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PDB: 62 results

8B7G
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BU of 8b7g by Molmil
Structure of oxygen-degraded rsCherry
Descriptor: 1,2-ETHANEDIOL, 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, DI(HYDROXYETHYL)ETHER, ...
Authors:Bui, T.Y.H, Van Meervelt, L.
Deposit date:2022-09-29
Release date:2023-04-05
Last modified:2024-11-13
Method:X-RAY DIFFRACTION (1.3 Å)
Cite:Oxygen-induced chromophore degradation in the photoswitchable red fluorescent protein rsCherry.
Int.J.Biol.Macromol., 239, 2023
2PQ3
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BU of 2pq3 by Molmil
N-Terminal Calmodulin Zn-Trapped Intermediate
Descriptor: CACODYLATE ION, Calmodulin, ZINC ION
Authors:Warren, J.T, Guo, Q, Tang, W.J.
Deposit date:2007-05-01
Release date:2007-10-16
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (1.3 Å)
Cite:A 1.3-A structure of zinc-bound N-terminal domain of calmodulin elucidates potential early ion-binding step.
J.Mol.Biol., 374, 2007
7ZCT
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BU of 7zct by Molmil
Structure of the red fluorescent protein mScarlet3 at pH 7.5
Descriptor: Red fluorescent protein drFP583
Authors:Aumonier, S, Dupuy, J, Royant, A.
Deposit date:2022-03-28
Release date:2023-04-05
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.33 Å)
Cite:mScarlet3: a brilliant and fast-maturing red fluorescent protein.
Nat.Methods, 20, 2023
7OIN
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BU of 7oin by Molmil
Crystal structure of LSSmScarlet - a genetically encoded red fluorescent protein with a large Stokes shift
Descriptor: LSSmScarlet - Genetically Encoded Red Fluorescent Proteins with a Large Stokes Shift, SODIUM ION, SULFATE ION
Authors:Boyko, K.M, Nikolaeva, A.Y, Dorovatovskii, P.V, Subach, O.M, Vlaskina, A.V, Agapova, Y.K, Ivashkina, O.I, Popov, V.O, Subach, F.V.
Deposit date:2021-05-12
Release date:2022-02-16
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:LSSmScarlet, dCyRFP2s, dCyOFP2s and CRISPRed2s, Genetically Encoded Red Fluorescent Proteins with a Large Stokes Shift.
Int J Mol Sci, 22, 2021
1ZGO
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BU of 1zgo by Molmil
High Resolution Crystal Structure of the Discosoma Red Fluorescent Protein (DsRed)
Descriptor: Red fluorescent protein drFP583
Authors:Tubbs, J.L, Tainer, J.A, Getzoff, E.D.
Deposit date:2005-04-21
Release date:2005-08-02
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Crystallographic structures of discosoma red fluorescent protein with immature and mature chromophores: linking Peptide bond trans-cis isomerization and acylimine formation in chromophore maturation.
Biochemistry, 44, 2005
8ARM
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BU of 8arm by Molmil
Crystal structure of LSSmScarlet2
Descriptor: LSSmScarlet2, SULFATE ION
Authors:Samygina, V.R, Subach, O.M, Vlaskina, A.V, Subach, F.V.
Deposit date:2022-08-17
Release date:2022-11-02
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.41 Å)
Cite:LSSmScarlet2 and LSSmScarlet3, Chemically Stable Genetically Encoded Red Fluorescent Proteins with a Large Stokes' Shift.
Int J Mol Sci, 23, 2022
5LK4
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BU of 5lk4 by Molmil
Structure of the Red Fluorescent Protein mScarlet at pH 7.8
Descriptor: DI(HYDROXYETHYL)ETHER, PHOSPHATE ION, TETRAETHYLENE GLYCOL, ...
Authors:Aumonier, S, Gotthard, G, Royant, A.
Deposit date:2016-07-20
Release date:2016-12-07
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.47 Å)
Cite:mScarlet: a bright monomeric red fluorescent protein for cellular imaging.
Nat. Methods, 14, 2017
4J9Y
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BU of 4j9y by Molmil
Calcium-calmodulin complexed with the calmodulin binding domain from a small conductance potassium channel splice variant
Descriptor: CALCIUM ION, Calmodulin, GLYCEROL, ...
Authors:Zhang, M, Pascal, J.M, Zhang, J.-F.
Deposit date:2013-02-17
Release date:2013-03-27
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (1.51 Å)
Cite:Unstructured to structured transition of an intrinsically disordered protein peptide in coupling Ca2+-sensing and SK channel activation.
