Loading
PDBj
MenuPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDBDonate
RCSB PDBPDBeBMRBAdv. SearchSearch help

6UZY
DownloadVisualize
BU of 6uzy by Molmil
Cryo-EM structure of Xenopus tropicalis pannexin 1
Descriptor: HEXADECANE, Pannexin, [(2~{R})-1-[2-azanylethoxy(oxidanyl)phosphoryl]oxy-3-hexadecanoyloxy-propan-2-yl] (~{Z})-octadec-9-enoate
Authors:Deng, Z, He, Z, Yuan, P.
Deposit date:2019-11-15
Release date:2020-04-01
Last modified:2024-10-23
Method:ELECTRON MICROSCOPY (3.38 Å)
Cite:Cryo-EM structures of the ATP release channel pannexin 1.
Nat.Struct.Mol.Biol., 27, 2020
8GPG
DownloadVisualize
BU of 8gpg by Molmil
HIV-1 Env X18 UFO in complex with F6 Fab
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, F6 Fab heavy chain, ...
Authors:Niu, J, Xu, Y.W, Yang, B.
Deposit date:2022-08-26
Release date:2023-08-09
Last modified:2024-11-20
Method:ELECTRON MICROSCOPY (4.1 Å)
Cite:Structures and immune recognition of Env trimers from two Asia prevalent HIV-1 CRFs.
Nat Commun, 14, 2023
7SR6
DownloadVisualize
BU of 7sr6 by Molmil
Human Endogenous Retrovirus (HERV-K) reverse transcriptase ternary complex with dsDNA template Primer and dNTP
Descriptor: 1,2-ETHANEDIOL, 1,4-DIETHYLENE DIOXIDE, 1-(2-METHOXY-ETHOXY)-2-{2-[2-(2-METHOXY-ETHOXY]-ETHOXY}-ETHANE, ...
Authors:Baldwin, E.T, Nichols, C.
Deposit date:2021-11-08
Release date:2022-07-20
Last modified:2024-11-20
Method:X-RAY DIFFRACTION (2.62 Å)
Cite:Human endogenous retrovirus-K (HERV-K) reverse transcriptase (RT) structure and biochemistry reveals remarkable similarities to HIV-1 RT and opportunities for HERV-K-specific inhibition.
Proc.Natl.Acad.Sci.USA, 119, 2022
8VJP
DownloadVisualize
BU of 8vjp by Molmil
Histidine-covalent stapled alpha-helical peptide (155H1) targeting hMcl-1
Descriptor: (4Z)-oct-4-en-1-ol, (S~1~R)-3-carbamoyl-4-methoxybenzene-1-sulfinic acid, Histidine-covalent stapled alpha-helical peptide, ...
Authors:Muzzarelli, K.M, Assar, Z, Alboreggia, G, Pellecchia, M.
Deposit date:2024-01-07
Release date:2024-05-15
Last modified:2024-06-05
Method:X-RAY DIFFRACTION (1.13 Å)
Cite:Histidine-Covalent Stapled Alpha-Helical Peptides Targeting hMcl-1.
J.Med.Chem., 67, 2024
9FZA
DownloadVisualize
BU of 9fza by Molmil
TEAD1/YAP in complex with a reversible inhibitor N-[(4-phenoxyphenyl)methyl]imidazo[1,2-a]pyridine-3-carboxamide
Descriptor: CHLORIDE ION, Transcriptional coactivator YAP1, Transcriptional enhancer factor TEF-1, ...
Authors:Musil, D, Freire, F.
Deposit date:2024-07-04
Release date:2024-10-16
Last modified:2024-11-06
Method:X-RAY DIFFRACTION (2.214 Å)
Cite:Discovery of reversible and covalent TEAD 1 selective inhibitors MSC-1254 and MSC-5046 based on one scaffold.
