PDB: 47120 resultsInfo pagesStatus searchChemie searchBIRD

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7DVH	Crystal structure of the computationally designed reDPBB_sym4 protein Descriptor: reDPBB_sym4 protein Authors: Yagi, S, Tagami, S, Padhi, A.K, Zhang, K.Y.J. Deposit date: 2021-01-13 Release date: 2021-09-29 Last modified: 2023-11-29 Method: X-RAY DIFFRACTION (1.698 Å) Cite: Seven Amino Acid Types Suffice to Create the Core Fold of RNA Polymerase. J.Am.Chem.Soc., 143, 2021
2Z9V	Crystal structure of pyridoxamine-pyruvate aminotransferase complexed with pyridoxamine Descriptor: 4-(AMINOMETHYL)-5-(HYDROXYMETHYL)-2-METHYLPYRIDIN-3-OL, Aspartate aminotransferase, GLYCEROL, ... Authors: Yoshikane, Y, Yokochi, N, Yamasaki, M, Mizutani, K, Ohnishi, K, Mikami, B, Hayashi, H, Yagi, T. Deposit date: 2007-09-26 Release date: 2007-11-06 Last modified: 2023-11-01 Method: X-RAY DIFFRACTION (1.7 Å) Cite: Crystal structure of pyridoxamine-pyruvate aminotransferase from Mesorhizobium loti MAFF303099 J.Biol.Chem., 283, 2008
7EK8	Crystal structure of apo streptavidin at ambient temperature Descriptor: Streptavidin Authors: DeMirci, H, Ertem, F.B, Destan, E, Ayan, E. Deposit date: 2021-04-04 Release date: 2021-09-29 Last modified: 2024-05-29 Method: X-RAY DIFFRACTION (1.7 Å) Cite: Crystal structure of apo streptavidin at ambient temperature To Be Published
7Q2P	Beta-lactoglobulin mutant FAW (I56F/L39A/M107W) in complex with desipramine (FAW-DSM#2) Descriptor: 1,2-ETHANEDIOL, 3-(10,11-DIHYDRO-5H-DIBENZO[B,F]AZEPIN-5-YL)-N-METHYLPROPAN-1-AMINE, Beta-lactoglobulin, ... Authors: Loch, J.I, Barciszewski, J, Pokrywka, K, Lewinski, K. Deposit date: 2021-10-25 Release date: 2022-05-11 Last modified: 2024-01-31 Method: X-RAY DIFFRACTION (1.69 Å) Cite: New ligand-binding sites identified in the crystal structures of [beta]-lactoglobulin complexes with desipramine Iucrj, 9, 2022
7DVC	Crystal structure of the computationally designed reDPBB_sym1 protein Descriptor: ACETATE ION, CHLORIDE ION, reDPBB_sym1 protein Authors: Yagi, S, Tagami, S, Padhi, A.K, Zhang, K.Y.J. Deposit date: 2021-01-13 Release date: 2021-09-29 Last modified: 2024-04-03 Method: X-RAY DIFFRACTION (1.705 Å) Cite: Seven Amino Acid Types Suffice to Create the Core Fold of RNA Polymerase. J.Am.Chem.Soc., 143, 2021
7AER	Rebuilt and re-refined PDB entry 5yep: tri-AMPylated Shewanella oneidensis HEPN toxin in complex with MNT antitoxin Descriptor: ADENOSINE MONOPHOSPHATE, Toxin-antitoxin system antidote Mnt family, Toxin-antitoxin system toxin HepN family Authors: Tamulaitiene, G, Sasnauskas, G, Songailiene, I, Juozapaitis, J, Siksnys, V. Deposit date: 2020-09-18 Release date: 2020-12-30 Method: X-RAY DIFFRACTION (3 Å) Cite: HEPN-MNT Toxin-Antitoxin System: The HEPN Ribonuclease Is Neutralized by OligoAMPylation. Mol.Cell, 80, 2020
7DWW	Crystal structure of the computationally designed msDPBB_sym2 protein Descriptor: msDPBB_sym2 protein Authors: Yagi, S, Schiex, T, Vucinic, J, Barbe, S, Simoncini, D, Tagami, S. Deposit date: 2021-01-18 Release date: 2021-09-29 Last modified: 2023-11-29 Method: X-RAY DIFFRACTION (1.802 Å) Cite: Seven Amino Acid Types Suffice to Create the Core Fold of RNA Polymerase. J.Am.Chem.Soc., 143, 2021
7PPC	Ternary signalling complex of BMP10 bound to ALK1 and BMPRII Descriptor: Bone morphogenetic protein 10, Bone morphogenetic protein receptor type-2, Serine/threonine-protein kinase receptor R3 Authors: Guo, J, Yu, M, Read, R.J, Li, W. Deposit date: 2021-09-13 Release date: 2022-05-11 Last modified: 2024-01-31 Method: X-RAY DIFFRACTION (3.6 Å) Cite: Crystal structures of BMPRII extracellular domain in binary and ternary receptor complexes with BMP10. Nat Commun, 13, 2022
