Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

4HR0
DownloadVisualize
BU of 4hr0 by Molmil
R2-like ligand-binding oxidase with aerobically reconstituted metal cofactor
Descriptor: FE (III) ION, MANGANESE (II) ION, MANGANESE (III) ION, ...
Authors:Griese, J.J, Hogbom, M.
Deposit date:2012-10-26
Release date:2013-10-16
Last modified:2013-11-06
Method:X-RAY DIFFRACTION (1.896 Å)
Cite:Direct observation of structurally encoded metal discrimination and ether bond formation in a heterodinuclear metalloprotein
Proc.Natl.Acad.Sci.USA, 110, 2013
4HUC
DownloadVisualize
BU of 4huc by Molmil
Crystal structure of LdtMt2, a L,D-transpeptidase from Mycobacterium tuberculosis: domain B and C
Descriptor: ACETATE ION, PROBABLE CONSERVED LIPOPROTEIN LPPS, SODIUM ION
Authors:Both, D, Steiner, E, Lindqvist, Y, Schnell, R, Schneider, G.
Deposit date:2012-11-02
Release date:2012-12-12
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (1.86 Å)
Cite:Structure of LdtMt2, an L,D-transpeptidase from Mycobacterium tuberculosis.
Acta Crystallogr.,Sect.D, 69, 2013
4I12
DownloadVisualize
BU of 4i12 by Molmil
Design and synthesis of thiophene dihydroisoquinolins as novel BACE-1 inhibitors
Descriptor: 2-{(1S)-1-{[(1Z)-6-chloro-3,3-dimethyl-3,4-dihydroisoquinolin-1(2H)-ylidene]amino}-2-[2-propyl-4-(1H-pyrazol-4-yl)thiophen-3-yl]ethyl}pyrimidin-4(5H)-one, Beta-secretase 1, SODIUM ION, ...
Authors:Lougheed, J.C, Brecht, E, Yao, N.H.
Deposit date:2012-11-19
Release date:2013-03-06
Last modified:2018-01-24
Method:X-RAY DIFFRACTION (1.78 Å)
Cite:Design and synthesis of thiophene dihydroisoquinolines as novel BACE1 inhibitors.
Bioorg.Med.Chem.Lett., 23, 2013
3D6A
DownloadVisualize
BU of 3d6a by Molmil
Crystal structure of the 2H-phosphatase domain of Sts-2 in complex with tungstate.
Descriptor: MAGNESIUM ION, SODIUM ION, Sts-2 protein, ...
Authors:Chen, Y, Carpino, N, Nassar, N.
Deposit date:2008-05-19
Release date:2009-03-03
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.25 Å)
Cite:Structural and functional characterization of the 2H-phosphatase domain of Sts-2 reveals an acid-dependent phosphatase activity.
Biochemistry, 48, 2009
4I9Q
DownloadVisualize
BU of 4i9q by Molmil
Crystal structure of the ternary complex of the D714A mutant of RB69 DNA polymerase
Descriptor: 2'-deoxy-5'-O-[(R)-hydroxy{[(R)-hydroxy(phosphonooxy)phosphoryl]amino}phosphoryl]guanosine, CALCIUM ION, DNA (5'-D(*GP*CP*GP*GP*AP*CP*TP*GP*CP*TP*TP*AP*C)-3'), ...
Authors:Guja, K.E, Jacewicz, A, Trzemecka, A, Plochocka, D, Yakubovskaya, E, Bebenek, A, Garcia-Diaz, M.
Deposit date:2012-12-05
Release date:2013-10-09
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:A Remote Palm Domain Residue of RB69 DNA Polymerase Is Critical for Enzyme Activity and Influences the Conformation of the Active Site.
Plos One, 8, 2013
4I32
DownloadVisualize
BU of 4i32 by Molmil
Crystal structure of HCV NS3/4A D168V protease complexed with compound 4
Descriptor: (2R,6S,7E,10E,13aR,14aR,16aS)-2-{[7-methoxy-8-methyl-2-(propan-2-yloxy)quinolin-4-yl]oxy}-N-[(1-methylcyclopropyl)sulfonyl]-6-{[(1-methyl-1H-pyrazol-3-yl)carbonyl]amino}-5,16-dioxo-1,2,3,6,9,12,13,13a,14,15,16,16a-dodecahydrocyclopropa[e]pyrrolo[1,2-a][1,4]diazacyclopentadecine-14a(5H)-carboxamide, Genome polyprotein, HCV non-structural protein 4A, ...
