Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

4XRG
DownloadVisualize
BU of 4xrg by Molmil
Crystal Structure of the Homospermidine Synthase (HSS) variant H296S from Blastochloris viridis in Complex with NAD, Putrescine and Agmatine
Descriptor: 1,4-DIAMINOBUTANE, 3-PYRIDINIUM-1-YLPROPANE-1-SULFONATE, ACETATE ION, ...
Authors:Krossa, S.
Deposit date:2015-01-21
Release date:2016-01-27
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.3 Å)
Cite:Comprehensive Structural Characterization of the Bacterial Homospermidine Synthase-an Essential Enzyme of the Polyamine Metabolism.
Sci Rep, 6, 2016
4XZD
DownloadVisualize
BU of 4xzd by Molmil
Crystal Structure of Wild-type HasA from Yersinia pseudotuberculosis
Descriptor: Extracellular heme acquisition hemophore HasA, PROTOPORPHYRIN IX CONTAINING FE
Authors:Kanadani, M, Hino, T, Nagano, S, Sato, T, Ozaki, S.
Deposit date:2015-02-04
Release date:2015-08-12
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:The crystal structure of heme acquisition system A from Yersinia pseudotuberculosis (HasAypt): Roles of the axial ligand Tyr75 and two distal arginines in heme binding
J.Inorg.Biochem., 151, 2015
7LEU
DownloadVisualize
BU of 7leu by Molmil
Structure of importin a2 bound to p65-NLS
Descriptor: Importin subunit alpha-1, Transcription factor p65
Authors:Florio, T.J, Lokareddy, R.K, Cingolani, G.
Deposit date:2021-01-15
Release date:2022-01-19
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.82 Å)
Cite:Differential recognition of canonical NF-kappa B dimers by Importin alpha 3.
Nat Commun, 13, 2022
7LET
DownloadVisualize
BU of 7let by Molmil
Structure of importin a2 bound to the p50- and p65-NLSs
Descriptor: Importin subunit alpha-1, Nuclear factor NF-kappa-B p105 subunit, Transcription factor p65
Authors:Florio, T.J, Lokareddy, R.K, Cingolani, G.
Deposit date:2021-01-15
Release date:2022-01-19
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Differential recognition of canonical NF-kappa B dimers by Importin alpha 3.
Nat Commun, 13, 2022
7WBK
DownloadVisualize
BU of 7wbk by Molmil
Crystal structure of Legionella pneumophila effector protein Lpg0081
Descriptor: Lpg0081, SULFATE ION
Authors:Lee, J, Kim, H, Oh, B.H.
Deposit date:2021-12-16
Release date:2022-06-15
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (2.74 Å)
Cite:Reversible modification of mitochondrial ADP/ATP translocases by paired Legionella effector proteins.
Proc.Natl.Acad.Sci.USA, 119, 2022
7W79
DownloadVisualize
BU of 7w79 by Molmil
Heme exporter HrtBA in complex with Mn-AMPPNP
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, MANGANESE (II) ION, Putative ABC transport system integral membrane protein, ...
Authors:Hisano, T, Nakamura, H, Rahman, M.M, Tosha, T, Shirouzu, M, Shiro, Y.
Deposit date:2021-12-04
Release date:2022-06-22
Last modified:2024-05-29
Method:X-RAY DIFFRACTION (3.1 Å)
Cite:Structural basis for heme detoxification by an ATP-binding cassette-type efflux pump in gram-positive pathogenic bacteria.
Proc.Natl.Acad.Sci.USA, 119, 2022
7WBM
DownloadVisualize
BU of 7wbm by Molmil
Crystal structure of Legionella pneumophila effector protein Lpg0081
Descriptor: Lpg0081, [(2R,3S,4R,5R)-5-(6-AMINOPURIN-9-YL)-3,4-DIHYDROXY-OXOLAN-2-YL]METHYL [HYDROXY-[[(2R,3S,4R,5S)-3,4,5-TRIHYDROXYOXOLAN-2-YL]METHOXY]PHOSPHORYL] HYDROGEN PHOSPHATE
Authors:Lee, J, Kim, H, Oh, B.H.
