Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

5ZAJ
DownloadVisualize
BU of 5zaj by Molmil
uPA-31F
Descriptor: 3-azanyl-5-(azepan-1-yl)-N-carbamimidoyl-6-(2,4-dimethoxypyrimidin-5-yl)pyrazine-2-carboxamide, Urokinase-type plasminogen activator chain B
Authors:Buckley, B.J, Jiang, L.G, Huang, M.D, Kelso, M.J, Ranson, M.
Deposit date:2018-02-07
Release date:2018-12-19
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:6-Substituted Hexamethylene Amiloride (HMA) Derivatives as Potent and Selective Inhibitors of the Human Urokinase Plasminogen Activator for Use in Cancer.
J. Med. Chem., 61, 2018
5ZAG
DownloadVisualize
BU of 5zag by Molmil
uPA-BB2-94F
Descriptor: 3-azanyl-5-(azepan-1-yl)-N-carbamimidoyl-6-pyrimidin-5-yl-pyrazine-2-carboxamide, Urokinase-type plasminogen activator chain B
Authors:Buckley, B.J, Jiang, L.G, Huang, M.D, Kelso, M.J, Ranson, M.
Deposit date:2018-02-07
Release date:2018-12-19
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:6-Substituted Hexamethylene Amiloride (HMA) Derivatives as Potent and Selective Inhibitors of the Human Urokinase Plasminogen Activator for Use in Cancer.
J. Med. Chem., 61, 2018
5ZA8
DownloadVisualize
BU of 5za8 by Molmil
uPA-BB2-27F
Descriptor: 3-azanyl-5-(azepan-1-yl)-N-carbamimidoyl-6-(1-methylpyrazol-4-yl)pyrazine-2-carboxamide, Urokinase-type plasminogen activator chain B
Authors:Buckley, B.J, Jiang, L.G, Huang, M.D, Kelso, M.J, Ranson, M.
Deposit date:2018-02-06
Release date:2018-12-19
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:6-Substituted Hexamethylene Amiloride (HMA) Derivatives as Potent and Selective Inhibitors of the Human Urokinase Plasminogen Activator for Use in Cancer.
J. Med. Chem., 61, 2018
5ZAF
DownloadVisualize
BU of 5zaf by Molmil
uPA-BB2-28F
Descriptor: 3-azanyl-5-(azepan-1-yl)-N-carbamimidoyl-6-(furan-3-yl)pyrazine-2-carboxamide, Urokinase-type plasminogen activator chain B
Authors:Buckley, B.J, Jiang, L.G, Huang, M.D, Kelso, M.J, Ranson, M.
Deposit date:2018-02-07
Release date:2018-12-19
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:6-Substituted Hexamethylene Amiloride (HMA) Derivatives as Potent and Selective Inhibitors of the Human Urokinase Plasminogen Activator for Use in Cancer.
J. Med. Chem., 61, 2018
5ZFI
DownloadVisualize
BU of 5zfi by Molmil
Mouse kallikrein 7 in complex with 6-benzyl-1,4-diazepan-7-one derivative
Descriptor: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, 2-[(3Z,6R)-6-[(2,6-dichlorophenyl)methyl]-3-(dimethylhydrazinylidene)-7-oxo-1,4-diazepan-1-yl]-N-[3-(1-methyl-1H-pyrazol-4-yl)phenyl]acetamide, Kallikrein-7
Authors:Sugawara, H.
Deposit date:2018-03-06
Release date:2018-06-27
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structure-based drug design to overcome species differences in kallikrein 7 inhibition of 1,3,6-trisubstituted 1,4-diazepan-7-ones.
Bioorg. Med. Chem., 26, 2018
5ZA7
DownloadVisualize
BU of 5za7 by Molmil
uPA-HMA
Descriptor: 3-azanyl-5-(azepan-1-yl)-N-[bis(azanyl)methylidene]-6-chloranyl-pyrazine-2-carboxamide, SULFATE ION, Urokinase-type plasminogen activator chain B
Authors:Buckley, B.J, Jiang, L.G, Huang, M.D, Kelso, M.J, Ranson, M.