Authors:Lemke, C.T.
Deposit date:2012-11-23
Release date:2013-01-02
Last modified:2013-03-13
Method:X-RAY DIFFRACTION (2.3001 Å)
Cite:Molecular Mechanism by Which a Potent Hepatitis C Virus NS3-NS4A Protease Inhibitor Overcomes Emergence of Resistance.
J.Biol.Chem., 288, 2013
1O05
DownloadVisualize
BU of 1o05 by Molmil
Apo form of human mitochondrial aldehyde dehydrogenase
Descriptor: Aldehyde dehydrogenase, SODIUM ION
Authors:Hurley, T.D, Perez-Miller, S, Breen, H.
Deposit date:2003-02-20
Release date:2003-03-04
Last modified:2023-08-16
Method:X-RAY DIFFRACTION (2.25 Å)
Cite:Order and disorder in mitochondrial aldehyde dehydrogenase
Chem.Biol.Interact., 130-132, 2001
4HSD
DownloadVisualize
BU of 4hsd by Molmil
Crystal structure of a new form of plant lectin from Cicer arietinum at 2.45 Angstrom resolution
Descriptor: Lectin, SODIUM ION
Authors:Kumar, S, Singh, A, Bhushan, A, Dey, S, Sharma, S, Singh, T.P.
Deposit date:2012-10-30
Release date:2012-11-14
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.45 Å)
Cite:Crystal structure of a new form of plant lectin from Cicer arietinum at 2.45 Angstrom resolution
to be published
4I8P
DownloadVisualize
BU of 4i8p by Molmil
Crystal structure of aminoaldehyde dehydrogenase 1a from Zea mays (ZmAMADH1a)
Descriptor: 1,2-ETHANEDIOL, Aminoaldehyde dehydrogenase 1, DI(HYDROXYETHYL)ETHER, ...
Authors:Morera, S, Vigouroux, A, Kopecny, D.
Deposit date:2012-12-04
Release date:2013-02-20
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Plant ALDH10 family: identifying critical residues for substrate specificity and trapping a thiohemiacetal intermediate.
J.Biol.Chem., 288, 2013
4IED
DownloadVisualize
BU of 4ied by Molmil
Crystal Structure of FUS-1 (OXA-85), a Class D beta-lactamase from Fusobacterium nucleatum subsp. polymorphum
Descriptor: 1,2-ETHANEDIOL, CHLORIDE ION, Class D beta-lactamase, ...
Authors:Mangani, S, Benvenuti, M, Docquier, J.D.
Deposit date:2012-12-13
Release date:2014-01-22
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Crystal Structure of FUS-1 (OXA-85), a Class D beta-lactamase from Fusobacterium nucleatum subsp. polymorphum
To be Published
2YGH
DownloadVisualize
BU of 2ygh by Molmil
SAM-I riboswitch with a G2nA mutation in the Kink turn in complex with S-adenosylmethionine
Descriptor: POTASSIUM ION, S-ADENOSYLMETHIONINE, SAM-I RIBOSWITCH, ...
Authors:Schroeder, K, Daldrop, P, Lilley, D.
Deposit date:2011-04-17
Release date:2011-09-07
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:RNA Tertiary Interactions in a Riboswitch Stabilize the Structure of a Kink Turn.
Structure, 19, 2011
2YNQ
DownloadVisualize
BU of 2ynq by Molmil
Crystal Structure of Geobacillus thermodenitrificans EssB extracellular fragment
Descriptor: CHLORIDE ION, ESSB, GLYCEROL, ...
Authors:Zoltner, M, Fyfe, P.K, Hunter, W.N.
Deposit date:2012-10-17
Release date:2012-12-05
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:The Architecture of Essb, an Integral Membrane Component of the Type Vii Secretion System.
Structure, 21, 2013
3CQX
DownloadVisualize
BU of 3cqx by Molmil
Chaperone Complex
Descriptor: BAG family molecular chaperone regulator 2, Heat shock cognate 71 kDa protein, SODIUM ION, ...
Authors:Xu, Z, Nix, J.C, Misra, S.
