PDB: 45817 resultsInfo pagesStatus searchChemie searchBIRD

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7SU3	CryoEM structure of DNA-PK complex VII Descriptor: ADENOSINE-5'-TRIPHOSPHATE, DNA (5'-D(*AP*AP*GP*CP*AP*GP*TP*AP*GP*AP*G)-3'), DNA (5'-D(*GP*CP*AP*TP*GP*CP*TP*CP*TP*AP*CP*TP*GP*CP*TP*TP*CP*GP*AP*TP*AP*TP*CP*G)-3'), ... Authors: Chen, X, Liu, L, Gellert, M, Yang, W. Deposit date: 2021-11-16 Release date: 2022-01-12 Last modified: 2024-06-05 Method: ELECTRON MICROSCOPY (3.3 Å) Cite: Autophosphorylation transforms DNA-PK from protecting to processing DNA ends. Mol.Cell, 82, 2022
2W8L	Y-family DNA polymerase Dpo4 bypassing N2-naphthyl-guanine adduct in anti orientation Descriptor: 2'-DEOXYGUANOSINE-5'-TRIPHOSPHATE, 5'-D(*GP*GP*GP*GP*GP*AP*AP*GP*GP*AP *TP*TP*CP*DOC)-3', 5'-D(*TP*CP*AP*CP*N2GP*GP*AP*AP*TP*CP *CP*TP*TP*CP*CP*CP*CP*C)-3', ... Authors: Eoff, R.L, Zhang, H, Egli, M, Guengerich, F.P. Deposit date: 2009-01-16 Release date: 2009-01-27 Last modified: 2023-12-13 Method: X-RAY DIFFRACTION (3 Å) Cite: Versatility of Y-Family Sulfolobus Solfataricus DNA Polymerase Dpo4 in Translesion Synthesis Past Bulky N2-Alkylguanine Adducts. J.Biol.Chem., 284, 2009
2W8K	Y-family DNA polymerase Dpo4 bypassing N2-naphthyl-guanine adduct in syn orientation Descriptor: 2'-DEOXYGUANOSINE-5'-TRIPHOSPHATE, 5'-D(*GP*GP*GP*GP*GP*AP*AP*GP*GP*AP *TP*TP*CP*DOC)-3', 5'-D(*TP*CP*AP*CP*N2GP*GP*AP*AP*TP*CP*CP *TP*TP*CP*CP*CP*CP*C)-3', ... Authors: Eoff, R.L, Zhang, H, Egli, M, Guengerich, F.P. Deposit date: 2009-01-16 Release date: 2009-01-27 Last modified: 2023-12-13 Method: X-RAY DIFFRACTION (3.1 Å) Cite: Versatility of Y-Family Sulfolobus Solfataricus DNA Polymerase Dpo4 in Translesion Synthesis Past Bulky N2-Alkylguanine Adducts. J.Biol.Chem., 284, 2009
3D0A	Human p53 core domain with hot spot mutation R249S and second site suppressor mutation H168R in sequence-specific complex with DNA Descriptor: Cellular tumor antigen p53, DNA (5'-D(*DCP*DGP*DGP*DGP*DCP*DAP*DTP*DGP*DCP*DCP*DCP*DG)-3'), ZINC ION Authors: Suad, O, Rozenberg, H, Shakked, Z. Deposit date: 2008-05-01 Release date: 2009-01-20 Last modified: 2023-11-01 Method: X-RAY DIFFRACTION (1.8 Å) Cite: Structural basis of restoring sequence-specific DNA binding and transactivation to mutant p53 by suppressor mutations J.Mol.Biol., 385, 2009
2V4Q	Post-insertion complex of the Y-family DNA polymerase Dpo4 with M1dG containing template DNA Descriptor: 2'-DEOXYGUANOSINE-5'-TRIPHOSPHATE, 5'-D(*GP*GP*GP*GP*GP*AP*AP*GP*GP*AP *TP*TP*CP*C)-3', 5'-D(*TP*CP*AP*C M1GP*GP*AP*AP*TP*CP*CP *TP*TP*CP*CP*CP*CP*C)-3', ... Authors: Eoff, R.L, Stafford, J.B, Szekely, J, Rizzo, C.J, Egli, M, Guengerich, F.P, Marnett, L.J. Deposit date: 2008-09-26 Release date: 2009-06-16 Last modified: 2023-12-13 Method: X-RAY DIFFRACTION (2.6 Å) Cite: Structural and Functional Analysis of Sulfolobus Solfataricus Y-Family DNA Polymerase Dpo4-Catalyzed Bypass of the Malondialdehyde-Deoxyguanosine Adduct. Biochemistry, 48, 2009