Deposit date:2018-02-06
Release date:2018-12-19
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:6-Substituted Hexamethylene Amiloride (HMA) Derivatives as Potent and Selective Inhibitors of the Human Urokinase Plasminogen Activator for Use in Cancer.
J. Med. Chem., 61, 2018
5ZAE
DownloadVisualize
BU of 5zae by Molmil
uPA-6F-HMA
Descriptor: 3-azanyl-5-(azepan-1-yl)-N-carbamimidoyl-6-(furan-2-yl)pyrazine-2-carboxamide, SULFATE ION, Urokinase-type plasminogen activator chain B
Authors:Buckley, B.J, Jiang, L.G, Huang, M.D, Kelso, M.J, Ranson, M.
Deposit date:2018-02-07
Release date:2018-12-19
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.73 Å)
Cite:6-Substituted Hexamethylene Amiloride (HMA) Derivatives as Potent and Selective Inhibitors of the Human Urokinase Plasminogen Activator for Use in Cancer.
J. Med. Chem., 61, 2018
5ZC5
DownloadVisualize
BU of 5zc5 by Molmil
uPA-NU-09F
Descriptor: 3-azanyl-5-(azepan-1-yl)-N-carbamimidoyl-6-(4-fluoranyl-1-benzofuran-2-yl)pyrazine-2-carboxamide, Urokinase-type plasminogen activator chain B
Authors:Jiang, L.G, Buckley, B.J, Huang, M.D, Kelso, M.J, Ranson, M.
Deposit date:2018-02-15
Release date:2018-12-19
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:6-Substituted Hexamethylene Amiloride (HMA) Derivatives as Potent and Selective Inhibitors of the Human Urokinase Plasminogen Activator for Use in Cancer.
J. Med. Chem., 61, 2018
5Z1C
DownloadVisualize
BU of 5z1c by Molmil
The crystal structure of uPA in complex with 4-Iodobenzylamine at pH7.4
Descriptor: 1-(4-iodophenyl)methanamine, Urokinase-type plasminogen activator
Authors:Jiang, L.G, Zhang, X, Luo, Z.P, Huang, M.D.
Deposit date:2017-12-25
Release date:2018-12-26
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.45 Å)
Cite:Halogen bonding for the design of inhibitors by targeting the S1 pocket of serine proteases
Rsc Adv, 49, 2018
5ZAH
DownloadVisualize
BU of 5zah by Molmil
uPA-BB2-30F
Descriptor: 3-azanyl-5-(azepan-1-yl)-N-carbamimidoyl-6-(2-methoxypyrimidin-5-yl)pyrazine-2-carboxamide, Urokinase-type plasminogen activator chain B
Authors:Buckley, B.J, Jiang, L.G, Huang, M.D, Kelso, M.J, Ranson, M.
Deposit date:2018-02-07
Release date:2018-12-19
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.98 Å)
Cite:6-Substituted Hexamethylene Amiloride (HMA) Derivatives as Potent and Selective Inhibitors of the Human Urokinase Plasminogen Activator for Use in Cancer.
J. Med. Chem., 61, 2018
5ZFH
DownloadVisualize
BU of 5zfh by Molmil
Mouse Kallikrein 7
Descriptor: Kallikrein-7
Authors:Sugawara, H.
Deposit date:2018-03-06
Release date:2018-06-27
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.93 Å)
Cite:Structure-based drug design to overcome species differences in kallikrein 7 inhibition of 1,3,6-trisubstituted 1,4-diazepan-7-ones.
Bioorg. Med. Chem., 26, 2018
5ZA9
DownloadVisualize
BU of 5za9 by Molmil
uPA-BB2-50F
Descriptor: 3-azanyl-5-(azepan-1-yl)-6-(1-benzofuran-2-yl)-Ncarbamimidoyl-pyrazine-2-carboxamide, Urokinase-type plasminogen activator chain B
Authors:Buckley, B.J, Jiang, L.G, Huang, M.D, Kelso, M.J, Ranson, M.
