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8YB5
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BU of 8yb5 by Molmil
SARS-CoV-2 DMV nsp3-4 pore complex (consensus-pore, C6 symmetry)
Descriptor: Non-structural protein 4, Papain-like protease nsp3
Authors:Huang, Y.X, Zhong, L.J, Zhang, W.X, Ni, T.
Deposit date:2024-02-11
Release date:2024-06-19
Method:ELECTRON MICROSCOPY (4.2 Å)
Cite:Molecular Architecture of Coronavirus Double Membrane Vesicle Pore Complex
To Be Published
8YRH
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BU of 8yrh by Molmil
Complex of SARS-CoV-2 main protease and Rosmarinic acid
Descriptor: (2R)-3-(3,4-dihydroxyphenyl)-2-{[(2E)-3-(3,4-dihydroxyphenyl)prop-2-enoyl]oxy}propanoic acid, 3C-like proteinase nsp5
Authors:Wang, Q.S, Li, Q.H.
Deposit date:2024-03-21
Release date:2024-07-03
Method:X-RAY DIFFRACTION (1.841 Å)
Cite:Structural basis of rosmarinic acid inhibitory mechanism on SARS-CoV-2 main protease.
Biochem.Biophys.Res.Commun., 724, 2024
9BRQ
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BU of 9brq by Molmil
Intact V-ATPase State 3 and synaptophysin complex in mouse brain isolated synaptic vesicles
Descriptor: Renin receptor cytoplasmic fragment, Ribonuclease kappa, Synaptophysin, ...
Authors:Wang, C, Jiang, W, Yang, K, Wang, X, Guo, Q, Brunger, A.T.
Deposit date:2024-05-11
Release date:2024-06-19
Method:ELECTRON MICROSCOPY (4.3 Å)
Cite:Structure and topography of the synaptic V-ATPase-synaptophysin complex.
Nature, 2024
8YIF
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BU of 8yif by Molmil
Crystal structure of GH13_30 alpha-glucosidase CmmB in complex with acarviosin
Descriptor: Acarviosin, Alpha-glucosidase
Authors:Saburi, W, Tagami, T, Yu, J, Ose, T, Yao, M, Mori, H.
Deposit date:2024-02-29
Release date:2024-07-03
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Molecular mechanism for the substrate specificity of Arthrobacter globiformis M6 alpha-glucosidase CmmB, belonging to glycoside hydrolase family 13 subfamily 30
Food Biosci, 61, 2024
8ZB8
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BU of 8zb8 by Molmil
Crystal structure of T2R-TTL-DPP21 complex
Descriptor: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, CALCIUM ION, Detyrosinated tubulin alpha-1B chain, ...
Authors:Wu, C.Y, Chen, J.J.
Deposit date:2024-04-26
Release date:2024-06-26
Method:X-RAY DIFFRACTION (2.94 Å)
Cite:Crystal structure of T2R-TTL-DPP21 complex
To Be Published
9EX2
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BU of 9ex2 by Molmil
X-ray structure of a polyoxidovanadate/lysozyme adduct obtained when the protein is treated with [VIVO(acac)2] in 1.1 M NaCl, 0.1 M sodium acetate at pH 4.0 (Structure C)
Descriptor: CHLORIDE ION, Lysozyme C, Polyoxidovanadate complex, ...
Authors:Tito, G, Merlino, A, Ferraro, G.
Deposit date:2024-04-05
Release date:2024-06-26
Last modified:2024-07-03
Method:X-RAY DIFFRACTION (1.172 Å)
Cite:Non-Covalent and Covalent Binding of New Mixed-Valence Cage-like Polyoxidovanadate Clusters to Lysozyme.
Angew.Chem.Int.Ed.Engl., 2024
8Z50
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BU of 8z50 by Molmil
Crystal structure of the ASF1-H3T-H4 complex
Descriptor: Histone H3.1t, Histone H4, Histone chaperone ASF1A
Authors:Xu, L.