8P1G	Crystal structure of inactive TtCE16 in complex with acetate Descriptor: 1,2-ETHANEDIOL, 2-[3-(2-HYDROXY-1,1-DIHYDROXYMETHYL-ETHYLAMINO)-PROPYLAMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, 2-acetamido-2-deoxy-beta-D-glucopyranose, ... Authors: Dimarogona, M, Kosinas, C, Pentari, C, Zerva, A, Topakas, E, Karampa, P. Deposit date: 2023-05-12 Release date: 2024-03-20 Method: X-RAY DIFFRACTION (1.42 Å) Cite: The role of CE16 exo-deacetylases in hemicellulolytic enzyme mixtures revealed by the biochemical and structural study of the novel TtCE16B esterase. Carbohydr Polym, 327, 2024
7DXW	Crystal structure of the mk2h_deltaMIL peptide homodimer Descriptor: SULFATE ION, mk2h_deltaMIL protein Authors: Yagi, S, Tagami, S. Deposit date: 2021-01-20 Release date: 2021-09-29 Last modified: 2023-11-29 Method: X-RAY DIFFRACTION (1.509 Å) Cite: Seven Amino Acid Types Suffice to Create the Core Fold of RNA Polymerase. J.Am.Chem.Soc., 143, 2021
2LXC	Solution structure of the complex between the Sgt2 homodimerization domain and the Get5 UBL domain Descriptor: Small glutamine-rich tetratricopeptide repeat-containing protein 2, Ubiquitin-like protein MDY2 Authors: Chartron, J.W, Vandervelde, D.G, Clemons Jr, W.M. Deposit date: 2012-08-19 Release date: 2012-11-21 Last modified: 2024-05-15 Method: SOLUTION NMR Cite: Structures of the Sgt2/SGTA Dimerization Domain with the Get5/UBL4A UBL Domain Reveal an Interaction that Forms a Conserved Dynamic Interface. Cell Rep, 2, 2012
7AGO	crystal structure of the N-acetylmuramyl-L-alanine amidase, Ami1, from Mycobacterium abscessus bound to L-Alanine-D-isoglutamine Descriptor: ALANINE, D-alpha-glutamine, N-acetylmuramoyl-L-alanine amidase, ... Authors: Blaise, M. Deposit date: 2020-09-23 Release date: 2020-11-18 Last modified: 2024-01-31 Method: X-RAY DIFFRACTION (1.7 Å) Cite: Functional Characterization of the N -Acetylmuramyl-l-Alanine Amidase, Ami1, from Mycobacterium abscessus . Cells, 9, 2020
2MKB	Structure of NS2(113-137) GBVB protein Descriptor: Protease NS2-3 Authors: Montserret, R, Martin, A, Penin, F. Deposit date: 2014-02-04 Release date: 2014-05-07 Last modified: 2024-05-15 Method: SOLUTION NMR Cite: NS2 Proteins of GB Virus B and Hepatitis C Virus Share Common Protease Activities and Membrane Topologies. J.Virol., 88, 2014
7EG4	Cryo-EM structure of nauclefine-induced PDE3A-SLFN12 complex Descriptor: MAGNESIUM ION, Parvine, Schlafen family member 12, ... Authors: Liu, N, Chen, J, Wang, X.D, Wang, H.W. Deposit date: 2021-03-24 Release date: 2021-09-29 Last modified: 2022-05-25 Method: ELECTRON MICROSCOPY (3.2 Å) Cite: Structure of PDE3A-SLFN12 complex and structure-based design for a potent apoptosis inducer of tumor cells. Nat Commun, 12, 2021
7PGZ	Structure of dark-adapted AsLOV2 Q513L Descriptor: 1,2-ETHANEDIOL, FLAVIN MONONUCLEOTIDE, GLYCEROL, ... Authors: Gelfert, R, Weyand, M, Moeglich, A. Deposit date: 2021-08-16 Release date: 2022-05-11 Last modified: 2024-01-31 Method: X-RAY DIFFRACTION (0.9 Å) Cite: Signal transduction in light-oxygen-voltage receptors lacking the active-site glutamine. Nat Commun, 13, 2022
3HLX	Crystal Structure of PqqC Active Site Mutant Y175F in Complex with PQQ Descriptor: CHLORIDE ION, GLYCEROL, PYRROLOQUINOLINE QUINONE, ... Authors: Puehringer, S, Schwarzenbacher, R. Deposit date: 2009-05-28 Release date: 2010-05-12 Last modified: 2023-11-01 Method: X-RAY DIFFRACTION (1.3 Å) Cite: Structural studies of mutant forms of the PQQ-forming enzyme PqqC in the presence of product and substrate Proteins, 78, 2010
7AXC	Crystal structure of the hPXR-LBD in complex with ferutinine Descriptor: GLYCEROL, ISOPROPYL ALCOHOL, Nuclear receptor subfamily 1 group I member 2, ... Authors: Granell, M, Delfosse, V, Bourguet, W. Deposit date: 2020-11-09 Release date: 2021-01-13 Last modified: 2024-01-31 Method: X-RAY DIFFRACTION (2.05 Å) Cite: Mechanistic insights into the synergistic activation of the RXR-PXR heterodimer by endocrine disruptor mixtures. Proc.Natl.Acad.Sci.USA, 118, 2021