Deposit date:2018-02-07
Release date:2018-12-19
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.62 Å)
Cite:6-Substituted Hexamethylene Amiloride (HMA) Derivatives as Potent and Selective Inhibitors of the Human Urokinase Plasminogen Activator for Use in Cancer.
J. Med. Chem., 61, 2018
6A8G
DownloadVisualize
BU of 6a8g by Molmil
The crystal structure of muPAin-1-IG in complex with muPA-SPD at pH8.5
Descriptor: PHOSPHATE ION, Urokinase-type plasminogen activator chain B, muPAin-1-IG
Authors:Wang, D, Yang, Y.S, Jiang, L.G, Huang, M.D, Li, J.Y, Andreasen, P.A, Xu, P, Chen, Z.
Deposit date:2018-07-08
Release date:2019-02-20
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.53 Å)
Cite:Suppression of Tumor Growth and Metastases by Targeted Intervention in Urokinase Activity with Cyclic Peptides.
J.Med.Chem., 62, 2019
2G5N
DownloadVisualize
BU of 2g5n by Molmil
Indole-amidine Complexes with Bovine Trypsin
Descriptor: 2-(3-METHYLPHENYL)-1H-INDOLE-5-CARBOXIMIDAMIDE, CALCIUM ION, Cationic trypsin, ...
Authors:Kline, A.D, Briggs, S.L, Subramaniam, S.
Deposit date:2006-02-23
Release date:2006-08-29
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.51 Å)
Cite:Ligand Epitoping By Proton NMR Chemical Shift Differences
To be published
2G4T
DownloadVisualize
BU of 2g4t by Molmil
anomalous substructure of porcine pancreatic elastase (Na)
Descriptor: Elastase-1, SODIUM ION, SULFATE ION
Authors:Mueller-Dieckmann, C, Weiss, M.S.
Deposit date:2006-02-22
Release date:2007-02-20
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:On the routine use of soft X-rays in macromolecular crystallography. Part IV. Efficient determination of anomalous substructures in biomacromolecules using longer X-ray wavelengths.
Acta Crystallogr.,Sect.D, 63, 2007
2G4U
DownloadVisualize
BU of 2g4u by Molmil
Anomalous substructure of porcine pancreatic elastaase (Ca)
Descriptor: CALCIUM ION, CITRATE ANION, elastase-1
Authors:Mueller-Dieckmann, C, Weiss, M.S.
Deposit date:2006-02-22
Release date:2007-02-20
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.84 Å)
Cite:On the routine use of soft X-rays in macromolecular crystallography. Part IV. Efficient determination of anomalous substructures in biomacromolecules using longer X-ray wavelengths.
Acta Crystallogr.,Sect.D, 63, 2007
5DJ7
DownloadVisualize
BU of 5dj7 by Molmil
S. erythraea trypsin acyl-enzyme
Descriptor: Trypsin
Authors:Blankenship, E, Lodowski, D.T.
Deposit date:2015-09-01
Release date:2017-03-08
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (0.87 Å)
Cite:High resolution structures of S. erythraeus trypsin throughout the catalytic cycle
To be Published
5DKM
DownloadVisualize
BU of 5dkm by Molmil
S. erythraea trypsin Michaelis-Menten complex
Descriptor: Trypsin
Authors:Blankenship, E, Lodowski, D.T.
Deposit date:2015-09-03
Release date:2017-03-08
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (0.92 Å)
Cite:High resolution structures of S. erythraeus trypsin throughout the catalytic cycle
To be Published
2GCT
DownloadVisualize
BU of 2gct by Molmil
STRUCTURE OF GAMMA-CHYMOTRYPSIN IN THE RANGE PH 2.0 TO PH 10.5 SUGGESTS THAT GAMMA-CHYMOTRYPSIN IS A COVALENT ACYL-ENZYME ADDUCT AT LOW PH
Descriptor: GAMMA-CHYMOTRYPSIN A, SULFATE ION, TETRAPEPTIDE ADDUCT
Authors:Dixon, M.M, Matthews, B.W.
