PDB: 4068 resultsInfo pagesStatus searchChemie searchBIRD

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7NGL	R-state of wild type human mitochondrial LONP1 protease bound to endogenous ADP Descriptor: ADENOSINE-5'-DIPHOSPHATE, Lon protease homolog, mitochondrial Authors: Mohammed, I, Schmitz, K.A, Schenck, N, Maier, T, Abrahams, J.P. Deposit date: 2021-02-09 Release date: 2021-04-28 Last modified: 2024-07-10 Method: ELECTRON MICROSCOPY (3.8 Å) Cite: Catalytic cycling of human mitochondrial Lon protease. Structure, 30, 2022
1DE7	INTERACTION OF FACTOR XIII ACTIVATION PEPTIDE WITH ALPHA-THROMBIN: CRYSTAL STRUCTURE OF THE ENZYME-SUBSTRATE COMPLEX Descriptor: ALPHA-THROMBIN (HEAVY CHAIN), ALPHA-THROMBIN (LIGHT CHAIN), FACTOR XIII ACTIVATION PEPTIDE (28-37), ... Authors: Sadasivan, C, Yee, V.C. Deposit date: 1999-11-13 Release date: 2000-12-13 Last modified: 2023-08-09 Method: X-RAY DIFFRACTION (2 Å) Cite: Interaction of the factor XIII activation peptide with alpha -thrombin. Crystal structure of its enzyme-substrate analog complex. J.Biol.Chem., 275, 2000
3L4H	Helical box domain and second WW domain of the human E3 ubiquitin-protein ligase HECW1 Descriptor: ACETIC ACID, E3 ubiquitin-protein ligase HECW1 Authors: Walker, J.R, Qiu, L, Li, Y, Weigelt, J, Bountra, C, Arrowsmith, C.H, Edwards, A.M, Botchkarev, A, Dhe-Paganon, S, Structural Genomics Consortium (SGC) Deposit date: 2009-12-20 Release date: 2010-05-05 Last modified: 2011-07-13 Method: X-RAY DIFFRACTION (1.8 Å) Cite: The tandem helical box and second WW domains of human HECW1 To be Published
4GPG	X/N joint refinement of Achromobacter Lyticus Protease I free form at pD8.0 Descriptor: Protease 1 Authors: Ohnishi, Y, Yamada, T, Kurihara, K, Tanaka, I, Sakiyama, F, Masaki, T, Niimura, N. Deposit date: 2012-08-21 Release date: 2013-09-11 Last modified: 2023-11-08 Method: NEUTRON DIFFRACTION (1.895 Å), X-RAY DIFFRACTION Cite: Neutron and X-ray crystallographic analysis of Achromobacter protease I at pD 8.0: protonation states and hydration structure in the free-form. Biochim.Biophys.Acta, 1834, 2013
4HSS	Structure of the Full-Length Major Pilin SpaD from Corynebacterium diphtheriae Descriptor: CALCIUM ION, Putative fimbrial subunit Authors: Paterson, N.G, Kang, H.J, Baker, E.N. Deposit date: 2012-10-30 Release date: 2013-11-13 Last modified: 2023-09-20 Method: X-RAY DIFFRACTION (2.5 Å) Cite: A slow-forming isopeptide bond in the structure of the major pilin SpaD from Corynebacterium diphtheriae has implications for pilus assembly. Acta Crystallogr.,Sect.D, 70, 2014
1ZJK	Crystal structure of the zymogen catalytic region of human MASP-2 Descriptor: Mannan-binding lectin serine protease 2 Authors: Gal, P, Harmat, V, Kocsis, A, Bian, T, Barna, L, Ambrus, G, Vegh, B, Balczer, J, Sim, R.B, Naray-Szabo, G, Zavodszky, P. Deposit date: 2005-04-29 Release date: 2005-07-26 Last modified: 2023-08-23 Method: X-RAY DIFFRACTION (2.18 Å) Cite: A True Autoactivating Enzyme: Structural insight into mannose-binding lectin-associated serine protease-2 activations J.Biol.Chem., 280, 2005