Proc.Natl.Acad.Sci.USA, 110, 2013
8B65
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BU of 8b65 by Molmil
Structure of rsCherry crystallized in anaerobic conditions
Descriptor: 1,2-ETHANEDIOL, 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, DI(HYDROXYETHYL)ETHER, ...
Authors:Bui, T.Y.H, Van Meervelt, L.
Deposit date:2022-09-26
Release date:2023-04-05
Last modified:2024-11-13
Method:X-RAY DIFFRACTION (1.55 Å)
Cite:Oxygen-induced chromophore degradation in the photoswitchable red fluorescent protein rsCherry.
Int.J.Biol.Macromol., 239, 2023
2VAD
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BU of 2vad by Molmil
Monomeric red fluorescent protein, DsRed.M1
Descriptor: 1,2-ETHANEDIOL, CHLORIDE ION, RED FLUORESCENT PROTEIN, ...
Authors:Strongin, D.E, Bevis, B, Khuong, N, Downing, M.E, Strack, R.L, Sundaram, K, Glick, B.S, Keenan, R.J.
Deposit date:2007-08-30
Release date:2007-11-06
Last modified:2024-10-23
Method:X-RAY DIFFRACTION (1.59 Å)
Cite:Structural Rearrangements Near the Chromophore Influence the Maturation Speed and Brightness of Dsred Variants.
Protein Eng.Des.Sel., 20, 2007
2H5R
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BU of 2h5r by Molmil
Crystal structure of mStrawberry at pH 10.5
Descriptor: mStrawberry
Authors:Shu, X, Remington, S.J.
Deposit date:2006-05-26
Release date:2006-08-22
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Novel Chromophores and Buried Charges Control Color in mFruits
Biochemistry, 45, 2006
3B32
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BU of 3b32 by Molmil
Crystal Structure of Calcium-Saturated Calmodulin N-Terminal Domain Fragment, Residues 1-75
Descriptor: CALCIUM ION, Calmodulin
Authors:Newman, R.A, Shea, M.A.
Deposit date:2007-10-19
Release date:2007-11-13
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Thermodynamics and conformational change governing domain-domain interactions of calmodulin.
Methods Enzymol., 466, 2009
1G4Y
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BU of 1g4y by Molmil
1.60 A CRYSTAL STRUCTURE OF THE GATING DOMAIN FROM SMALL CONDUCTANCE POTASSIUM CHANNEL COMPLEXED WITH CALCIUM-CALMODULIN
Descriptor: CALCIUM ION, CALCIUM-ACTIVATED POTASSIUM CHANNEL RSK2, CALMODULIN, ...
Authors:Schumacher, M.A, Rivard, A, Bachinger, H.P, Adelman, J.P.
Deposit date:2001-01-07
Release date:2001-05-09
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Structure of the gating domain of a Ca2+-activated K+ channel complexed with Ca2+/calmodulin.
Nature, 410, 2001
4G28
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BU of 4g28 by Molmil
Calcium-calmodulin complexed with the calmodulin binding domain from a small conductance potassium channel splice variant and EBIO-1
Descriptor: 1-ethyl-1,3-dihydro-2H-benzimidazol-2-one, CALCIUM ION, Calmodulin, ...
Authors:Zhang, M, Pascal, J.M, Zhang, J.-F.
Deposit date:2012-07-11
Release date:2012-09-12
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (1.63 Å)
Cite:Identification of the functional binding pocket for compounds targeting small-conductance Ca(2+)-activated potassium channels.
Nat Commun, 3, 2012
2VAE
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BU of 2vae by Molmil
Fast maturing red fluorescent protein, DsRed.T4
Descriptor: 1,2-ETHANEDIOL, RED FLUORESCENT PROTEIN
Authors:Strongin, D.E, Bevis, B, Khuong, N, Downing, M.E, Strack, R.L, Sundaram, K, Glick, B.S, Keenan, R.J.
Deposit date:2007-08-31
Release date:2007-11-06
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (1.64 Å)
Cite:Structural Rearrangements Near the Chromophore Influence the Maturation Speed and Brightness of Dsred Variants.
Protein Eng.Des.Sel., 20, 2007
4G27
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BU of 4g27 by Molmil
Calcium-calmodulin complexed with the calmodulin binding domain from a small conductance potassium channel splice variant and phenylurea
Descriptor: 1-phenylurea, CALCIUM ION, Calmodulin, ...
Authors:Zhang, M, Pascal, J.M, Zhang, J.-F.
Deposit date:2012-07-11
Release date:2012-09-12
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Identification of the functional binding pocket for compounds targeting small-conductance Ca(2+)-activated potassium channels.