7AXJ	Crystal structure of the hPXR-LBD in complex with estradiol and clotrimazole Descriptor: 1-[(2-CHLOROPHENYL)(DIPHENYL)METHYL]-1H-IMIDAZOLE, ESTRADIOL, Nuclear receptor subfamily 1 group I member 2 Authors: Delfosse, V, Granell, M, Blanc, P, Bourguet, W. Deposit date: 2020-11-09 Release date: 2021-01-13 Last modified: 2024-01-31 Method: X-RAY DIFFRACTION (2.3 Å) Cite: Mechanistic insights into the synergistic activation of the RXR-PXR heterodimer by endocrine disruptor mixtures. Proc.Natl.Acad.Sci.USA, 118, 2021
7PH0	Structure of light-adapted AsLOV2 Q513L Descriptor: 1,2-ETHANEDIOL, ACETATE ION, CHLORIDE ION, ... Authors: Gelfert, R, Weyand, M, Moeglich, A. Deposit date: 2021-08-16 Release date: 2022-05-11 Last modified: 2024-01-31 Method: X-RAY DIFFRACTION (0.979 Å) Cite: Signal transduction in light-oxygen-voltage receptors lacking the active-site glutamine. Nat Commun, 13, 2022
7DVS	Crystal structure of Apo (heme-free) PefR Descriptor: MarR family transcriptional regulator Authors: Muraki, N, Aono, S. Deposit date: 2021-01-15 Release date: 2021-09-29 Last modified: 2023-11-29 Method: X-RAY DIFFRACTION (2.6 Å) Cite: Heme controls the structural rearrangement of its sensor protein mediating the hemolytic bacterial survival. Commun Biol, 4, 2021
2M3X	Solution structure of Ph1500: a homohexameric protein centered on a 12-bladed beta-propeller Descriptor: PH1500 Authors: Varnay, I, Truffault, V, Kessler, H, Coles, M. Deposit date: 2013-01-28 Release date: 2014-01-29 Last modified: 2024-05-01 Method: SOLUTION NMR Cite: Solution structure of Ph1500: a homohexameric protein centered on a 12-bladed beta-propeller To be Published
5KN5	TGFalpha/Epiregulin complex with neutralizing antibody LY3016859 Descriptor: Epiregulin Antibody LY3016859 Fab Heavy Chain, Epiregulin Antibody LY3016859 Fab Light Chain, Protransforming growth factor alpha, ... Authors: Atwell, S, Boyles, J.S, Clawson, D.K, Druzina, Z, Josef, G.H, Weichert, K, Witcher, D.R. Deposit date: 2016-06-27 Release date: 2016-08-31 Last modified: 2016-11-02 Method: X-RAY DIFFRACTION (2.8 Å) Cite: Structural basis of selectivity and neutralizing activity of a TGF alpha /epiregulin specific antibody. Protein Sci., 25, 2016
7Q17	Beta-lactoglobulin mutant FAW (I56F/L39A/M107W), unliganded form Descriptor: 1,2-ETHANEDIOL, Beta-lactoglobulin Authors: Loch, J.I, Barciszewski, J, Lewinski, K. Deposit date: 2021-10-18 Release date: 2022-05-11 Last modified: 2024-01-31 Method: X-RAY DIFFRACTION (1.8 Å) Cite: New ligand-binding sites identified in the crystal structures of [beta]-lactoglobulin complexes with desipramine Iucrj, 9, 2022
2MKL	Solution structure of the fourth constant immunoglobulin domain of nurse shark IgNAR Descriptor: Novel antigen receptor Authors: Hennig, J, Sattler, M. Deposit date: 2014-02-10 Release date: 2014-07-02 Last modified: 2023-06-14 Method: SOLUTION NMR Cite: The structural analysis of shark IgNAR antibodies reveals evolutionary principles of immunoglobulins. Proc.Natl.Acad.Sci.USA, 111, 2014
7DYC	Crystal structure of the chemically synthesized mk2h_deltaMILPYS peptide homodimer in complex with malate Descriptor: (2S)-2-hydroxybutanedioic acid, D-MALATE, mk2h_deltaMILPYS protein Authors: Yagi, S, Tagami, S. Deposit date: 2021-01-21 Release date: 2021-09-29 Last modified: 2023-11-29 Method: X-RAY DIFFRACTION (2.3 Å) Cite: Seven Amino Acid Types Suffice to Create the Core Fold of RNA Polymerase. J.Am.Chem.Soc., 143, 2021

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