2VA2	Complex structure of Sulfolobus solfataricus DPO4 and DNA duplex containing a hydrophobic thymine isostere 2,4-difluorotoluene nucleotide in the template strand Descriptor: 2',3'-DIDEOXYCYTIDINE 5'-TRIPHOSPHATE, 5'-D(*GP*GP*GP*GP*GP*AP*AP*GP*GP*AP *CP*TP*A)-3', 5'-D(*TP*TP*CP*AP*GP*DFTP*AP*GP*TP*CP*CP *TP*TP*CP*CP*CP*CP*C)-3', ... Authors: Irimia, A, Pallan, P.S, Egli, M. Deposit date: 2007-08-28 Release date: 2007-10-30 Last modified: 2023-12-13 Method: X-RAY DIFFRACTION (2.8 Å) Cite: Structure and Activity of Y-Class DNA Polymerase Dpo4 from Sulfolobus Solfataricus with Templates Containing the Hydrophobic Thymine Analog 2,4- Difluorotoluene. J.Biol.Chem., 282, 2007
2RDI	Snapshots of a Y-family DNA polymerase in replication: Dpo4 in apo and binary/ternary complex forms Descriptor: DI(HYDROXYETHYL)ETHER, DNA polymerase IV, GLYCEROL Authors: Wong, J.H.Y, Ling, H. Deposit date: 2007-09-24 Release date: 2008-06-24 Last modified: 2023-08-30 Method: X-RAY DIFFRACTION (1.92 Å) Cite: Snapshots of a Y-family DNA polymerase in replication: substrate-induced conformational transitions and implications for fidelity of Dpo4. J.Mol.Biol., 379, 2008
4IBV	Human p53 core domain with hot spot mutation R273C and second-site suppressor mutation S240R in sequence-specific complex with DNA Descriptor: 1,2-ETHANEDIOL, Cellular tumor antigen p53, DNA (5'-D(*CP*GP*GP*GP*CP*AP*TP*GP*CP*CP*CP*G)-3'), ... Authors: Eldar, A, Rozenberg, H, Diskin-Posner, Y, Shakked, Z. Deposit date: 2012-12-09 Release date: 2013-08-14 Last modified: 2023-09-20 Method: X-RAY DIFFRACTION (2.1 Å) Cite: Structural studies of p53 inactivation by DNA-contact mutations and its rescue by suppressor mutations via alternative protein-DNA interactions. Nucleic Acids Res., 41, 2013
2UVR	Crystal structures of mutant Dpo4 DNA polymerases with 8-oxoG containing DNA template-primer constructs Descriptor: 2'-DEOXYGUANOSINE-5'-TRIPHOSPHATE, 5'-D(*GP*GP*GP*GP*GP*AP*AP*GP*GP*AP *TP*TP*CP*C)-3', 5'-D(*TP*CP*AP*CP*8OGP*GP*AP*AP*TP*CP *CP*TP*TP*CP*CP*CP*CP*C)-3', ... Authors: Irimia, A, Egli, M. Deposit date: 2007-03-13 Release date: 2007-05-08 Last modified: 2023-12-13 Method: X-RAY DIFFRACTION (2.9 Å) Cite: Hydrogen Bonding of 7,8-Dihydro-8-Oxodeoxyguanosine with a Charged Residue in the Little Finger Domain Determines Miscoding Events in Sulfolobus Solfataricus DNA Polymerase Dpo4. J.Biol.Chem., 282, 2007
2V9W	Complex structure of Sulfolobus solfataricus DPO4 and DNA duplex containing a hydrophobic thymine isostere 2,4-difluorotoluene nucleotide in the template strand Descriptor: 2',3'-DIDEOXYCYTIDINE 5'-TRIPHOSPHATE, 5'-D(*GP*GP*GP*GP*GP*AP*AP*GP*GP*AP *CP*TP*G)-3', 5'-D(*TP*TP*CP*AP*GP*DFTP*AP*GP*TP*CP*CP *TP*TP*CP*CP*CP*CP*C)-3', ... Authors: Irimia, A, Pallan, P.S, Egli, M. Deposit date: 2007-08-27 Release date: 2007-10-30 Last modified: 2023-12-13 Method: X-RAY DIFFRACTION (3 Å) Cite: Structure and Activity of Y-Class DNA Polymerase Dpo4 from Sulfolobus Solfataricus with Templates Containing the Hydrophobic Thymine Analog 2,4-Difluorotoluene. J.Biol.Chem., 282, 2007
