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5D7R
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BU of 5d7r by Molmil
Crystal structure of the ATP binding domain of S. aureus GyrB complexed with a ligand
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, 3-hydroxy-5-[5-(6-hydroxy-7-propyl-2H-indazol-3-yl)-1,3-thiazol-2-yl]pyridine-2-carboxylic acid, CHLORIDE ION, ...
Authors:Zhang, J, Yang, Q, Cross, J.B, Romero, J.A.C, Ryan, M.D, Lippa, B, Dolle, R.E, Andersen, O.A, Barker, J, Cheng, R.K, Kahmann, J, Felicetti, B, Wood, M, Scheich, C.
Deposit date:2015-08-14
Release date:2015-11-18
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (1.55 Å)
Cite:Discovery of Indazole Derivatives as a Novel Class of Bacterial Gyrase B Inhibitors.
Acs Med.Chem.Lett., 6, 2015
5CWD
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BU of 5cwd by Molmil
Crystal structure of de novo designed helical repeat protein DHR7
Descriptor: Designed helical repeat protein
Authors:Bhabha, G, Ekiert, D.C.
Deposit date:2015-07-28
Release date:2015-12-16
Last modified:2024-10-09
Method:X-RAY DIFFRACTION (2.61 Å)
Cite:Exploring the repeat protein universe through computational protein design.
Nature, 528, 2015
5D83
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BU of 5d83 by Molmil
Crystal Structure of Ketosteroid Isomerase from Pseudomonas putida (pKSI); D40N, Y32(Cl-Y)
Descriptor: Delta(5)-3-ketosteroid isomerase
Authors:Wu, Y, Fried, S.D, Boxer, S.G.
Deposit date:2015-08-15
Release date:2015-12-02
Last modified:2025-04-02
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Dissecting Proton Delocalization in an Enzyme's Hydrogen Bond Network with Unnatural Amino Acids.
Biochemistry, 54, 2015
5D8D
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BU of 5d8d by Molmil
Crystal structure of D-alanine-D-alanine ligase from Acinetobacter baumannii
Descriptor: D-alanine--D-alanine ligase
Authors:Huynh, K.H, Hong, M.K, Kang, L.W.
Deposit date:2015-08-17
Release date:2016-08-17
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.19 Å)
Cite:The crystal structure of the D-alanine-D-alanine ligase from Acinetobacter baumannii suggests a flexible conformational change in the central domain before nucleotide binding
J. Microbiol., 53, 2015
5CWI
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BU of 5cwi by Molmil
Crystal structure of de novo designed helical repeat protein DHR18
Descriptor: Designed helical repeat protein, PHOSPHATE ION
Authors:Bhabha, G, Ekiert, D.C.
Deposit date:2015-07-28
Release date:2015-12-16
Last modified:2024-10-23
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Exploring the repeat protein universe through computational protein design.
Nature, 528, 2015
5CWR
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BU of 5cwr by Molmil
Crystal Structure of human DNA polymerase lambda L431A mutant in complex with a one nucleotide DNA gap and dCTP
Descriptor: 2'-DEOXYCYTIDINE-5'-TRIPHOSPHATE, CALCIUM ION, DNA (5'-D(*CP*AP*GP*TP*AP*C)-3'), ...
Authors:Liu, M.S, Tsai, M.D.
Deposit date:2015-07-28
Release date:2016-02-24
Last modified:2024-10-23
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Structural Mechanism for the Fidelity Modulation of DNA Polymerase lambda
J.Am.Chem.Soc., 138, 2016
5DAD
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BU of 5dad by Molmil
Crystal Structure of Human KEAP1 BTB Domain in Complex with Small Molecule TX64014
Descriptor: (6aS,7S,10aS)-8-hydroxy-4-methoxy-2,7,10a-trimethyl-5,6,6a,7,10,10a-hexahydrobenzo[h]quinazoline-9-carbonitrile, Kelch-like ECH-associated protein 1
Authors:Huerta, C, Jiang, X, Trevino, I, Bender, C.F, Swinger, K.K, Stoll, V.S, Ferguson, D.A, Thomas, P.J, Probst, B, Dulubova, I, Visnick, M, Wigley, W.C.