Deposit date:2008-04-03
Release date:2008-11-25
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structural basis of nucleotide exchange and client binding by the Hsp70 cochaperone Bag2
Nat.Struct.Mol.Biol., 15, 2008
4GLY
DownloadVisualize
BU of 4gly by Molmil
Human urokinase-type plasminogen activator uPA in complex with the two-disulfide bridge peptide UK504
Descriptor: BICYCLIC PEPTIDE INHIBITOR UK504, CHLORIDE ION, GLYCEROL, ...
Authors:Buth, S.A, Leiman, P.G, Chen, S, Heinis, C.
Deposit date:2012-08-15
Release date:2013-05-15
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (1.518 Å)
Cite:Bicyclic Peptide Ligands Pulled out of Cysteine-Rich Peptide Libraries.
J.Am.Chem.Soc., 135, 2013
4FO6
DownloadVisualize
BU of 4fo6 by Molmil
Crystal structure of the pre-catalytic ternary complex of polymerase lambda with a dATP analog opposite a templating T and an rCMP at the primer terminus.
Descriptor: 2'-deoxy-5'-O-[(S)-hydroxy{[(S)-hydroxy(phosphonooxy)phosphoryl]methyl}phosphoryl]adenosine, 5'-D(*CP*AP*GP*TP*AP)-R(P*C)-3', 5'-D(*CP*GP*GP*CP*TP*GP*TP*AP*CP*TP*G)-3', ...
Authors:Gosavi, R.A, Moon, A.F, Kunkel, T.A, Pedersen, L.C, Bebenek, K.
Deposit date:2012-06-20
Release date:2012-07-11
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (2.007 Å)
Cite:The catalytic cycle for ribonucleotide incorporation by human DNA Pol lambda
Nucleic Acids Res., 40, 2012
3DYQ
DownloadVisualize
BU of 3dyq by Molmil
human phosphodiestrase 9 (inhibited by omitting divalent cation) in complex with cGMP
Descriptor: 3-ISOBUTYL-1-METHYLXANTHINE, CYCLIC GUANOSINE MONOPHOSPHATE, High affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A, ...
Authors:Liu, S, Mansour, M.N, Dillman, K, Perez, J, Danley, D, Menniti, F.
Deposit date:2008-07-28
Release date:2008-09-16
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Structural basis for the catalytic mechanism of human phosphodiesterase 9.
Proc.Natl.Acad.Sci.Usa, 105, 2008
4FJ4
DownloadVisualize
BU of 4fj4 by Molmil
Crystal structure of the protein Q9HRE7 complexed with mercury from Halobacterium salinarium at the resolution 2.1A, Northeast Structural Genomics Consortium target HsR50
Descriptor: ETHYL MERCURY ION, SODIUM ION, Uncharacterized protein
Authors:Kuzin, A, Chen, Y, Vorobiev, S.M, Seetharaman, J, Janjua, J, Xiao, R, Cunningham, K, Maglaqui, M, Owens, L.A, Wang, H, Everett, J.K, Acton, T.B, Montelione, G.T, Hunt, J.F, Tong, L, Northeast Structural Genomics Consortium (NESG)
Deposit date:2012-06-11
Release date:2012-08-22
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Northeast Structural Genomics Consortium Target HsR50
To be Published
4GVD
DownloadVisualize
BU of 4gvd by Molmil
Crystal Structure of T-cell Lymphoma Invasion and Metastasis-1 PDZ in complex with Syndecan1 Peptide
Descriptor: 5-(DIMETHYLAMINO)-1-NAPHTHALENESULFONIC ACID(DANSYL ACID), CHLORIDE ION, SODIUM ION, ...
Authors:Liu, X, Shepherd, T.R, Murray, A.M, Xu, Z, Fuentes, E.J.
Deposit date:2012-08-30
Release date:2013-03-13
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:The structure of the Tiam1 PDZ domain/ phospho-syndecan1 complex reveals a ligand conformation that modulates protein dynamics.