2UVW	Crystal structures of mutant Dpo4 DNA polymerases with 8-oxoG containing DNA template-primer constructs Descriptor: 2'-DEOXYGUANOSINE-5'-TRIPHOSPHATE, 5'-D(*GP*GP*GP*GP*GP*AP*AP*GP*GP*AP *TP*TP*CP*A)-3', 5'-D(*TP*CP*AP*CP*8OGP*GP*AP*AP*TP*CP *CP*TP*TP*CP*CP*CP*CP*C)-3', ... Authors: Irimia, A, Egli, M. Deposit date: 2007-03-14 Release date: 2007-05-08 Last modified: 2023-12-13 Method: X-RAY DIFFRACTION (2.09 Å) Cite: Hydrogen Bonding of 7,8-Dihydro-8-Oxodeoxyguanosine with a Charged Residue in the Little Finger Domain Determines Miscoding Events in Sulfolobus Solfataricus DNA Polymerase Dpo4. J.Biol.Chem., 282, 2007
2VA3	Complex structure of Sulfolobus solfataricus DPO4 and DNA duplex containing a hydrophobic thymine isostere 2,4-difluorotoluene nucleotide in the template strand Descriptor: 2'-DEOXYGUANOSINE-5'-TRIPHOSPHATE, 5'-D(*GP*GP*GP*GP*GP*AP*AP*GP*GP*AP *CP*TP*A)-3', 5'-D(*TP*TP*CP*AP*DFTP*TP*AP*GP*TP*CP*CP *TP*TP*CP*CP*CP*CP*C)-3', ... Authors: Irimia, A, Pallan, P.S, Egli, M. Deposit date: 2007-08-28 Release date: 2007-10-30 Last modified: 2023-12-13 Method: X-RAY DIFFRACTION (2.98 Å) Cite: Structure and Activity of Y-Class DNA Polymerase Dpo4 from Sulfolobus Solfataricus with Templates Containing the Hydrophobic Thymine Analog 2,4-Difluorotoluene. J.Biol.Chem., 282, 2007
2UVU	Crystal structures of mutant Dpo4 DNA polymerases with 8-oxoG containing DNA template-primer constructs Descriptor: 2'-DEOXYGUANOSINE-5'-TRIPHOSPHATE, 5'-D(*GP*GP*GP*GP*GP*AP*AP*GP*GP*AP *TP*TP*CP*A)-3', 5'-D(*TP*CP*AP*CP*8OGP*GP*AP*AP*TP*CP *CP*TP*TP*CP*CP*CP*CP*C)-3', ... Authors: Irimia, A, Egli, M. Deposit date: 2007-03-14 Release date: 2007-05-08 Last modified: 2023-12-13 Method: X-RAY DIFFRACTION (2.7 Å) Cite: Hydrogen Bonding of 7,8-Dihydro-8-Oxodeoxyguanosine with a Charged Residue in the Little Finger Domain Determines Miscoding Events in Sulfolobus Solfataricus DNA Polymerase Dpo4. J.Biol.Chem., 282, 2007
2UVV	Crystal structures of mutant Dpo4 DNA polymerases with 8-oxoG containing DNA template-primer constructs Descriptor: 2'-DEOXYGUANOSINE-5'-TRIPHOSPHATE, 5'-D(*GP*GP*GP*GP*GP*AP*AP*GP*GP*AP *TP*TP*CP*C)-3', 5'-D(*TP*CP*AP*CP*8OGP*GP*AP*AP*TP*CP *CP*TP*TP*CP*CP*CP*CP*C)-3', ... Authors: Irimia, A, Egli, M. Deposit date: 2007-03-14 Release date: 2007-05-08 Last modified: 2023-12-13 Method: X-RAY DIFFRACTION (2.2 Å) Cite: Hydrogen Bonding of 7,8-Dihydro-8-Oxodeoxyguanosine with a Charged Residue in the Little Finger Domain Determines Miscoding Events in Sulfolobus Solfataricus DNA Polymerase Dpo4. J.Biol.Chem., 282, 2007
