Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

8J79
DownloadVisualize
BU of 8j79 by Molmil
Bovine Xanthine Oxidoreductase Crystallized with oxypurinol
Descriptor: CALCIUM ION, CARBONATE ION, DIOXOTHIOMOLYBDENUM(VI) ION, ...
Authors:Okamoto, K, Sekine, M.
Deposit date:2023-04-27
Release date:2023-05-24
Last modified:2024-05-29
Method:X-RAY DIFFRACTION (1.99 Å)
Cite:Bovine Xanthine Oxidoreductase Crystallized with oxypurinol
To Be Published
8J74
DownloadVisualize
BU of 8j74 by Molmil
Human high-affinity choline transporter CHT1 in the HC-3-bound outward-facing open conformation, dimeric state
Descriptor: (2S,2'S)-2,2'-biphenyl-4,4'-diylbis(2-hydroxy-4,4-dimethylmorpholin-4-ium), CHOLESTEROL HEMISUCCINATE, HEXADECANE, ...
Authors:Gao, Y, Qiu, Y, Zhao, Y.
Deposit date:2023-04-27
Release date:2024-04-03
Last modified:2024-05-01
Method:ELECTRON MICROSCOPY (3.6 Å)
Cite:Transport mechanism of presynaptic high-affinity choline uptake by CHT1.
Nat.Struct.Mol.Biol., 31, 2024
8J6Y
DownloadVisualize
BU of 8j6y by Molmil
Crystal structure of class A beta-lactamase PSE-4 WT- Apo state
Descriptor: Beta-lactamase PSE-4, SULFATE ION
Authors:Sarkar, M, Bhattacharya, S, Hazra, S.
Deposit date:2023-04-26
Release date:2024-05-01
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Crystal structure of class A beta-lactamase PSE-4 WT- Apo state
To be published
8J6X
DownloadVisualize
BU of 8j6x by Molmil
Crystal structure of SARS-CoV2 N-NTD complexed with 5-Benzyloxygramine derivative (P3-8)
Descriptor: Nucleoprotein, ~{N}-methyl-~{N}-[(5-phenylmethoxy-1~{H}-indol-3-yl)methyl]propan-1-amine
Authors:Hong, J.Y, Hou, M.H.
Deposit date:2023-04-26
Release date:2024-02-07
Last modified:2024-03-06
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Targeting protein-protein interaction interfaces with antiviral N protein inhibitor in SARS-CoV-2.
Biophys.J., 123, 2024
8J6V
DownloadVisualize
BU of 8j6v by Molmil
Structure of yeast Arginyl-tRNA-protein transferase 1
Descriptor: arginyltransferase
Authors:Yashiro, Y, Tomita, K.
Deposit date:2023-04-26
Release date:2023-06-07
Last modified:2024-05-29
Method:X-RAY DIFFRACTION (3.4 Å)
Cite:Structure of Arginyl-tRNA-protein transferase 1
To Be Published
8J6R
DownloadVisualize
BU of 8j6r by Molmil
Cryo-EM structure of the MK-6892-bound human HCAR2-Gi1 complex
Descriptor: 2-[[2,2-dimethyl-3-[3-(5-oxidanylpyridin-2-yl)-1,2,4-oxadiazol-5-yl]propanoyl]amino]cyclohexene-1-carboxylic acid, 2-acetamido-2-deoxy-beta-D-glucopyranose, Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2, ...
Authors:Mao, C, Gao, M, Zang, S, Zhu, Y, Ma, X, Zhang, Y.
Deposit date:2023-04-26
Release date:2023-12-06
Method:ELECTRON MICROSCOPY (2.76 Å)
Cite:Orthosteric and allosteric modulation of human HCAR2 signaling complex.
Nat Commun, 14, 2023
8J6Q
DownloadVisualize
BU of 8j6q by Molmil
Cryo-EM structure of the 3-HB and compound 9n-bound human HCAR2-Gi1 complex
Descriptor: (3R)-3-hydroxybutanoic acid, 2-acetamido-2-deoxy-beta-D-glucopyranose, 7-methyl-N-[(2R)-1-phenoxypropan-2-yl]-3-(4-propan-2-ylphenyl)pyrazolo[1,5-a]pyrimidine-6-carboxamide, ...
Authors:Mao, C, Gao, M, Zang, S, Zhu, Y, Ma, X, Zhang, Y.
Deposit date:2023-04-26
Release date:2023-12-06
Method:ELECTRON MICROSCOPY (2.6 Å)
Cite:Orthosteric and allosteric modulation of human HCAR2 signaling complex.
Nat Commun, 14, 2023
8J6P
DownloadVisualize
BU of 8j6p by Molmil
Cryo-EM structure of the MK-6892-bound human HCAR2-Gi1 complex
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 7-methyl-N-[(2R)-1-phenoxypropan-2-yl]-3-(4-propan-2-ylphenyl)pyrazolo[1,5-a]pyrimidine-6-carboxamide, CHOLESTEROL, ...