Deposit date:2021-12-17
Release date:2022-06-15
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Reversible modification of mitochondrial ADP/ATP translocases by paired Legionella effector proteins.
Proc.Natl.Acad.Sci.USA, 119, 2022
7W7C
DownloadVisualize
BU of 7w7c by Molmil
Heme exporter in the unliganded form
Descriptor: Putative ABC transport system integral membrane protein, Putative ABC transport system, ATP-binding protein, ...
Authors:Rahman, M.M, Hisano, T, Nakamura, H, Tosha, T, Shirouzu, M, Shiro, Y.
Deposit date:2021-12-04
Release date:2022-06-22
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Structural basis for heme detoxification by an ATP-binding cassette-type efflux pump in gram-positive pathogenic bacteria.
Proc.Natl.Acad.Sci.USA, 119, 2022
5V8M
DownloadVisualize
BU of 5v8m by Molmil
BG505 SOSIP.664 trimer in complex with broadly neutralizing HIV antibody 3BNC117
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ...
Authors:Lee, J.H, Cottrell, C.A, Ward, A.B.
Deposit date:2017-03-22
Release date:2017-05-03
Last modified:2024-11-06
Method:ELECTRON MICROSCOPY (4.4 Å)
Cite:A Broadly Neutralizing Antibody Targets the Dynamic HIV Envelope Trimer Apex via a Long, Rigidified, and Anionic beta-Hairpin Structure.
Immunity, 46, 2017
4XS0
DownloadVisualize
BU of 4xs0 by Molmil
Human methemoglobin in complex with the second and third NEAT domains of IsdH(F365Y/A369F/Y642A) from Staphylococcus aureus
Descriptor: CHLORIDE ION, Hemoglobin subunit alpha, Hemoglobin subunit beta, ...
Authors:Dickson, C.F, Jacques, D.A, Guss, J.M, Gell, D.A.
Deposit date:2015-01-21
Release date:2015-06-03
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2.55 Å)
Cite:The structure of haemoglobin bound to the haemoglobin receptor IsdH from Staphylococcus aureus shows disruption of the native alpha-globin haem pocket.
Acta Crystallogr.,Sect.D, 71, 2015
7W6Z
DownloadVisualize
BU of 7w6z by Molmil
Crystal structure of Kangiella koreensis RseP orthologue in complex with batimastat in space group P21
Descriptor: 4-(N-HYDROXYAMINO)-2R-ISOBUTYL-2S-(2-THIENYLTHIOMETHYL)SUCCINYL-L-PHENYLALANINE-N-METHYLAMIDE, ZINC ION, Zinc metalloprotease
Authors:Imaizumi, Y, Takanuki, K, Nogi, T.
Deposit date:2021-12-02
Release date:2022-09-07
Last modified:2024-11-06
Method:X-RAY DIFFRACTION (3.15 Å)
Cite:Mechanistic insights into intramembrane proteolysis by E. coli site-2 protease homolog RseP.
Sci Adv, 8, 2022
5UJI
DownloadVisualize
BU of 5uji by Molmil
Crystal structure of human T2-Tryptophanyl-tRNA synthetase with H130R mutation
Descriptor: Tryptophan--tRNA ligase, cytoplasmic
Authors:Xu, X, Yang, X.-L.
Deposit date:2017-01-18
Release date:2018-01-17
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (2.79 Å)
Cite:An alternative conformation of human TrpRS suggests a role of zinc in activating non-enzymatic function.
RNA Biol, 15, 2018
7W70
DownloadVisualize
BU of 7w70 by Molmil
Crystal structure of the PDZ-C domain fragment of Kangiella koreensis RseP orthologue
Descriptor: Zinc metalloprotease
Authors:Miyoshi, K, Nogi, T.
