associated with infantile Parkinsonism-Dystonia.
Elife, 10, 2021
7LW9
DownloadVisualize
BU of 7lw9 by Molmil
Human Exonuclease 5 crystal structure in complex with ssDNA, Sm, and Na
Descriptor: 1,2-ETHANEDIOL, ACETATE ION, DNA (5'-D(*AP*TP*TP*GP*CP*TP*GP*AP*AP*GP*GP*G)-3'), ...
Authors:Tsai, C.L, Tainer, J.A.
Deposit date:2021-02-28
Release date:2021-07-14
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.71 Å)
Cite:EXO5-DNA structure and BLM interactions direct DNA resection critical for ATR-dependent replication restart.
Mol.Cell, 81, 2021
6RF5
DownloadVisualize
BU of 6rf5 by Molmil
Crystal structure of the light-driven sodium pump KR2 in the monomeric form, pH 6.0
Descriptor: EICOSANE, GLYCEROL, RETINAL, ...
Authors:Kovalev, K, Polovinkin, V, Gushchin, I, Borshchevskiy, V, Gordeliy, V.
Deposit date:2019-04-12
Release date:2019-04-24
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structure and mechanisms of sodium-pumping KR2 rhodopsin.
Sci Adv, 5, 2019
6RF6
DownloadVisualize
BU of 6rf6 by Molmil
Crystal structure of the light-driven sodium pump KR2 in the monomeric form, pH 8.0
Descriptor: EICOSANE, RETINAL, SODIUM ION, ...
Authors:Kovalev, K, Polovinkin, V, Gushchin, I, Borshchevskiy, V, Gordeliy, V.
Deposit date:2019-04-12
Release date:2019-04-24
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structure and mechanisms of sodium-pumping KR2 rhodopsin.
Sci Adv, 5, 2019
6RFA
DownloadVisualize
BU of 6rfa by Molmil
Crystal structure of the H30K mutant of the light-driven sodium pump KR2 in the monomeric form, pH 8.0
Descriptor: EICOSANE, GLYCEROL, RETINAL, ...
Authors:Kovalev, K, Polovinkin, V, Gushchin, I, Borshchevskiy, V, Gordeliy, V.
Deposit date:2019-04-12
Release date:2019-04-24
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Structure and mechanisms of sodium-pumping KR2 rhodopsin.
Sci Adv, 5, 2019
6RF9
DownloadVisualize
BU of 6rf9 by Molmil
Crystal structure of the Y154F mutant of the light-driven sodium pump KR2 in the monomeric form, pH 8.0
Descriptor: EICOSANE, GLYCEROL, RETINAL, ...
Authors:Kovalev, K, Polovinkin, V, Gushchin, I, Borshchevskiy, V, Gordeliy, V.
Deposit date:2019-04-12
Release date:2019-04-24
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structure and mechanisms of sodium-pumping KR2 rhodopsin.
Sci Adv, 5, 2019
5YCS
DownloadVisualize
BU of 5ycs by Molmil
X-Ray Structure of Enoyl-Acyl Carrier Protein Reductase from Bacillus Anthracis with triclosan
Descriptor: Enoyl-[acyl-carrier-protein] reductase [NADH] FabI, NICOTINAMIDE-ADENINE-DINUCLEOTIDE, SULFATE ION, ...
Authors:Kim, H.T.
Deposit date:2017-09-08
Release date:2018-02-21
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Structural insights into the dimer-tetramer transition of FabI from Bacillus anthracis
Biochem. Biophys. Res. Commun., 493, 2017
8A35
DownloadVisualize
BU of 8a35 by Molmil
NaK C-DI mutant with Rb+ and Na+
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, Potassium channel protein, RUBIDIUM ION, ...
Authors:Minniberger, S, Plested, A.J.R.
Deposit date:2022-06-07
Release date:2023-02-01
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:Asymmetry and Ion Selectivity Properties of Bacterial Channel NaK Mutants Derived from Ionotropic Glutamate Receptors.
J.Mol.Biol., 435, 2023
5YCR
DownloadVisualize
BU of 5ycr by Molmil
X-Ray Structure of Enoyl-Acyl Carrier Protein Reductase from Bacillus Anthracis with NAD+
Descriptor: Enoyl-[acyl-carrier-protein] reductase [NADH] FabI, NICOTINAMIDE-ADENINE-DINUCLEOTIDE, SULFATE ION
Authors:Kim, H.T.
Deposit date:2017-09-08
Release date:2018-02-21
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.96 Å)
Cite:Structural insights into the dimer-tetramer transition of FabI from Bacillus anthracis
Biochem. Biophys. Res. Commun., 493, 2017
6RFC
DownloadVisualize
BU of 6rfc by Molmil
Crystal structure of the potassium-pumping G263F mutant of the light-driven sodium pump KR2 in the monomeric form, pH 4.3
Descriptor: (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate, EICOSANE, GLYCEROL, ...
Authors:Kovalev, K, Polovinkin, V, Gushchin, I, Borshchevskiy, V, Gordeliy, V.
Deposit date:2019-04-12
Release date:2019-04-24
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structure and mechanisms of sodium-pumping KR2 rhodopsin.
Sci Adv, 5, 2019
5GSC
DownloadVisualize
BU of 5gsc by Molmil
Crystal structure of a class C beta lactamase of Apo form
Descriptor: Beta-lactamase, CADMIUM ION
Authors:An, Y.J, Cha, S.S.
Deposit date:2016-08-15
Release date:2017-08-30
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.953 Å)
Cite:Crystal structure of a class C beta lactamase of Apo form
To Be Published

222415

PDB entries from 2024-07-10

PDB statisticsPDBj update infoContact PDBjnumon