4H10	Intermolecular recognition revealed by the complex structure of human CLOCK-BMAL1 basic Helix-Loop-Helix domains with E-box DNA Descriptor: Aryl hydrocarbon receptor nuclear translocator-like protein 1, Circadian locomoter output cycles protein kaput, E-box DNA antisense strand, ... Authors: Wang, Z, Su, X.-D. Deposit date: 2012-09-10 Release date: 2012-12-26 Last modified: 2024-02-28 Method: X-RAY DIFFRACTION (2.402 Å) Cite: Intermolecular recognition revealed by the complex structure of human CLOCK-BMAL1 basic helix-loop-helix domains with E-box DNA. Cell Res., 23, 2013
4IBU	Human p53 core domain with hot spot mutation R273C and second-site suppressor mutation T284R in sequence-specific complex with DNA Descriptor: 1,2-ETHANEDIOL, ACETATE ION, Cellular tumor antigen p53, ... Authors: Eldar, A, Rozenberg, H, Diskin-Posner, Y, Shakked, Z. Deposit date: 2012-12-09 Release date: 2013-08-14 Last modified: 2023-09-20 Method: X-RAY DIFFRACTION (1.7 Å) Cite: Structural studies of p53 inactivation by DNA-contact mutations and its rescue by suppressor mutations via alternative protein-DNA interactions. Nucleic Acids Res., 41, 2013
4IBW	Human p53 core domain with hot spot mutation R273H and second-site suppressor mutation T284R in sequence-specific complex with DNA Descriptor: 1,2-ETHANEDIOL, Cellular tumor antigen p53, DNA (5'-D(*CP*GP*GP*GP*CP*AP*TP*GP*CP*CP*CP*G)-3'), ... Authors: Eldar, A, Rozenberg, H, Diskin-Posner, Y, Shakked, Z. Deposit date: 2012-12-09 Release date: 2013-08-14 Last modified: 2023-09-20 Method: X-RAY DIFFRACTION (1.791 Å) Cite: Structural studies of p53 inactivation by DNA-contact mutations and its rescue by suppressor mutations via alternative protein-DNA interactions. Nucleic Acids Res., 41, 2013
2ZHG	Crystal structure of SoxR in complex with DNA Descriptor: 2,3-DIHYDROXY-1,4-DITHIOBUTANE, DNA (5'-D(*DGP*DCP*DCP*DTP*DCP*DAP*DAP*DGP*DTP*DTP*DAP*DAP*DCP*DTP*DTP*DGP*DAP*DGP*DGP*DC)-3'), FE2/S2 (INORGANIC) CLUSTER, ... Authors: Watanabe, S, Kita, A, Kobayashi, K, Miki, K. Deposit date: 2008-02-05 Release date: 2008-03-25 Last modified: 2024-03-13 Method: X-RAY DIFFRACTION (2.8 Å) Cite: Crystal structure of the [2Fe-2S] oxidative-stress sensor SoxR bound to DNA Proc.Natl.Acad.Sci.Usa, 105, 2008
3LWM	Structure of the large fragment of thermus aquaticus DNA polymerase I in complex with a blunt-ended DNA and ddATP Descriptor: 2',3'-dideoxyadenosine triphosphate, ACETATE ION, DNA (5'-D(*GP*AP*CP*CP*AP*CP*GP*GP*CP*GP*CP*(2DA))-3'), ... Authors: Marx, A, Diederichs, K, Obeid, S. Deposit date: 2010-02-24 Release date: 2010-05-05 Last modified: 2023-11-01 Method: X-RAY DIFFRACTION (2.186 Å) Cite: Replication through an abasic DNA lesion: structural basis for adenine selectivity Embo J., 29, 2010