Deposit date:2015-08-19
Release date:2016-08-10
Last modified:2024-11-13
Method:X-RAY DIFFRACTION (2.61 Å)
Cite:Characterization of novel small-molecule NRF2 activators: Structural and biochemical validation of stereospecific KEAP1 binding.
Biochim.Biophys.Acta, 1860, 2016
5DAS
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BU of 5das by Molmil
Structure of Mycobacterium tuberculosis NadD in complex with NADP, P21212, form 2
Descriptor: NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE, Nicotinate-nucleotide adenylyltransferase
Authors:Korotkov, K.V.
Deposit date:2015-08-20
Release date:2016-08-24
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Structure of Mycobacterium tuberculosis NadD in complex with NADP, P21212
to be published
5DB2
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BU of 5db2 by Molmil
Menin in complex with MI-389
Descriptor: 2-{2-cyano-5-[(4-{[6-(2,2,2-trifluoroethyl)thieno[2,3-d]pyrimidin-4-yl]amino}piperidin-1-yl)methyl]-1H-indol-1-yl}aceta mide, DI(HYDROXYETHYL)ETHER, DIMETHYL SULFOXIDE, ...
Authors:Pollock, J, Dmitry, B, Cierpicki, T, Grembecka, J.
Deposit date:2015-08-20
Release date:2016-03-30
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (1.54 Å)
Cite:Property Focused Structure-Based Optimization of Small Molecule Inhibitors of the Protein-Protein Interaction between Menin and Mixed Lineage Leukemia (MLL).
J.Med.Chem., 59, 2016
5CZN
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BU of 5czn by Molmil
2009 H1N1 PA endonuclease mutant E119D
Descriptor: MANGANESE (II) ION, Polymerase acidic protein, SULFATE ION
Authors:Kumar, G, White, S.W.
Deposit date:2015-07-31
Release date:2016-03-16
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (1.98 Å)
Cite:Identification and characterization of influenza variants resistant to a viral endonuclease inhibitor.
Proc.Natl.Acad.Sci.USA, 113, 2016
7Y0J
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BU of 7y0j by Molmil
Cryo-EM structure of human IgM-Fc in complex with the J chain and the P. falciparum TM284VAR1
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Erythrocyte membrane protein 2 variant TM284var1, ...
Authors:Ji, C, Xiao, J.
Deposit date:2022-06-05
Release date:2023-04-05
Last modified:2025-07-02
Method:ELECTRON MICROSCOPY (3.62 Å)
Cite:Plasmodium falciparum has evolved multiple mechanisms to hijack human immunoglobulin M.
Nat Commun, 14, 2023
5DBS
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BU of 5dbs by Molmil
2009 H1N1 PA endonuclease mutant E119D in complex with dTMP
Descriptor: MANGANESE (II) ION, Polymerase acidic protein, SULFATE ION, ...
Authors:Kumar, G, White, S.W.
Deposit date:2015-08-21
Release date:2016-03-23
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (2.11 Å)
Cite:Identification and characterization of influenza variants resistant to a viral endonuclease inhibitor.
Proc. Natl. Acad. Sci. U.S.A., 113, 2016
5D0A
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BU of 5d0a by Molmil
Crystal structure of epoxyqueuosine reductase with cleaved RNA stem loop
Descriptor: COBALAMIN, Epoxyqueuosine reductase, GLYCEROL, ...
Authors:Dowling, D.P, Miles, Z.D, Kohrer, C, Bandarian, V, Drennan, C.L.
Deposit date:2015-08-03
Release date:2016-09-28
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Molecular basis of cobalamin-dependent RNA modification.