Bioorg.Med.Chem.Lett., 114, 2024
8JM6
DownloadVisualize
BU of 8jm6 by Molmil
Endo-deglycosylated hydroxynitrile lyase isozyme 5 mutant L331A/S333V/P340L from Prunus communis complexed with 2,2-dimethyl-4H-benzo[d][1,3]dioxine-6-carbaldehyde (catalytic conformation)
Descriptor: (R)-mandelonitrile lyase, 2,2-dimethyl-4H-1,3-benzodioxine-6-carbaldehyde, 2-acetamido-2-deoxy-beta-D-glucopyranose, ...
Authors:Zheng, Y.-C, Li, F.-L, Yu, H.-L, Xu, J.-H.
Deposit date:2023-06-04
Release date:2024-06-05
Last modified:2024-10-09
Method:X-RAY DIFFRACTION (1.91 Å)
Cite:Endo-deglycosylated hydroxynitrile lyase isozyme 5 mutant L331A/S333V/P340L from Prunus communis complexed with 2,2-dimethyl-4H-benzo[d][1,3]dioxine-6-carbaldehyde (catalytic conformation)
To Be Published
8BDB
DownloadVisualize
BU of 8bdb by Molmil
Ribulose-1,5-bisphosphate carboxylase/oxygenase from Griffithsia monilis
Descriptor: 1,2-ETHANEDIOL, 2-CARBOXYARABINITOL-1,5-DIPHOSPHATE, BICARBONATE ION, ...
Authors:Andersson, I, Gunn, L.H.
Deposit date:2022-10-19
Release date:2023-06-14
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Grafting Rhodobacter sphaeroides with red algae Rubisco to accelerate catalysis and plant growth.
Nat.Plants, 9, 2023
8JM4
DownloadVisualize
BU of 8jm4 by Molmil
Endo-deglycosylated hydroxynitrile lyase isozyme 5 mutant L331A from Prunus communis complexed with 2-methyl-4H-benzo[d][1,3]dioxine-6-carbaldehyde
Descriptor: (2S)-2-methyl-4H-1,3-benzodioxine-6-carbaldehyde, (R)-mandelonitrile lyase, 2-acetamido-2-deoxy-beta-D-glucopyranose, ...
Authors:Zheng, Y.-C, Li, F.-L, Yu, H.-L, Xu, J.-H.
Deposit date:2023-06-04
Release date:2024-06-05
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Endo-deglycosylated hydroxynitrile lyase isozyme 5 mutant L331A from Prunus communis complexed with 2-methyl-4H-benzo[d][1,3]dioxine-6-carbaldehyde
To Be Published
8JM7
DownloadVisualize
BU of 8jm7 by Molmil
Endo-deglycosylated hydroxynitrile lyase isozyme 5 mutant L331A/S333V/P340L from Prunus communis complexed with 2,2-dimethyl-4H-benzo[d][1,3]dioxine-6-carbaldehyde (noncatalytic conformation)
Descriptor: (R)-mandelonitrile lyase, 2,2-dimethyl-4H-1,3-benzodioxine-6-carbaldehyde, 2-acetamido-2-deoxy-beta-D-glucopyranose, ...
Authors:Zheng, Y.-C, Li, F.-L, Yu, H.-L, Xu, J.-H.
Deposit date:2023-06-04
Release date:2024-06-05
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Endo-deglycosylated hydroxynitrile lyase isozyme 5 mutant from Prunus communis mutant L331A complexed with 2,2-dimethyl-4H-benzo[d][1,3]dioxine-6-carbaldehyde (Form A)
To Be Published
8TCU
DownloadVisualize
BU of 8tcu by Molmil
Structure of PYCR1 complexed with 2-chloro-5-(2-oxoimidazolidin-1-yl)benzoic acid
Descriptor: 2-chloro-5-(2-oxoimidazolidin-1-yl)benzoic acid, Pyrroline-5-carboxylate reductase 1, mitochondrial, ...
Authors:Tanner, J.J, Meeks, K.R.