2B4I	Crystal Structure of the Rhesus Rotavirus VP5 Antigen Domain Trimer Descriptor: Outer capsid protein VP4 Authors: Yoder, J.D, Dormitzer, P.R. Deposit date: 2005-09-24 Release date: 2006-04-18 Last modified: 2023-08-23 Method: X-RAY DIFFRACTION (2 Å) Cite: Alternative intermolecular contacts underlie the rotavirus VP5(*) two- to three-fold rearrangement Embo J., 25, 2006
2B5T	2.1 Angstrom structure of a nonproductive complex between antithrombin, synthetic heparin mimetic SR123781 and two S195A thrombin molecules Descriptor: 2,3,4,6-tetra-O-sulfonato-alpha-D-glucopyranose-(1-4)-2,3,6-tri-O-sulfo-alpha-D-glucopyranose-(1-4)-2,3,6-tri-O-sulfonato-beta-D-glucopyranose-(1-4)-2,3-di-O-methyl-6-O-sulfonato-alpha-D-glucopyranose-(1-4)-2,3,6-tri-O-methyl-beta-D-glucopyranose-(1-4)-2,3,6-tri-O-methyl-alpha-D-glucopyranose-(1-4)-2,3,6-tri-O-methyl-beta-D-glucopyranose-(1-4)-2,3,6-tri-O-methyl-alpha-D-glucopyranose-(1-4)-2,3,6-tri-O-methyl-beta-D-glucopyranose-(1-4)-2,3,6-tri-O-methyl-alpha-D-glucopyranose-(1-4)-2,3,6-tri-O-methyl-beta-D-glucopyranose-(1-4)-2,3-di-O-methyl-6-O-sulfonato-alpha-D-glucopyranose-(1-4)-2,3-di-O-methyl-beta-D-glucopyranuronic acid-(1-4)-2,3,6-tri-O-sulfo-alpha-D-glucopyranose-(1-4)-2,3-di-O-methyl-alpha-L-idopyranuronic acid-(1-4)-methyl 3-O-methyl-2,6-di-O-sulfo-alpha-D-glucopyranoside, 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ... Authors: Johnson, D.J, Li, W, Luis, S.A, Carrell, R.W, Huntington, J.A. Deposit date: 2005-09-29 Release date: 2006-09-19 Last modified: 2023-08-23 Method: X-RAY DIFFRACTION (2.1 Å) Cite: Crystal structure of monomeric native antithrombin reveals a novel reactive center loop conformation. J.Biol.Chem., 281, 2006
2AIQ	Crystal structure of benzamidine-inhibited protein C activator from the venom of copperhead snake Agkistrodon contortrix contortrix Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, ACETATE ION, BENZAMIDINE, ... Authors: Murakami, M.T, Arni, R.K. Deposit date: 2005-07-30 Release date: 2005-09-06 Last modified: 2023-08-23 Method: X-RAY DIFFRACTION (1.54 Å) Cite: Thrombomodulin-independent Activation of Protein C and Specificity of Hemostatically Active Snake Venom Serine Proteinases: CRYSTAL STRUCTURES OF NATIVE AND INHIBITED AGKISTRODON CONTORTRIX CONTORTRIX PROTEIN C ACTIVATOR. J.Biol.Chem., 280, 2005
2B4H	Crystal Structure of the Rhesus Rotavirus VP5 Antigen Domain Dimer Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, Outer capsid protein VP4 Authors: Yoder, J.D, Dormitzer, P.R. Deposit date: 2005-09-24 Release date: 2006-04-18 Last modified: 2023-08-23 Method: X-RAY DIFFRACTION (1.6 Å) Cite: Alternative intermolecular contacts underlie the rotavirus VP5(*) two- to three-fold rearrangement Embo J., 25, 2006
6U7Q	NMR solution structure of SFTI-R10 Descriptor: GLY-ARG-CYS-THR-LYS-SER-ILE-PRO-PRO-ARG-CYS-PHE-PRO-ASP inhibitor Authors: White, A.M, Harvey, P.J, Durek, T, Craik, D.J. Deposit date: 2019-09-03 Release date: 2020-04-22 Last modified: 2023-06-14 Method: SOLUTION NMR Cite: Application and Structural Analysis of Triazole-Bridged Disulfide Mimetics in Cyclic Peptides. Angew.Chem.Int.Ed.Engl., 59, 2020