Deposit date:2024-04-18
Release date:2024-07-03
Last modified:2024-07-10
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Structural insights into instability of the nucleosome driven by histone variant H3T.
Biochem.Biophys.Res.Commun., 727, 2024
7M1X
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BU of 7m1x by Molmil
Cryo-EM Structure of Nucleosome containing mouse histone variant H2A.Z
Descriptor: DNA (136-MER), Histone H2A.Z, Histone H2B 1.1, ...
Authors:Tan, D, Lewis, T.
Deposit date:2021-03-15
Release date:2021-09-29
Last modified:2024-05-29
Method:ELECTRON MICROSCOPY (3.7 Å)
Cite:Structural basis of chromatin regulation by histone variant H2A.Z.
Nucleic Acids Res., 49, 2021
2FS7
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BU of 2fs7 by Molmil
Crystal Structure of Apo-Cellular Retinoic Acid Binding Protein Type II At 1.55 Angstroms Resolution
Descriptor: ACETATE ION, CHLORIDE ION, Cellular retinoic acid-binding protein 2
Authors:Vaezeslami, S, Geiger, J.H.
Deposit date:2006-01-21
Release date:2006-09-19
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (1.55 Å)
Cite:The structure of Apo-wild-type cellular retinoic acid binding protein II at 1.4 A and its relationship to ligand binding and nuclear translocation.
J.Mol.Biol., 363, 2006
9FEB
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BU of 9feb by Molmil
Short-chain dehydrogenase/reductase (SDR) from Thermus caliditerrae in complex with NADP
Descriptor: MAGNESIUM ION, NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE, SDR family oxidoreductase
Authors:Kapur, B, Nar, H.
Deposit date:2024-05-17
Release date:2024-06-26
Method:X-RAY DIFFRACTION (1.698 Å)
Cite:In silico enzyme screening identifies an SDR ketoreductase from Thermus caliditerrae as an attractive biocatalyst and promising candidate for protein engineering
Front Chem Biol, 2024
8ZX6
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BU of 8zx6 by Molmil
Heparin bound Tau fibril PHF
Descriptor: Isoform Tau-F of Microtubule-associated protein tau
Authors:Tao, Y.Q, Liu, C, Li, D.
Deposit date:2024-06-13
Release date:2024-07-03
Method:ELECTRON MICROSCOPY (3.5 Å)
Cite:Heparin bound Tau fibril PHF
To Be Published
9BRC
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BU of 9brc by Molmil
Synaptic Vesicle V-ATPase with synaptophysin and SidK, State 2
Descriptor: ATPase H+-transporting V1 subunit D, ATPase, H+ transporting, ...
Authors:Coupland, C.E, Rubinstein, J.L.
Deposit date:2024-05-11
Release date:2024-06-26
Last modified:2024-07-03
Method:ELECTRON MICROSCOPY (3.9 Å)
Cite:High-resolution electron cryomicroscopy of V-ATPase in native synaptic vesicles.
Science, 2024
8Y83
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BU of 8y83 by Molmil
Crystal structure of a ketoreductase from Sphingobacterium siyangense SY1 with co-enzyme
Descriptor: NAD(P)-dependent dehydrogenase (Short-subunit alcohol dehydrogenase family), NICOTINAMIDE-ADENINE-DINUCLEOTIDE
Authors:Zheng, Z.R, Wei, H.L, Liu, W.D, You, S.
Deposit date:2024-02-05
Release date:2024-06-12
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal structure of a ketoreductase from Sphingobacterium siyangense SY1 with co-enzyme
To Be Published
8ZNG
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BU of 8zng by Molmil
Cryo-EM structure of W89F mutated Glutamate dehydrogenase from Thermococcus profundus in complex with NADPH and AKG in the steady stage of reaction
Descriptor: 2-OXOGLUTARIC ACID, Glutamate dehydrogenase, NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
Authors:Wakabayashi, T, Nakasako, M.