Deposit date:2023-07-02
Release date:2024-03-06
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2 Å)
Cite:Novel Fragment Inhibitors of PYCR1 from Docking-Guided X-ray Crystallography.
J.Chem.Inf.Model., 64, 2024
6ZQ1
DownloadVisualize
BU of 6zq1 by Molmil
Structure of AraDNJ-Bound MgGH51 a-L-Arabinofuranosidase Crystal Type 1
Descriptor: 1,4-DIDEOXY-1,4-IMINO-L-ARABINITOL, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, CHLORIDE ION, ...
Authors:McGregor, N.G.S, Davies, G.J.
Deposit date:2020-07-09
Release date:2020-11-11
Last modified:2024-10-23
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Structure of a GH51 alpha-L-arabinofuranosidase from Meripilus giganteus: conserved substrate recognition from bacteria to fungi.
Acta Crystallogr D Struct Biol, 76, 2020
8TCY
DownloadVisualize
BU of 8tcy by Molmil
Structure of PYCR1 complexed with 7-fluoro-2-oxo-1,2,3,4-tetrahydroquinoline-6-carboxylic acid
Descriptor: 7-fluoro-2-oxo-1,2,3,4-tetrahydroquinoline-6-carboxylic acid, DI(HYDROXYETHYL)ETHER, Pyrroline-5-carboxylate reductase 1, ...
Authors:Tanner, J.J, Meeks, K.R.
Deposit date:2023-07-02
Release date:2024-03-06
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Novel Fragment Inhibitors of PYCR1 from Docking-Guided X-ray Crystallography.
J.Chem.Inf.Model., 64, 2024
8JM3
DownloadVisualize
BU of 8jm3 by Molmil
Endo-deglycosylated hydroxynitrile lyase isozyme 5 mutant L331A from Prunus communis complexed with 4H-benzo[d][1,3]dioxine-6-carbaldehyde
Descriptor: (R)-mandelonitrile lyase, 2-acetamido-2-deoxy-beta-D-glucopyranose, 4H-1,3-benzodioxine-6-carbaldehyde, ...
Authors:Zheng, Y.-C, Li, F.-L, Yu, H.-L, Xu, J.-H.
Deposit date:2023-06-04
Release date:2024-06-12
Last modified:2024-11-06
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Endo-deglycosylated hydroxynitrile lyase isozyme 5 mutant L331A from Prunus communis complexed with 4H-benzo[d][1,3]dioxine-6-carbaldehyde
To Be Published
6J4K
DownloadVisualize
BU of 6j4k by Molmil
Structural basis for the target DNA recognition and binding by the MYB domain of phosphate starvation response 1
Descriptor: GLYCEROL, MALONIC ACID, Protein PHOSPHATE STARVATION RESPONSE 1
Authors:Jiang, M.Q, Sun, L.F.
Deposit date:2019-01-09
Release date:2019-04-24
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (1.58 Å)
Cite:Structural basis for the Target DNA recognition and binding by the MYB domain of phosphate starvation response 1.
Febs J., 286, 2019
6ZBA
DownloadVisualize
BU of 6zba by Molmil
Crystal structure of PDE4D2 in complex with inhibitor LEO39652
Descriptor: 1,2-ETHANEDIOL, 2-methylpropyl 1-[8-methoxy-5-(1-oxidanylidene-3~{H}-2-benzofuran-5-yl)-[1,2,4]triazolo[1,5-a]pyridin-2-yl]cyclopropane-1-carboxylate, DIMETHYL SULFOXIDE, ...
Authors:Akutsu, M, Hakansson, M, Welin, M, Svensson, A, Logan, D.T, Sorensen, M.D.
Deposit date:2020-06-08
Release date:2020-09-23
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Discovery and Early Clinical Development of Isobutyl 1-[8-Methoxy-5-(1-oxo-3 H -isobenzofuran-5-yl)-[1,2,4]triazolo[1,5- a ]pyridin-2-yl]cyclopropanecarboxylate (LEO 39652), a Novel "Dual-Soft" PDE4 Inhibitor for Topical Treatment of Atopic Dermatitis.