Authors:Mao, C, Gao, M, Zang, S, Zhu, Y, Ma, X, Zhang, Y.
Deposit date:2023-04-26
Release date:2023-12-06
Method:ELECTRON MICROSCOPY (2.55 Å)
Cite:Orthosteric and allosteric modulation of human HCAR2 signaling complex.
Nat Commun, 14, 2023
8J6N
DownloadVisualize
BU of 8j6n by Molmil
Crystal structure of Cystathionine gamma-lyase in complex with compound 1
Descriptor: 1,2-ETHANEDIOL, Cystathionine gamma-lyase, GLYCEROL, ...
Authors:Hibi, R, Toma-Fukai, S, Shimizu, T, Hanaoka, K.
Deposit date:2023-04-26
Release date:2024-02-14
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Discovery of a cystathionine gamma-lyase (CSE) selective inhibitor targeting active-site pyridoxal 5'-phosphate (PLP) via Schiff base formation.
Sci Rep, 13, 2023
8J6I
DownloadVisualize
BU of 8j6i by Molmil
Cryo-EM structure of thehydroxycarboxylic acid receptor 2-Gi protein complex bound MK-6892
Descriptor: 2-[[2,2-dimethyl-3-[3-(5-oxidanylpyridin-2-yl)-1,2,4-oxadiazol-5-yl]propanoyl]amino]cyclohexene-1-carboxylic acid, Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2, Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1, ...
Authors:Yuan, Q, Zhu, S, Duan, J, Xu, H.E, Duan, X.
Deposit date:2023-04-26
Release date:2024-04-03
Method:ELECTRON MICROSCOPY (2.92 Å)
Cite:Molecular recognition of niacin and lipid-lowering drugs by the human hydroxycarboxylic acid receptor 2.
Cell Rep, 42, 2023
8J6G
DownloadVisualize
BU of 8j6g by Molmil
Neutron structure of copper amine oxidase from Arthrobacter globiformis anaerobically reduced by phenylethylamine at pD 9.0
Descriptor: 2-PHENYLETHYLAMINE, COPPER (II) ION, Phenylethylamine oxidase, ...
Authors:Murakawa, T, Okajima, T.
Deposit date:2023-04-25
Release date:2023-09-20
Method:NEUTRON DIFFRACTION (1.09 Å), X-RAY DIFFRACTION
Cite:Neutron Crystallography of a Semiquinone Radical Intermediate of Copper Amine Oxidase Reveals a Substrate-Assisted Conformational Change of the Peptidyl Quinone Cofactor
Acs Catalysis, 2023
8J6F
DownloadVisualize
BU of 8j6f by Molmil
Cryo-EM structure of the Tocilizumab Fab/IL-6R complex
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Heavy chain of Tocilizumab Fab, IL6R-D2 peptide, ...
Authors:She, J, Chen, L.
Deposit date:2023-04-25
Release date:2024-03-27
Method:ELECTRON MICROSCOPY (3.3 Å)
Cite:Cryo-EM structures of tocilizumab and sarilumab Fabs in complex with IL-6R
To Be Published
8J63
DownloadVisualize
BU of 8j63 by Molmil
The crystal structure of TrkA kinase in complex with 4^6-methyl-N-(3-(4-methyl-1H-imidazol-1-yl)-5-(trifluoromethyl)phenyl)-11-oxo-5-oxa-10,14-diaza-1(3,6)-imidazo[1,2-b]pyridazina-4(1,3)-benzenacyclotetradecaphan-2-yne-4^5-carboxamide
Descriptor: 4^6-methyl-N-(3-(4-methyl-1H-imidazol-1-yl)-5-(trifluoromethyl)phenyl)-11-oxo-5-oxa-10,14-diaza-1(3,6)-imidazo[1,2-b]pyridazina-4(1,3)-benzenacyclotetradecaphan-2-yne-4^5-carboxamide, High affinity nerve growth factor receptor
Authors:Zhang, Z.M, Wang, Y.J.
Deposit date:2023-04-24
Release date:2023-09-20
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (3.0005 Å)
Cite:Structure-Based Optimization of the Third Generation Type II Macrocycle TRK Inhibitors with Improved Activity against Solvent-Front, xDFG, and Gatekeeper Mutations.
J.Med.Chem., 66, 2023
8J62
DownloadVisualize
BU of 8j62 by Molmil
Cryo-EM structure of APOBEC3G-Vif complex
Descriptor: APOBEC3G, Core binding factor beta, RNA (5'-R(*CP*GP*GP*UP*UP*GP*AP*UP*UP*GP*UP*UP*UP*UP*AP*AP*CP*AP*A)-3'), ...