Structure, 21, 2013
4GYT
DownloadVisualize
BU of 4gyt by Molmil
Crystal structure of lpg0076 protein from Legionella pneumophila
Descriptor: SODIUM ION, uncharacterized protein
Authors:Michalska, K, Xu, X, Cui, H, Savchenko, A, Joachimiak, A, Midwest Center for Structural Genomics (MCSG)
Deposit date:2012-09-05
Release date:2012-09-26
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.047 Å)
Cite:Crystal structure of lpg0076 protein from Legionella pneumophila
To be Published
4GXJ
DownloadVisualize
BU of 4gxj by Molmil
R283K DNA polymerase beta ternary complex with a templating 8OG and incoming dCTP analog
Descriptor: 2'-deoxy-5'-O-[(S)-{difluoro[(S)-hydroxy(phosphonooxy)phosphoryl]methyl}(hydroxy)phosphoryl]cytidine, DNA (5'-D(*CP*CP*GP*AP*CP*(8OG)P*TP*CP*GP*CP*AP*TP*CP*AP*GP*C)-3'), DNA (5'-D(*GP*CP*TP*GP*AP*TP*GP*CP*GP*A)-3'), ...
Authors:Freudenthal, B.D, Beard, W.A, Wilson, S.H.
Deposit date:2012-09-04
Release date:2013-01-16
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:DNA polymerase minor groove interactions modulate mutagenic bypass of a templating 8-oxoguanine lesion.
Nucleic Acids Res., 41, 2013
4HDP
DownloadVisualize
BU of 4hdp by Molmil
Crystal Structure of HIV-1 protease mutants I50V complexed with inhibitor GRL-0519
Descriptor: (3R,3aS,3bR,6aS,7aS)-octahydrodifuro[2,3-b:3',2'-d]furan-3-yl [(1S,2R)-1-benzyl-2-hydroxy-3-{[(4-methoxyphenyl)sulfonyl](2-methylpropyl)amino}propyl]carbamate, CHLORIDE ION, HIV-1 Protease, ...
Authors:Shen, C.H, Zhang, H, Weber, I.T.
Deposit date:2012-10-02
Release date:2013-08-14
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (1.22 Å)
Cite:Novel P2 tris-tetrahydrofuran group in antiviral compound 1 (GRL-0519) fills the S2 binding pocket of selected mutants of HIV-1 protease.
J.Med.Chem., 56, 2013
3DIQ
DownloadVisualize
BU of 3diq by Molmil
Crystallization of the Thermotoga maritima lysine riboswitch bound to homoarginine
Descriptor: L-HOMOARGININE, PENTAETHYLENE GLYCOL, POTASSIUM ION, ...
Authors:serganov, A.A.
Deposit date:2008-06-20
Release date:2008-09-16
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Structural insights into amino acid binding and gene control by a lysine riboswitch.
Nature, 455, 2008
4H4K
DownloadVisualize
BU of 4h4k by Molmil
Structure of the Cmr2-Cmr3 subcomplex of the Cmr RNA-silencing complex
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, CRISPR system Cmr subunit Cmr2, CRISPR system Cmr subunit Cmr3, ...
Authors:Shao, Y, Cocozaki, A.I, Ramia, N.F, Terns, R.M, Terns, M.P, Li, H.
Deposit date:2012-09-17
Release date:2013-03-06
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.804 Å)
Cite:Structure of the cmr2-cmr3 subcomplex of the cmr RNA silencing complex.
Structure, 21, 2013
2VDX
DownloadVisualize
BU of 2vdx by Molmil
Crystal Structure of the reactive loop Cleaved Corticosteroid Binding Globulin
Descriptor: CORTICOSTEROID-BINDING GLOBULIN, SODIUM ION
Authors:Zhou, A, Wei, Z, Read, R.J.
Deposit date:2007-10-13
Release date:2008-05-06
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (1.84 Å)
Cite:The S-to-R Transition of Corticosteroid-Binding Globulin and the Mechanism of Hormone Release.
J.Mol.Biol., 380, 2008
4HC6
DownloadVisualize
BU of 4hc6 by Molmil
Mycobacterium tuberculosis Rv2523cE77A x-ray structure solved with 1.8 angstrom resolution
Descriptor: BROMIDE ION, CHLORIDE ION, GLYCEROL, ...
Authors:Kim, H.-B, Han, G.-W, Hung, L.-W, Terwilliger, C.T, Kim, C.-Y, Integrated Center for Structure and Function Innovation (ISFI)
Deposit date:2012-09-28
Release date:2012-11-28
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Mycobacterium tuberculosis Rv2523cE77A x-ray structure solved with 1.8 angstrom resolution
To be Published

222415

PDB entries from 2024-07-10

PDB statisticsPDBj update infoContact PDBjnumon