J.Med.Chem., 63, 2020
1FJ9
DownloadVisualize
BU of 1fj9 by Molmil
FRUCTOSE-1,6-BISPHOSPHATASE (MUTANT Y57W) PRODUCTS/ZN/AMP COMPLEX (T-STATE)
Descriptor: 6-O-phosphono-beta-D-fructofuranose, ADENOSINE MONOPHOSPHATE, FRUCTOSE-1,6-BISPHOSPHATASE, ...
Authors:Iancu, C.V, Choe, J.Y, Honzatko, R.B.
Deposit date:2000-08-07
Release date:2000-10-18
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Tryptophan fluorescence reveals the conformational state of a dynamic loop in recombinant porcine fructose-1,6-bisphosphatase.
Biochemistry, 39, 2000
8ZUL
DownloadVisualize
BU of 8zul by Molmil
Crystal Structure of Human Myt1 Kinase domain Bounded with compound 8m
Descriptor: 2-azanyl-5-[2-[(3~{R})-3-azanylpyrrolidin-1-yl]pyridin-4-yl]-3-(2,6-dimethyl-3-oxidanyl-phenyl)benzamide, Membrane-associated tyrosine- and threonine-specific cdc2-inhibitory kinase
Authors:Zhang, Z.M, Zhou, Z.Q.
Deposit date:2024-06-09
Release date:2024-09-11
Last modified:2024-09-25
Method:X-RAY DIFFRACTION (1.80026162 Å)
Cite:Structure-Based Drug Design of 2-Amino-[1,1'-biphenyl]-3-carboxamide Derivatives as Selective PKMYT1 Inhibitors for the Treatment of CCNE1 -Amplified Breast Cancer.
J.Med.Chem., 67, 2024
6ZYM
DownloadVisualize
BU of 6zym by Molmil
Human C Complex Spliceosome - High-resolution CORE
Descriptor: 116 kDa U5 small nuclear ribonucleoprotein component, Cell division cycle 5-like protein, Corepressor interacting with RBPJ 1, ...
Authors:Bertram, K, Kastner, B.
Deposit date:2020-08-02
Release date:2020-10-14
Last modified:2025-10-01
Method:ELECTRON MICROSCOPY (3.4 Å)
Cite:Structural Insights into the Roles of Metazoan-Specific Splicing Factors in the Human Step 1 Spliceosome.
Mol.Cell, 80, 2020
6ZPT
DownloadVisualize
BU of 6zpt by Molmil
Crystal structure of the open conformation of S2_S'-mutant human Angiotensin-1 converting enzyme N-domain.
Descriptor: 1,2-ETHANEDIOL, 2-(2-METHOXYETHOXY)ETHANOL, 2-acetamido-2-deoxy-beta-D-glucopyranose, ...
Authors:Cozier, G.E, Acharya, K.R.
Deposit date:2020-07-09
Release date:2020-10-28
Last modified:2024-11-13
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Angiotensin-converting enzyme open for business: structural insights into the subdomain dynamics.
Febs J., 288, 2021
1FAQ
DownloadVisualize
BU of 1faq by Molmil
RAF-1 CYSTEINE RICH DOMAIN, NMR, 27 STRUCTURES
Descriptor: RAF-1, ZINC ION
Authors:Mott, H.R, Campbell, S.L.
Deposit date:1996-09-05
Release date:1997-01-27
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:The solution structure of the Raf-1 cysteine-rich domain: a novel ras and phospholipid binding site.
Proc.Natl.Acad.Sci.USA, 93, 1996
8CJ7
DownloadVisualize
BU of 8cj7 by Molmil
HDAC6 selective degraded (difluoromethyl)-1,3,4-oxadiazole substrate inhibitor
Descriptor: 6-[(5-pyridin-2-yl-1,2$l^{4},3,4-tetrazacyclopenta-1,3-dien-2-yl)methyl]pyridine-3-carbohydrazide, Histone deacetylase 6, IODIDE ION, ...