Deposit date:2021-12-02
Release date:2022-09-07
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.15 Å)
Cite:Mechanistic insights into intramembrane proteolysis by E. coli site-2 protease homolog RseP.
Sci Adv, 8, 2022
4XYB
DownloadVisualize
BU of 4xyb by Molmil
GRANULICELLA M. FORMATE DEHYDROGENASE (FDH) IN COMPLEX WITH NADP(+) AND NaN3
Descriptor: 1,2-ETHANEDIOL, AZIDE ION, Formate dehydrogenase, ...
Authors:Cendron, L, Fogal, S, Beneventi, E, Bergantino, E.
Deposit date:2015-02-02
Release date:2015-07-08
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (1.38 Å)
Cite:Structural basis for double cofactor specificity in a new formate dehydrogenase from the acidobacterium Granulicella mallensis MP5ACTX8.
Appl.Microbiol.Biotechnol., 99, 2015
7LK5
DownloadVisualize
BU of 7lk5 by Molmil
X-ray radiation damage series on Thaumatin at 277K, multi-conformer model, dataset 3
Descriptor: L(+)-TARTARIC ACID, Thaumatin I
Authors:Yabukarski, F, Doukov, T, Herschlag, D.
Deposit date:2021-02-01
Release date:2022-02-23
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.38 Å)
Cite:Evaluating the impact of X-ray damage on conformational heterogeneity in room-temperature (277 K) and cryo-cooled protein crystals.
Acta Crystallogr D Struct Biol, 78, 2022
7LND
DownloadVisualize
BU of 7lnd by Molmil
X-ray radiation damage series on Thaumatin at 277K, multi-conformer model, dataset 4 (merged)
Descriptor: L(+)-TARTARIC ACID, Thaumatin I
Authors:Yabukarski, F, Doukov, T, Herschlag, D.
Deposit date:2021-02-06
Release date:2022-02-23
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (1.22 Å)
Cite:Evaluating the impact of X-ray damage on conformational heterogeneity in room-temperature (277 K) and cryo-cooled protein crystals.
Acta Crystallogr D Struct Biol, 78, 2022
7W6X
DownloadVisualize
BU of 7w6x by Molmil
Crystal structure of E. coli RseP in complex with batimastat
Descriptor: 4-(N-HYDROXYAMINO)-2R-ISOBUTYL-2S-(2-THIENYLTHIOMETHYL)SUCCINYL-L-PHENYLALANINE-N-METHYLAMIDE, Regulator of sigma-E protease RseP, ZINC ION
Authors:Takanuki, K, Imaizumi, Y, Nogi, T.
Deposit date:2021-12-02
Release date:2022-09-07
Method:X-RAY DIFFRACTION (3.2 Å)
Cite:Mechanistic insights into intramembrane proteolysis by E. coli site-2 protease homolog RseP.
Sci Adv, 8, 2022
4XQG
DownloadVisualize
BU of 4xqg by Molmil
Crystal Structure of the Homospermidine Synthase (HSS) variant E237Q from Blastochloris viridis in Complex with NAD.
Descriptor: 3-PYRIDINIUM-1-YLPROPANE-1-SULFONATE, ACETATE ION, AGMATINE, ...
Authors:Krossa, S.
Deposit date:2015-01-19
Release date:2016-01-27
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.417 Å)
Cite:Comprehensive Structural Characterization of the Bacterial Homospermidine Synthase-an Essential Enzyme of the Polyamine Metabolism.
Sci Rep, 6, 2016
7LFG
DownloadVisualize
BU of 7lfg by Molmil
X-ray radiation damage series on Thaumatin at 277K, crystal structure, dataset 1
Descriptor: L(+)-TARTARIC ACID, Thaumatin I
Authors:Yabukarski, F, Doukov, T, Herschlag, D.
Deposit date:2021-01-17
Release date:2022-02-23
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (1.22 Å)
Cite:Evaluating the impact of X-ray damage on conformational heterogeneity in room-temperature (277 K) and cryo-cooled protein crystals.