Deposit date:2024-05-26
Release date:2024-06-12
Method:ELECTRON MICROSCOPY (2.5 Å)
Cite:Mechanism for drastic reduction in catalytic activity of Trp89Phe-mutated glutamate dehydrogenase revealed by crystal structure and cryoEM-sampling of metastable conformation in action
To Be Published
9F9L
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BU of 9f9l by Molmil
Crystal structure of MUS81-EME1 bound by compound 16.
Descriptor: 2-[2-[4-(cyanomethyl)phenyl]phenyl]-5-oxidanyl-6-oxidanylidene-1H-pyrimidine-4-carboxylic acid, Crossover junction endonuclease EME1, Crossover junction endonuclease MUS81, ...
Authors:Collie, G.W.
Deposit date:2024-05-07
Release date:2024-07-03
Method:X-RAY DIFFRACTION (2.02 Å)
Cite:Fragment-Based Discovery of Novel MUS81 Inhibitors
Acs Med.Chem.Lett., 2024
8ZOZ
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BU of 8zoz by Molmil
Crystal structure of the complex of glyceraldehyde-3-phosphate dehydrogenase of type B from Acinetobacter baumannii with Adenosine monophosphate at 3.20 A resolution.
Descriptor: ADENOSINE MONOPHOSPHATE, Glyceraldehyde-3-phosphate dehydrogenase, SULFATE ION
Authors:Pahuja, P, Viswanathan, V, Kumari, A, Singh, A, Kumar, A, Sharma, P, Chopra, S, Sharma, S, Raje, C.I, Singh, T.P.
Deposit date:2024-05-29
Release date:2024-06-12
Method:X-RAY DIFFRACTION (3.2 Å)
Cite:Crystal structure of the complex of glyceraldehyde-3-phosphate dehydrogenase of type B from Acinetobacter baumannii with Adenosine monophosphate at 3.20 A resolution.
To Be Published
9FP6
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BU of 9fp6 by Molmil
Structure of the NbNRC2 hexameric resistosome
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, NRC2a
Authors:Webster, M.W, Madhuprakash, J, Kamoun, S.
Deposit date:2024-06-13
Release date:2024-07-03
Method:ELECTRON MICROSCOPY (2.9 Å)
Cite:Cryo-EM structure of the NbNRC2 hexameric resistosome
To Be Published
9BBH
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BU of 9bbh by Molmil
Co-crystal structure of human DDB1 bound to fragment UB028670
Descriptor: 1,2-ETHANEDIOL, 4-methoxy-1H-indole, DNA damage-binding protein 1, ...
Authors:Zeng, H, Dong, A, Frommlet, A, Seitova, A, Loppnau, P, Ackloo, S, Arrowsmith, C.H, Edwards, A.M, Halabelian, L, Structural Genomics Consortium (SGC)
Deposit date:2024-04-05
Release date:2024-06-12
Method:X-RAY DIFFRACTION (2 Å)
Cite:Co-crystal structure of human DDB1 bound to fragment UB028670
To be published
9BZQ
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BU of 9bzq by Molmil
Structure of Class A Beta-lactamase from Bordetella bronchiseptica RB50 in a complex with Avibactam
Descriptor: (2S,5R)-1-formyl-5-[(sulfooxy)amino]piperidine-2-carboxamide, 1,2-ETHANEDIOL, FORMIC ACID, ...
Authors:Maltseva, N, Kim, Y, Endres, M, Joachimiak, A, Center for Structural Biology of Infectious Diseases (CSBID)
Deposit date:2024-05-24
Release date:2024-06-12
Method:X-RAY DIFFRACTION (1.47 Å)
Cite:Structure of Class A Beta-lactamase from Bordetella bronchiseptica RB50 in a complex with Avibactam
To Be Published
9EUA
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BU of 9eua by Molmil
The FK1 domain of FKBP51 in complex with SAFit-analog 23d
Descriptor: (1-propylpyrazol-4-yl)methyl (2S)-1-[(2S)-2-cyclohexyl-2-(3,4,5-trimethoxyphenyl)ethanoyl]piperidine-2-carboxylate, Peptidyl-prolyl cis-trans isomerase FKBP5
Authors:Meyners, C, Buffa, V, Hausch, F.