Authors:Kouno, T, Shibata, S, Hyun, J, Kim, T.G, Wolf, M.
Deposit date:2023-04-24
Release date:2023-07-19
Last modified:2024-07-03
Method:ELECTRON MICROSCOPY (2.5 Å)
Cite:Structural insights into RNA bridging between HIV-1 Vif and antiviral factor APOBEC3G.
Nat Commun, 14, 2023
8J61
DownloadVisualize
BU of 8j61 by Molmil
The crystal structure of TrkA kinase in complex with 4^6-methyl-N-(3-(4-methyl-1H-imidazol-1-yl)-5-(trifluoromethyl)phenyl)-14-oxo-5-oxa-13-aza-1(3,6)-imidazo[1,2-b]pyridazina-4(1,3)-benzenacyclotetradecaphan-2-yne-4^5-carboxamide
Descriptor: 4^6-methyl-N-(3-(4-methyl-1H-imidazol-1-yl)-5-(trifluoromethyl)phenyl)-14-oxo-5-oxa-13-aza-1(3,6)-imidazo[1,2-b]pyridazina-4(1,3)-benzenacyclotetradecaphan-2-yne-4^5-carboxamide, High affinity nerve growth factor receptor
Authors:Zhang, Z.M, Wang, Y.J.
Deposit date:2023-04-24
Release date:2023-09-20
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (3.05065274 Å)
Cite:Structure-Based Optimization of the Third Generation Type II Macrocycle TRK Inhibitors with Improved Activity against Solvent-Front, xDFG, and Gatekeeper Mutations.
J.Med.Chem., 66, 2023
8J5X
DownloadVisualize
BU of 8j5x by Molmil
The crystal structure of TrkA(G595R) kinase in complex with N-(3-cyclopropyl-5-((4-methylpiperazin-1-yl)methyl)phenyl)-4^6-methyl-14-oxo-5-oxa-13-aza-1(3,6)-imidazo[1,2-b]pyridazina-4(1,3)-benzenacyclotetradecaphan-2-yne-4^5-carboxamide
Descriptor: High affinity nerve growth factor receptor, N-(3-cyclopropyl-5-((4-methylpiperazin-1-yl)methyl)phenyl)-4^6-methyl-14-oxo-5-oxa-13-aza-1(3,6)-imidazo[1,2-b]pyridazina-4(1,3)-benzenacyclotetradecaphan-2-yne-4^5-carboxamide
Authors:Zhang, Z.M, Wang, Y.J.
Deposit date:2023-04-24
Release date:2023-09-20
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.09192252 Å)
Cite:Structure-Based Optimization of the Third Generation Type II Macrocycle TRK Inhibitors with Improved Activity against Solvent-Front, xDFG, and Gatekeeper Mutations.
J.Med.Chem., 66, 2023
8J5W
DownloadVisualize
BU of 8j5w by Molmil
The crystal structure of TrkA(F589L) kinase in complex with N-(3-cyclopropyl-5-((4-methylpiperazin-1-yl)methyl)phenyl)-4^6-methyl-14-oxo-5-oxa-13-aza-1(3,6)-imidazo[1,2-b]pyridazina-4(1,3)-benzenacyclotetradecaphan-2-yne-4^5-carboxamide
Descriptor: High affinity nerve growth factor receptor, N-(3-cyclopropyl-5-((4-methylpiperazin-1-yl)methyl)phenyl)-4^6-methyl-14-oxo-5-oxa-13-aza-1(3,6)-imidazo[1,2-b]pyridazina-4(1,3)-benzenacyclotetradecaphan-2-yne-4^5-carboxamide
Authors:Zhang, Z.M, Wang, Y.J.
Deposit date:2023-04-24
Release date:2023-09-20
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.28041458 Å)
Cite:Structure-Based Optimization of the Third Generation Type II Macrocycle TRK Inhibitors with Improved Activity against Solvent-Front, xDFG, and Gatekeeper Mutations.
J.Med.Chem., 66, 2023
8J5U
DownloadVisualize
BU of 8j5u by Molmil
Crystal structure of Mycobacterium tuberculosis OppA complexed with an endogenous oligopeptide
Descriptor: Endogenous oligopeptide, Uncharacterized protein Rv1280c
Authors:Yang, X, Hu, T, Zhang, B, Rao, Z.
Deposit date:2023-04-24
Release date:2024-04-03
Last modified:2024-04-10
Method:X-RAY DIFFRACTION (1.98 Å)
Cite:An oligopeptide permease, OppABCD, requires an iron-sulfur cluster domain for functionality.
Nat.Struct.Mol.Biol., 2024
8J5T
DownloadVisualize
BU of 8j5t by Molmil
Cryo-EM structure of Mycobacterium tuberculosis OppABCD in the catalytic intermediate state
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, IRON/SULFUR CLUSTER, MAGNESIUM ION, ...