Acta Crystallogr D Struct Biol, 78, 2022
7LJV
DownloadVisualize
BU of 7ljv by Molmil
X-ray radiation damage series on Thaumatin at 277K, crystal structure, dataset 4
Descriptor: L(+)-TARTARIC ACID, Thaumatin I
Authors:Yabukarski, F, Doukov, T, Herschlag, D.
Deposit date:2021-01-31
Release date:2022-02-23
Last modified:2024-10-09
Method:X-RAY DIFFRACTION (1.48 Å)
Cite:Evaluating the impact of X-ray damage on conformational heterogeneity in room-temperature (277 K) and cryo-cooled protein crystals.
Acta Crystallogr D Struct Biol, 78, 2022
7W6Y
DownloadVisualize
BU of 7w6y by Molmil
Crystal structure of Kangiella koreensis RseP orthologue in complex with batimastat in space group P1
Descriptor: 4-(N-HYDROXYAMINO)-2R-ISOBUTYL-2S-(2-THIENYLTHIOMETHYL)SUCCINYL-L-PHENYLALANINE-N-METHYLAMIDE, Anti sigma-E protein, RseA, ...
Authors:Imaizumi, Y, Takanuki, K, Nogi, T.
Deposit date:2021-12-02
Release date:2022-09-07
Last modified:2024-11-06
Method:X-RAY DIFFRACTION (3.1 Å)
Cite:Mechanistic insights into intramembrane proteolysis by E. coli site-2 protease homolog RseP.
Sci Adv, 8, 2022
7LNC
DownloadVisualize
BU of 7lnc by Molmil
X-ray radiation damage series on Thaumatin at 277K, multi-conformer model, dataset 3 (merged)
Descriptor: L(+)-TARTARIC ACID, Thaumatin I
Authors:Yabukarski, F, Doukov, T, Herschlag, D.
Deposit date:2021-02-06
Release date:2022-02-23
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.22 Å)
Cite:Evaluating the impact of X-ray damage on conformational heterogeneity in room-temperature (277 K) and cryo-cooled protein crystals.
Acta Crystallogr D Struct Biol, 78, 2022
7LK6
DownloadVisualize
BU of 7lk6 by Molmil
X-ray radiation damage series on Thaumatin at 277K, multi-conformer model, dataset 4
Descriptor: L(+)-TARTARIC ACID, Thaumatin I
Authors:Yabukarski, F, Doukov, T, Herschlag, D.
Deposit date:2021-02-01
Release date:2022-02-23
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (1.48 Å)
Cite:Evaluating the impact of X-ray damage on conformational heterogeneity in room-temperature (277 K) and cryo-cooled protein crystals.
Acta Crystallogr D Struct Biol, 78, 2022
4XX0
DownloadVisualize
BU of 4xx0 by Molmil
CoA bound to pig GTP-specific succinyl-CoA synthetase
Descriptor: COENZYME A, GLYCEROL, PHOSPHATE ION, ...
Authors:Fraser, M.E, Huang, J, Malhi, M.
Deposit date:2015-01-29
Release date:2015-08-12
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Structure of GTP-specific succinyl-CoA synthetase in complex with CoA.
Acta Crystallogr.,Sect.F, 71, 2015
7W9A
DownloadVisualize
BU of 7w9a by Molmil
Dynamics of lipid displacement inside the hydrophobic cavity of a non-specific lipid transfer protein from Solanum melongena
Descriptor: LAURIC ACID, Non-specific lipid-transfer protein
Authors:Madni, Z.K, Kumar, A, Salunke, D.M.
Deposit date:2021-12-09
Release date:2022-07-13
Last modified:2024-11-06
Method:X-RAY DIFFRACTION (2.12 Å)
Cite:Dynamics of lipid displacement inside the hydrophobic cavity of a nonspecific lipid transfer protein from Solanum melongena .
J.Biomol.Struct.Dyn., 41, 2023

227111

PDB entries from 2024-11-06

PDB statisticsPDBj update infoContact PDBjnumon