Nat Commun, 3, 2012
4J9Z
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BU of 4j9z by Molmil
Calcium-calmodulin complexed with the calmodulin binding domain from a small conductance potassium channel splice variant and NS309
Descriptor: (3E)-6,7-dichloro-3-(hydroxyimino)-1,3-dihydro-2H-indol-2-one, CALCIUM ION, Calmodulin, ...
Authors:Zhang, M, Pascal, J.M, Zhang, J.-F.
Deposit date:2013-02-17
Release date:2013-03-27
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (1.66 Å)
Cite:Unstructured to structured transition of an intrinsically disordered protein peptide in coupling Ca2+-sensing and SK channel activation.
Proc.Natl.Acad.Sci.USA, 110, 2013
3SG6
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BU of 3sg6 by Molmil
Crystal Structure of Dimeric GCaMP2-LIA(linker 1)
Descriptor: CALCIUM ION, Myosin light chain kinase, Green fluorescent protein, ...
Authors:Schreiter, E.R, Akerboom, J, Looger, L.L.
Deposit date:2011-06-14
Release date:2012-06-20
Last modified:2023-12-06
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Optimization of a GCaMP calcium indicator for neural activity imaging.
J.Neurosci., 32, 2012
3EVU
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BU of 3evu by Molmil
Crystal structure of Calcium bound dimeric GCAMP2
Descriptor: CALCIUM ION, Myosin light chain kinase, Green fluorescent protein, ...
Authors:Wang, Q, Shui, B, Kotlikoff, M.I, Sondermann, H.
Deposit date:2008-10-13
Release date:2008-12-09
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Structural Basis for Calcium Sensing by GCaMP2.
Structure, 16, 2008
6MBA
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BU of 6mba by Molmil
Crystal Structure of Human Nav1.4 CTerminal Domain in Complex with apo Calmodulin
Descriptor: 1,2-ETHANEDIOL, 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, CARBONATE ION, ...
Authors:Yoder, J, Gabelli, S.B, Amzel, L.M.
Deposit date:2018-08-29
Release date:2019-04-10
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.799 Å)
Cite:Ca2+-dependent regulation of sodium channels NaV1.4 and NaV1.5 is controlled by the post-IQ motif.
Nat Commun, 10, 2019
3EK7
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BU of 3ek7 by Molmil
Calcium-saturated GCaMP2 dimer
Descriptor: CALCIUM ION, Myosin light chain kinase, Green fluorescent protein, ...
Authors:Akerboom, J, Velez Rivera, J.D, Looger, L.L, Schreiter, E.R.
Deposit date:2008-09-18
Release date:2008-12-16
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Crystal Structures of the GCaMP Calcium Sensor Reveal the Mechanism of Fluorescence Signal Change and Aid Rational Design
J.Biol.Chem., 284, 2009
3SG5
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BU of 3sg5 by Molmil
Crystal Structure of Dimeric GCaMP3-D380Y, QP(linker 1), LP(linker 2)
Descriptor: CALCIUM ION, GLYCEROL, Myosin light chain kinase, ...
Authors:Schreiter, E.R, Akerboom, J, Looger, L.L.
Deposit date:2011-06-14
Release date:2012-06-20
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Optimization of a GCaMP calcium indicator for neural activity imaging.
J.Neurosci., 32, 2012
3SG7
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BU of 3sg7 by Molmil
Crystal Structure of GCaMP3-KF(linker 1)
Descriptor: CALCIUM ION, Myosin light chain kinase, Green fluorescent protein, ...
Authors:Schreiter, E.R, Akerboom, J, Looger, L.L.
Deposit date:2011-06-14
Release date:2012-06-20
Last modified:2024-11-06
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Optimization of a GCaMP calcium indicator for neural activity imaging.
J.Neurosci., 32, 2012
2HQW
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BU of 2hqw by Molmil
Crystal Structure of Ca2+/Calmodulin bound to NMDA Receptor NR1C1 peptide
Descriptor: CALCIUM ION, Calmodulin, Glutamate NMDA receptor subunit zeta 1
Authors:Akyol, Z, Gakhar, L, Sorensen, B.R, Hell, J.H, Shea, M.A.
Deposit date:2006-07-19
Release date:2007-11-13
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:The NMDA Receptor NR1 C1 Region Bound to Calmodulin: Structural Insights into Functional Differences between Homologous Domains.
Structure, 15, 2007
3SJQ
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BU of 3sjq by Molmil
Crystal structure of a small conductance potassium channel splice variant complexed with calcium-calmodulin
Descriptor: 1-phenylurea, CALCIUM ION, Calmodulin, ...
Authors:Zhang, M, Pascal, J.M, Zhang, J.-F.
Deposit date:2011-06-21
Release date:2012-05-30
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structural basis for calmodulin as a dynamic calcium sensor.
Structure, 20, 2012

 

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