Nucleic Acids Res., 44, 2016
3BL8
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BU of 3bl8 by Molmil
Crystal structure of the extracellular domain of neuroligin 2A from mouse
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Neuroligin-2, alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ...
Authors:Jin, X, Koehnke, J, Shapiro, L.
Deposit date:2007-12-10
Release date:2008-02-19
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (3.3 Å)
Cite:Crystal structure of the extracellular cholinesterase-like domain from neuroligin-2.
Proc.Natl.Acad.Sci.Usa, 105, 2008
5DCH
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BU of 5dch by Molmil
Crystal structure of Pseudomonas aeruginosa DsbA E82I in complex with MIPS-0000851 (3-[(2-METHYLBENZYL)SULFANYL]-4H-1,2,4-TRIAZOL-4-AMINE)
Descriptor: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, 3-[(2-methylbenzyl)sulfanyl]-4H-1,2,4-triazol-4-amine, GLYCEROL, ...
Authors:McMahon, R.M, Martin, J.L.
Deposit date:2015-08-24
Release date:2016-10-05
Last modified:2024-11-06
Method:X-RAY DIFFRACTION (1.447 Å)
Cite:Fragment library screening identifies hits that bind to the non-catalytic surface of Pseudomonas aeruginosa DsbA1.
PLoS ONE, 12, 2017
5DCQ
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BU of 5dcq by Molmil
Crystal structure of bacterial adhesin, FNE from Streptococcus equi spp. equi.
Descriptor: FORMIC ACID, Fibronectin-binding protein, artificial repeat proteins (alphaREP3)
Authors:Tiouajni, M, Graille, M, van Tilbeurgh, H.
Deposit date:2015-08-24
Release date:2016-06-29
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.83 Å)
Cite:Structural and functional analysis of the fibronectin-binding protein FNE from Streptococcus equi spp. equi.
FEBS J., 281, 2014
5DDE
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BU of 5dde by Molmil
Menin in complex with MI-859
Descriptor: 1,2-ETHANEDIOL, 6-(2,2-difluoroethyl)-4-[4-(5,5-dimethyl-4,5-dihydro-1,3-thiazol-2-yl)piperazin-1-yl]thieno[2,3-d]pyrimidine, DIMETHYL SULFOXIDE, ...
Authors:Pollock, J, Dmitry, B, Cierpicki, T, Grembecka, J.
Deposit date:2015-08-24
Release date:2015-09-09
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (1.78 Å)
Cite:Rational Design of Orthogonal Multipolar Interactions with Fluorine in Protein-Ligand Complexes.
J.Med.Chem., 58, 2015
5DDY
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BU of 5ddy by Molmil
Binary complex of human Polymerase lambda with dCTP
Descriptor: 2'-DEOXYCYTIDINE-5'-TRIPHOSPHATE, DNA polymerase lambda, MAGNESIUM ION, ...
Authors:Liu, M.S, Tsai, M.D.
Deposit date:2015-08-25
Release date:2016-02-24
Last modified:2024-11-20
Method:X-RAY DIFFRACTION (3.36 Å)
Cite:Structural Mechanism for the Fidelity Modulation of DNA Polymerase lambda
J.Am.Chem.Soc., 138, 2016
5D1M
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BU of 5d1m by Molmil
Crystal Structure of UbcH5B in Complex with the RING-U5BR Fragment of AO7 (P199A)
Descriptor: 1,2-ETHANEDIOL, DI(HYDROXYETHYL)ETHER, E3 ubiquitin-protein ligase RNF25, ...
Authors:Liang, Y.-H, Li, S, Weissman, A.M, Ji, X.
Deposit date:2015-08-04
Release date:2015-10-28
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (1.581 Å)
Cite:Insights into Ubiquitination from the Unique Clamp-like Binding of the RING E3 AO7 to the E2 UbcH5B.