Deposit date:2024-03-27
Release date:2024-06-12
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:1,4-Pyrazolyl-containing SAFit-analogues are selective FKBP51 inhibitors with improved ligand efficiency and drug-like profile.
Chemmedchem, 2024
2FT1
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BU of 2ft1 by Molmil
Bacteriophage HK97 Head II
Descriptor: major capsid protein
Authors:Gan, L, Speir, J.A, Conway, J.F, Lander, G, Cheng, N, Firek, B.A, Hendrix, R.W, Duda, R.L, Liljas, L, Johnson, J.E.
Deposit date:2006-01-23
Release date:2006-02-07
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (3.9 Å)
Cite:Capsid Conformational Sampling in HK97 Maturation Visualized by X-Ray Crystallography and Cryo-EM.
Structure, 14, 2006
9EU9
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BU of 9eu9 by Molmil
The FK1 domain of FKBP51 in complex with SAFit-analog 15i
Descriptor: (4-chloranyl-1,3-thiazol-5-yl)methyl (2S)-1-[(2S)-2-cyclohexyl-2-(3,4,5-trimethoxyphenyl)ethanoyl]piperidine-2-carboxylate, Peptidyl-prolyl cis-trans isomerase FKBP5
Authors:Meyners, C, Buffa, V, Hausch, F.
Deposit date:2024-03-27
Release date:2024-06-12
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:1,4-Pyrazolyl-containing SAFit-analogues are selective FKBP51 inhibitors with improved ligand efficiency and drug-like profile.
Chemmedchem, 2024
9FGP
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BU of 9fgp by Molmil
cilia and flagella associated protein 299
Descriptor: Cilia- and flagella-associated protein 299, ZINC ION
Authors:Wright, N.D, Koekemoer, L, Structural Genomics Consortium (SGC)
Deposit date:2024-05-24
Release date:2024-06-12
Method:X-RAY DIFFRACTION (1.49 Å)
Cite:cilia and flagella associated protein 299
To Be Published
9BG1
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BU of 9bg1 by Molmil
Tri-complex of Compound-3, KRAS G12V, and CypA
Descriptor: (2R)-N-[(1P,7S,9S,13R,20M)-21-ethyl-20-{2-[(1S)-1-methoxyethyl]pyridin-3-yl}-17,17-dimethyl-8,14-dioxo-15-oxa-4-thia-9,21,27,28-tetraazapentacyclo[17.5.2.1~2,5~.1~9,13~.0~22,26~]octacosa-1(24),2,5(28),19,22,25-hexaen-7-yl]-3-methyl-2-(N-methylacetamido)butanamide (non-preferred name), GTPase KRas, MAGNESIUM ION, ...
Authors:Tomlinson, A.C.A, Saldajeno-Concar, M, Knox, J.E, Yano, J.K.
Deposit date:2024-04-18
Release date:2024-06-12
Last modified:2024-06-26
Method:X-RAY DIFFRACTION (1.51 Å)
Cite:Tri-complex of Compound-3, KRAS G12V, and CypA
To be published
9EUE
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BU of 9eue by Molmil
The FK1 domain of FKBP51 in complex with SAFit-analog 23a
Descriptor: (1-methylpyrazol-4-yl)methyl (2S)-1-[(2S)-2-cyclohexyl-2-(3,4,5-trimethoxyphenyl)ethanoyl]piperidine-2-carboxylate, Peptidyl-prolyl cis-trans isomerase FKBP5
Authors:Meyners, C, Buffa, V, Hausch, F.
Deposit date:2024-03-27
Release date:2024-06-12
Method:X-RAY DIFFRACTION (2 Å)
Cite:1,4-Pyrazolyl-containing SAFit-analogues are selective FKBP51 inhibitors with improved ligand efficiency and drug-like profile.
Chemmedchem, 2024

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PDB entries from 2024-07-10

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