Deposit date:1990-09-04
Release date:1991-10-15
Last modified:2024-06-05
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structure of gamma-chymotrypsin in the range pH 2.0 to pH 10.5 suggests that gamma-chymotrypsin is a covalent acyl-enzyme adduct at low pH.
Int.J.Biol.Macromol., 13, 1991
2GCH
DownloadVisualize
BU of 2gch by Molmil
REFINED CRYSTAL STRUCTURE OF GAMMA-CHYMOTRYPSIN AT 1.9 ANGSTROMS RESOLUTION
Descriptor: GAMMA-CHYMOTRYPSIN A
Authors:Cohen, G.H, Davies, D.R, Silverton, E.W.
Deposit date:1980-05-21
Release date:1980-07-09
Last modified:2024-06-05
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Refined crystal structure of gamma-chymotrypsin at 1.9 A resolution. Comparison with other pancreatic serine proteases.
J.Mol.Biol., 148, 1981
2GV6
DownloadVisualize
BU of 2gv6 by Molmil
Crystal Structure of Matriptase with Inhibitor CJ-730
Descriptor: (S)-3-(3-(4-(2-GUANIDINOETHYL)PIPERIDIN-1-YL)-2-(NAPHTHALENE-2-SULFONAMIDO)-3-OXOPROPYL)BENZIMIDAMIDE, Suppressor of tumorigenicity 14
Authors:Bode, W.
Deposit date:2006-05-02
Release date:2006-06-06
Last modified:2021-06-23
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Secondary Amides of Sulfonylated 3-Amidinophenylalanine. New Potent and Selective Inhibitors of Matriptase.
J.Med.Chem., 49, 2006
2H5D
DownloadVisualize
BU of 2h5d by Molmil
0.9A resolution crystal structure of alpha-lytic protease complexed with a transition state analogue, MeOSuc-Ala-Ala-Pro-Val boronic acid
Descriptor: ALPHA-LYTIC PROTEASE, GLYCEROL, MEOSUC-ALA-ALA-PRO-ALA BORONIC ACID INHIBITOR, ...
Authors:Fuhrmann, C.N, Agard, D.A.
Deposit date:2006-05-25
Release date:2006-09-26
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (0.9 Å)
Cite:Subangstrom crystallography reveals that short ionic hydrogen bonds, and not a His-Asp low-barrier hydrogen bond, stabilize the transition state in serine protease catalysis
J.Am.Chem.Soc., 128, 2006
2H1U
DownloadVisualize
BU of 2h1u by Molmil
Porcine pancreatic elastase complexed with MetPheLeuGlu at pH 5.0
Descriptor: CALCIUM ION, Elastase-1, MFLE, ...
Authors:Liu, B, Schofield, C.J, Wilmouth, R.C.
Deposit date:2006-05-17
Release date:2006-05-30
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Structural analyses on intermediates in serine protease catalysis.
J.Biol.Chem., 281, 2006
5DK1
DownloadVisualize
BU of 5dk1 by Molmil
S. erythraea trypsin mixed catalytic intermediate
Descriptor: Trypsin
Authors:Blankenship, E, Lodowski, D.T.
Deposit date:2015-09-02
Release date:2017-03-08
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (0.938 Å)
Cite:High resolution structures of S. erythraeus trypsin throughout the catalytic cycle
To be Published
2GV7
DownloadVisualize
BU of 2gv7 by Molmil
Structure of Matriptase in Complex with Inhibitor CJ-672
Descriptor: (S)-4-(4-(3-(3-CARBAMIMIDOYLPHENYL)-2-(2,4,6-TRIISOPROPYLPHENYLSULFONAMIDO)PROPANOYL)PIPERAZINE-1-CARBONYL)PIPERIDINE-1-CARBOXIMIDAMIDE, Suppressor of tumorigenicity 14
Authors:Bode, W.
Deposit date:2006-05-02
Release date:2006-06-06
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Secondary Amides of Sulfonylated 3-Amidinophenylalanine. New Potent and Selective Inhibitors of Matriptase.
J.Med.Chem., 49, 2006

220760

PDB entries from 2024-06-05

PDB statisticsPDBj update infoContact PDBjnumon