J.Biol.Chem., 290, 2015
7Y0H
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BU of 7y0h by Molmil
Cryo-EM structure of human IgM-Fc in complex with the J chain and the P. falciparum VAR2CSA FCR3
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Erythrocyte membrane protein 1, ...
Authors:Ji, C, Xiao, J.
Deposit date:2022-06-05
Release date:2023-04-12
Last modified:2025-07-02
Method:ELECTRON MICROSCOPY (3.56 Å)
Cite:Plasmodium falciparum has evolved multiple mechanisms to hijack human immunoglobulin M.
Nat Commun, 14, 2023
5D84
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BU of 5d84 by Molmil
Staphyloferrin B precursor biosynthetic enzyme SbnA bound to PLP
Descriptor: MAGNESIUM ION, PYRIDOXAL-5'-PHOSPHATE, Probable siderophore biosynthesis protein SbnA
Authors:Grigg, J.C, Kobylarz, M.J, Liu, Y, Lee, M.S.F, Heinrichs, D.E, Murphy, M.E.P.
Deposit date:2015-08-15
Release date:2016-02-03
Last modified:2025-04-02
Method:X-RAY DIFFRACTION (1.45 Å)
Cite:Deciphering the Substrate Specificity of SbnA, the Enzyme Catalyzing the First Step in Staphyloferrin B Biosynthesis.
Biochemistry, 55, 2016
5D8N
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BU of 5d8n by Molmil
Tomato leucine aminopeptidase mutant - K354E
Descriptor: 1,2-ETHANEDIOL, ACETATE ION, CHLORIDE ION, ...
Authors:DuPrez, K.T, Scranton, M.A, Walling, L.L, Fan, L.
Deposit date:2015-08-17
Release date:2016-05-11
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:Structural insights into chaperone-activity enhancement by a K354E mutation in tomato acidic leucine aminopeptidase.
Acta Crystallogr D Struct Biol, 72, 2016
5D9G
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BU of 5d9g by Molmil
Crystal structure of TIPRL, TOR signaling pathway regulator-like, in complex with peptide
Descriptor: CHLORIDE ION, NICKEL (II) ION, PHOSPHATE ION, ...
Authors:Scorsato, V, Sandy, J, Brandao-Neto, J, Pereira, H.M, Smetana, J.H.C, Aparicio, R.
Deposit date:2015-08-18
Release date:2016-08-10
Last modified:2024-11-06
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:Crystal structure of the human Tip41 orthologue, TIPRL, reveals a novel fold and a binding site for the PP2Ac C-terminus.
Sci Rep, 6, 2016
5D1Y
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BU of 5d1y by Molmil
Low resolution crystal structure of human ribonucleotide reductase alpha6 hexamer in complex with dATP
Descriptor: Ribonucleoside-diphosphate reductase large subunit
Authors:Ando, N, Li, H, Brignole, E.J, Thompson, S, McLaughlin, M.I, Page, J, Asturias, F, Stubbe, J, Drennan, C.L.
Deposit date:2015-08-04
Release date:2016-01-20
Last modified:2024-10-09
Method:X-RAY DIFFRACTION (9.005 Å)
Cite:Allosteric Inhibition of Human Ribonucleotide Reductase by dATP Entails the Stabilization of a Hexamer.
Biochemistry, 55, 2016
7XJ8
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BU of 7xj8 by Molmil
SARS-CoV-2 BA.1 Spike trimer in complex with 55A8 Fab and 58G6 Fab in the class 2 conformation
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, 55A8 heavy chain, ...
Authors:Guo, H, Gao, Y, Lu, Y, Yang, H, Ji, X.
Deposit date:2022-04-15
Release date:2023-04-19
Last modified:2025-07-02
Method:ELECTRON MICROSCOPY (3.3 Å)
Cite:SARS-CoV-2 BA.1 Spike trimer in complex with 55A8 Fab and 58G6 Fab in the class 2 conformation
To Be Published

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