1WTO	Hyperthermophile chromosomal protein SAC7D double mutant V26F/M29F in complex with DNA GCGATCGC Descriptor: 5'-D(*GP*CP*GP*AP*TP*CP*GP*C)-3', DNA-binding proteins 7a/7b/7d Authors: Chen, C.-Y, Ko, T.-P, Lin, T.-W, Chou, C.-C, Chen, C.-J, Wang, A.H.-J. Deposit date: 2004-11-29 Release date: 2005-02-22 Last modified: 2024-05-29 Method: X-RAY DIFFRACTION (1.5 Å) Cite: Probing the DNA kink structure induced by the hyperthermophilic chromosomal protein Sac7d NUCLEIC ACIDS RES., 33, 2005
1WTX	Hyperthermophile chromosomal protein SAC7D single mutant V26A in complex with DNA GTAATTAC Descriptor: 5'-D(*GP*TP*AP*AP*TP*TP*AP*C)-3', DNA-binding proteins 7a/7b/7d Authors: Chen, C.-Y, Ko, T.-P, Lin, T.-W, Chou, C.-C, Chen, C.-J, Wang, A.H.-J. Deposit date: 2004-11-29 Release date: 2005-02-22 Last modified: 2023-10-25 Method: X-RAY DIFFRACTION (2.2 Å) Cite: Probing the DNA kink structure induced by the hyperthermophilic chromosomal protein Sac7d NUCLEIC ACIDS RES., 33, 2005
1WTP	Hyperthermophile chromosomal protein SAC7D single mutant M29F in complex with DNA GCGA(UBr)CGC Descriptor: 5'-D(*GP*CP*GP*AP*(BRU)P*CP*GP*C)-3', DNA-binding proteins 7a/7b/7d Authors: Chen, C.-Y, Ko, T.-P, Lin, T.-W, Chou, C.-C, Chen, C.-J, Wang, A.H.-J. Deposit date: 2004-11-29 Release date: 2005-02-22 Last modified: 2023-10-25 Method: X-RAY DIFFRACTION (1.9 Å) Cite: Probing the DNA kink structure induced by the hyperthermophilic chromosomal protein Sac7d NUCLEIC ACIDS RES., 33, 2005
1WTR	Hyperthermophile chromosomal protein SAC7D single mutant M29A in complex with DNA GCGATCGC Descriptor: 5'-D(*GP*CP*GP*AP*TP*CP*GP*C)-3', DNA-binding proteins 7a/7b/7d Authors: Chen, C.-Y, Ko, T.-P, Lin, T.-W, Chou, C.-C, Chen, C.-J, Wang, A.H.-J. Deposit date: 2004-11-29 Release date: 2005-02-22 Last modified: 2023-10-25 Method: X-RAY DIFFRACTION (1.8 Å) Cite: Probing the DNA kink structure induced by the hyperthermophilic chromosomal protein Sac7d NUCLEIC ACIDS RES., 33, 2005
1WTW	Hyperthermophile chromosomal protein SAC7D single mutant V26A in complex with DNA GCGATCGC Descriptor: 5'-D(*GP*CP*GP*AP*TP*CP*GP*C)-3', DNA-binding proteins 7a/7b/7d Authors: Chen, C.-Y, Ko, T.-P, Lin, T.-W, Chou, C.-C, Chen, C.-J, Wang, A.H.-J. Deposit date: 2004-11-29 Release date: 2005-02-22 Last modified: 2023-10-25 Method: X-RAY DIFFRACTION (2.2 Å) Cite: Probing the DNA kink structure induced by the hyperthermophilic chromosomal protein Sac7d NUCLEIC ACIDS RES., 33, 2005
1WTQ	Hyperthermophile chromosomal protein SAC7D single mutant M29F in complex with DNA GTAATTAC Descriptor: 5'-D(*GP*TP*AP*AP*TP*TP*AP*C)-3', DNA-binding proteins 7a/7b/7d Authors: Chen, C.-Y, Ko, T.-P, Lin, T.-W, Chou, C.-C, Chen, C.-J, Wang, A.H.-J. Deposit date: 2004-11-29 Release date: 2005-02-22 Last modified: 2023-10-25 Method: X-RAY DIFFRACTION (1.7 Å) Cite: Probing the DNA kink structure induced by the hyperthermophilic chromosomal protein Sac7d NUCLEIC ACIDS RES., 33, 2005

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