6U24	NMR solution structure of triazole bridged SFTI-1 Descriptor: 1-methyl-1H-1,2,3-triazole, GLY-ARG-ALA-THR-LYS-SER-ILE-PRO-PRO-ILE-ALA-PHE-PRO-ASP Authors: White, A.M, Harvey, P.J, Durek, T, Craik, D.J. Deposit date: 2019-08-19 Release date: 2020-07-01 Last modified: 2020-07-15 Method: SOLUTION NMR Cite: Application and Structural Analysis of Triazole-Bridged Disulfide Mimetics in Cyclic Peptides. Angew.Chem.Int.Ed.Engl., 59, 2020
6U7U	NMR solution structure of triazole bridged matriptase inhibitor Descriptor: 1-methyl-1H-1,2,3-triazole, GLY-ARG-ALA-THR-LYS-SER-ILE-PRO-PRO-ARG-ALA-PHE-PRO-ASP Authors: White, A.M, Harvey, P.J, Durek, T, Craik, D.J. Deposit date: 2019-09-03 Release date: 2020-04-22 Last modified: 2020-07-15 Method: SOLUTION NMR Cite: Application and Structural Analysis of Triazole-Bridged Disulfide Mimetics in Cyclic Peptides. Angew.Chem.Int.Ed.Engl., 59, 2020
6U7S	NMR solution structure of SFTI-1 based plasmin inhibitor Descriptor: GLY-ARG-CYS-TYR-LYS-SER-LYS-PRO-PRO-ILE-CYS-PHE-PRO-ASP inhibitor Authors: White, A.M, Harvey, P.J, Durek, T, Craik, D.J. Deposit date: 2019-09-03 Release date: 2020-04-22 Last modified: 2023-06-14 Method: SOLUTION NMR Cite: Application and Structural Analysis of Triazole-Bridged Disulfide Mimetics in Cyclic Peptides. Angew.Chem.Int.Ed.Engl., 59, 2020
6U2J	EM structure of MPEG-1 (L425K, alpha conformation) soluble pre-pore complex Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Macrophage-expressed gene 1 protein Authors: Pang, S.S, Bayly-Jones, C. Deposit date: 2019-08-20 Release date: 2019-09-25 Last modified: 2020-07-29 Method: ELECTRON MICROSCOPY (2.37 Å) Cite: The cryo-EM structure of the acid activatable pore-forming immune effector Macrophage-expressed gene 1. Nat Commun, 10, 2019
1QQ4	CRYSTAL STRUCTURE OF AN ALPHA-LYTIC PROTEASE MUTANT WITH ACCELERATED FOLDING KINETICS, R102H/G134S Descriptor: ALPHA-LYTIC PROTEASE, GLYCEROL, SULFATE ION Authors: Derman, A.I, Mau, T, Agard, D.A. Deposit date: 1999-06-10 Release date: 1999-06-15 Last modified: 2021-11-03 Method: X-RAY DIFFRACTION (1.2 Å) Cite: A Genetic Screen That Targets Specifically the Folding Transition State of Alpha-Lytic Protease To be Published, 1999
6U7W	NMR solution structure of a triazole bridged KLK7 inhibitor Descriptor: 1-methyl-1H-1,2,3-triazole, GLY-LYS-ALA-LEU-PHE-SER-ASN-PRO-PRO-ILE-ALA-PHE-PRO-ASN Authors: White, A.M, Harvey, P.J, Durek, T, Craik, D.J. Deposit date: 2019-09-03 Release date: 2020-04-22 Last modified: 2020-07-15 Method: SOLUTION NMR Cite: Application and Structural Analysis of Triazole-Bridged Disulfide Mimetics in Cyclic Peptides. Angew.Chem.Int.Ed.Engl., 59, 2020
6U2W	EM structure of MPEG-1(L425K) pre-pore complex bound to liposome Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Macrophage-expressed gene 1 protein Authors: Pang, S.S, Bayly-Jones, C. Deposit date: 2019-08-20 Release date: 2019-09-25 Last modified: 2020-07-29 Method: ELECTRON MICROSCOPY (3.63 Å) Cite: The cryo-EM structure of the acid activatable pore-forming immune effector Macrophage-expressed gene 1. Nat Commun, 10, 2019