Authors:Sandmark, J, Ek, M, Ripa, L.
Deposit date:2023-02-12
Release date:2023-10-18
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.51 Å)
Cite:Selective and Bioavailable HDAC6 2-(Difluoromethyl)-1,3,4-oxadiazole Substrate Inhibitors and Modeling of Their Bioactivation Mechanism.
J.Med.Chem., 66, 2023
6XQG
DownloadVisualize
BU of 6xqg by Molmil
Crystal structure of SCLam E144S mutant, a non-specific endo-beta-1,3(4)-glucanase from family GH16, co-crystallized with 1,3-beta-D-cellobiosyl-cellobiose, presenting a 1,3-beta-D-cellobiosyl-glucose at active site
Descriptor: CALCIUM ION, GH16 family protein, beta-D-glucopyranose-(1-4)-beta-D-glucopyranose-(1-3)-alpha-D-glucopyranose
Authors:Liberato, M.V, Squina, F.
Deposit date:2020-07-09
Release date:2021-02-10
Last modified:2024-10-23
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:Insights into the dual cleavage activity of the GH16 laminarinase enzyme class on beta-1,3 and beta-1,4 glycosidic bonds.
J.Biol.Chem., 296, 2021
6XQL
DownloadVisualize
BU of 6xql by Molmil
Crystal structure of SCLam E144S mutant, a non-specific endo-beta-1,3(4)-glucanase from family GH16, co-crystallized with cellohexaose, presenting a 1,3-beta-D-cellobiosyl-glucose at active site
Descriptor: CALCIUM ION, GH16 family protein, beta-D-glucopyranose-(1-4)-beta-D-glucopyranose-(1-3)-alpha-D-glucopyranose
Authors:Liberato, M.V, Squina, F.
Deposit date:2020-07-09
Release date:2021-02-10
Last modified:2024-10-23
Method:X-RAY DIFFRACTION (1.97 Å)
Cite:Insights into the dual cleavage activity of the GH16 laminarinase enzyme class on beta-1,3 and beta-1,4 glycosidic bonds.
J.Biol.Chem., 296, 2021
6XQF
DownloadVisualize
BU of 6xqf by Molmil
Crystal structure of SCLam E144S mutant, a non-specific endo-beta-1,3(4)-glucanase from family GH16, co-crystallized with 1,3-beta-D-cellotriosyl-glucose, presenting a 1,3-beta-D-cellobiosyl-glucose at active site
Descriptor: CALCIUM ION, GH16 family protein, beta-D-glucopyranose-(1-4)-beta-D-glucopyranose-(1-3)-alpha-D-glucopyranose
Authors:Liberato, M.V, Squina, F.
Deposit date:2020-07-09
Release date:2021-02-10
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (1.58 Å)
Cite:Insights into the dual cleavage activity of the GH16 laminarinase enzyme class on beta-1,3 and beta-1,4 glycosidic bonds.
J.Biol.Chem., 296, 2021
9FZQ
DownloadVisualize
BU of 9fzq by Molmil
Proton conductance by human uncoupling protein 1 is inhibited by both purine and pyrimidine nucleotides
Descriptor: CA9865, CA9871, CARDIOLIPIN, ...
Authors:Jones, S.A, Sowton, A.P, Lacabanne, D, King, M.S, Palmer, S.M, Zogg, T, Pardon, E, Steyaert, J, Ruprecht, J.J, Kunji, E.R.S.
Deposit date:2024-07-05
Release date:2025-03-05
Last modified:2025-07-02
Method:ELECTRON MICROSCOPY (3.03 Å)
Cite:Proton conductance by human uncoupling protein 1 is inhibited by purine and pyrimidine nucleotides.
Embo J., 44, 2025

242842

PDB entries from 2025-10-08

PDB statisticsPDBj update infoContact PDBjnumon