Authors:Yang, X, Hu, T, Zhang, B, Rao, Z.
Deposit date:2023-04-24
Release date:2024-04-03
Last modified:2024-04-10
Method:ELECTRON MICROSCOPY (2.98 Å)
Cite:An oligopeptide permease, OppABCD, requires an iron-sulfur cluster domain for functionality.
Nat.Struct.Mol.Biol., 2024
8J5S
DownloadVisualize
BU of 8j5s by Molmil
Cryo-EM structure of Mycobacterium tuberculosis OppABCD in the pre-catalytic intermediate state
Descriptor: Endogenous oligopeptide, IRON/SULFUR CLUSTER, MAGNESIUM ION, ...
Authors:Yang, X, Hu, T, Zhang, B, Rao, Z.
Deposit date:2023-04-24
Release date:2024-04-03
Last modified:2024-04-10
Method:ELECTRON MICROSCOPY (3 Å)
Cite:An oligopeptide permease, OppABCD, requires an iron-sulfur cluster domain for functionality.
Nat.Struct.Mol.Biol., 2024
8J5R
DownloadVisualize
BU of 8j5r by Molmil
Cryo-EM structure of Mycobacterium tuberculosis OppABCD in the resting state
Descriptor: IRON/SULFUR CLUSTER, Putative peptide transport permease protein Rv1282c, Putative peptide transport permease protein Rv1283c, ...
Authors:Yang, X, Hu, T, Zhang, B, Rao, Z.
Deposit date:2023-04-24
Release date:2024-04-03
Last modified:2024-04-10
Method:ELECTRON MICROSCOPY (3.28 Å)
Cite:An oligopeptide permease, OppABCD, requires an iron-sulfur cluster domain for functionality.
Nat.Struct.Mol.Biol., 2024
8J5Q
DownloadVisualize
BU of 8j5q by Molmil
Cryo-EM structure of Mycobacterium tuberculosis OppABCD in the pre-translocation state
Descriptor: Endogenous oligopeptide, IRON/SULFUR CLUSTER, Putative peptide transport permease protein Rv1282c, ...
Authors:Yang, X, Hu, T, Zhang, B, Rao, Z.
Deposit date:2023-04-24
Release date:2024-04-03
Last modified:2024-04-10
Method:ELECTRON MICROSCOPY (3.25 Å)
Cite:An oligopeptide permease, OppABCD, requires an iron-sulfur cluster domain for functionality.
Nat.Struct.Mol.Biol., 2024
8J5L
DownloadVisualize
BU of 8j5l by Molmil
Structure of GH1 Br2 beta-glucosidase E163Q mutant from bovine rumen metagenome
Descriptor: Beta-glucosidase, GLYCEROL, SULFATE ION
Authors:Kaenying, W, Kongsaeree, P.T, Tagami, T.
Deposit date:2023-04-23
Release date:2023-11-22
Last modified:2024-01-03
Method:X-RAY DIFFRACTION (2.095 Å)
Cite:Structural and mutational analysis of glycoside hydrolase family 1 Br2 beta-glucosidase derived from bovine rumen metagenome.
Heliyon, 9, 2023
8J5H
DownloadVisualize
BU of 8j5h by Molmil
Crystal structure of kinase AbmG in complex with 4'-hydroxy-4'-thiocytidine
Descriptor: 4-azanyl-1-[(2~{R},3~{R},4~{S},5~{S})-5-(hydroxymethyl)-3,4,5-tris(oxidanyl)thiolan-2-yl]pyrimidin-2-one, Deoxyadenosine/deoxycytidine kinase, NITRATE ION
Authors:Ushimaru, R, Mori, T, Liu, H.-w, Abe, I.
Deposit date:2023-04-22
Release date:2024-04-24
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Crystal structure of kinase AbmG in complex with 4'-hydroxy-4'-thiocytidine
To Be Published
8J5G
DownloadVisualize
BU of 8j5g by Molmil
Crystal structure of kinase AbmG in complex with 4'-hydroxy-4'-thiocytidine 5'-diphosphate
Descriptor: Deoxyadenosine/deoxycytidine kinase, [(2~{S},3~{S},4~{R},5~{R})-5-(4-azanyl-2-oxidanylidene-pyrimidin-1-yl)-2-(hydroxymethyl)-3,4-bis(oxidanyl)thiolan-2-yl] phosphono hydrogen phosphate
Authors:Ushimaru, R, Mori, T, Liu, H.-w, Abe, I.
Deposit date:2023-04-22
Release date:2024-04-24
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Crystal structure of kinase AbmG in complex with 4'-hydroxy-4'-thiocytidine 5'-diphosphate
To Be Published

222415

PDB entries from 2024-07-10

PDB statisticsPDBj update infoContact PDBjnumon