1QGF	PORCINE PANCREATIC ELASTASE COMPLEXED WITH (3R, 4S)N-PARA-TOLUENESULPHONYL-3-ETHYL-4-(CARBOXYLIC ACID)PYRROLIDIN-2-ONE Descriptor: (2S,3S)-3-FORMYL-2-({[(4-METHYLPHENYL)SULFONYL]AMINO}METHYL)PENTANOIC ACID, CALCIUM ION, ELASTASE, ... Authors: Wilmouth, R.C, Kassamally, S, Westwood, N.J, Sheppard, R.J, Claridge, T.D.W, Wright, P.A, Pritchard, G.J, Schofield, C.J. Deposit date: 1999-04-27 Release date: 1999-12-29 Last modified: 2023-08-16 Method: X-RAY DIFFRACTION (1.7 Å) Cite: Mechanistic insights into the inhibition of serine proteases by monocyclic lactams. Biochemistry, 38, 1999
6UFN	Crystal Structure of Danio rerio Histone Deacetylase 10 in Complex with 7-[(3-aminopropyl)amino]heptan-2-one Descriptor: 7-[(3-aminopropyl)amino]heptane-2,2-diol, PHOSPHATE ION, POTASSIUM ION, ... Authors: Herbst-Gervasoni, C.J, Christianson, D.W. Deposit date: 2019-09-24 Release date: 2019-12-04 Last modified: 2023-10-11 Method: X-RAY DIFFRACTION (2.7 Å) Cite: Binding ofN8-Acetylspermidine Analogues to Histone Deacetylase 10 Reveals Molecular Strategies for Blocking Polyamine Deacetylation. Biochemistry, 58, 2019
8GO6	Fungal immunomodulatory protein FIP-nha N39A Descriptor: fungal immunomodulatory protein FIP-nha N39A Authors: Liu, Y, Bastiaan-Net, S, Hoppenbrouwers, T, Li, Z, Wichers, H.J. Deposit date: 2022-08-24 Release date: 2023-08-30 Last modified: 2023-09-20 Method: X-RAY DIFFRACTION (2.813 Å) Cite: Glycosylation Contributes to Thermostability and Proteolytic Resistance of rFIP-nha ( Nectria haematococca ). Molecules, 28, 2023
8GO7	Fungal immunomodulatory protein FIP-nha N5+39A Descriptor: Fungal immunomodulatory protein FIP-nha Authors: Liu, Y, Bastiaan-Net, S, Hoppenbrouwers, T, Li, Z, Wichers, H.J. Deposit date: 2022-08-24 Release date: 2023-08-30 Last modified: 2023-09-20 Method: X-RAY DIFFRACTION (2.303 Å) Cite: Glycosylation Contributes to Thermostability and Proteolytic Resistance of rFIP-nha ( Nectria haematococca ). Molecules, 28, 2023
6UHV	Crystal Structure of Danio rerio Histone Deacetylase 10 in Complex with 6-[(3-aminopropyl)amino]-N-hydroxyhexanamide Descriptor: 6-[(3-aminopropyl)amino]-N-hydroxyhexanamide, PHOSPHATE ION, POTASSIUM ION, ... Authors: Herbst-Gervasoni, C.J, Christianson, D.W. Deposit date: 2019-09-28 Release date: 2019-12-04 Last modified: 2023-10-11 Method: X-RAY DIFFRACTION (2.53 Å) Cite: Binding ofN8-Acetylspermidine Analogues to Histone Deacetylase 10 Reveals Molecular Strategies for Blocking Polyamine Deacetylation. Biochemistry, 58, 2019
6UII	Crystal Structure of Danio rerio Histone Deacetylase 10 in Complex with 5-[(3-aminopropyl)amino]pentane-1-thiol Descriptor: 5-[(3-aminopropyl)amino]pentane-1-thiol, PHOSPHATE ION, POTASSIUM ION, ... Authors: Herbst-Gervasoni, C.J, Christianson, D.W. Deposit date: 2019-10-01 Release date: 2019-12-04 Last modified: 2023-10-11 Method: X-RAY DIFFRACTION (2.65 Å) Cite: Binding ofN8-Acetylspermidine Analogues to Histone Deacetylase 10 Reveals Molecular Strategies for Blocking Polyamine Deacetylation. Biochemistry, 58, 2019
8GO5	Fungal immunomodulatory protein FIP-nha WT Descriptor: Fungal immunomodulatory proteins Authors: Liu, Y, Bastiaan-Net, S, Hoppenbrouwers, T, Li, Z. Deposit date: 2022-08-24 Release date: 2023-08-30 Last modified: 2023-09-20 Method: X-RAY DIFFRACTION (2.809 Å) Cite: Glycosylation Contributes to Thermostability and Proteolytic Resistance of rFIP-nha ( Nectria haematococca ). Molecules, 28, 2023

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