Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
PDB: 185 results

2I5R
DownloadVisualize
BU of 2i5r by Molmil
Structure of small Toprim domain-containing protein from B. stearothermophilus in complex with Mg2+
Descriptor: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, GLYCEROL, MAGNESIUM ION, ...
Authors:Rezacova, P, Borek, D, Otwinowski, Z, Joachimiak, A, Moy, S.F, Midwest Center for Structural Genomics (MCSG)
Deposit date:2006-08-25
Release date:2007-07-03
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Crystal structure and putative function of small Toprim domain-containing protein from Bacillus stearothermophilus.
Proteins, 70, 2007
6Z2B
DownloadVisualize
BU of 6z2b by Molmil
Toprim domain of RNase M5 bound with two Mg2+ ions
Descriptor: MAGNESIUM ION, Ribonuclease M5
Authors:Oerum, S, Catala, M, Tisne, C.
Deposit date:2020-05-15
Release date:2021-03-17
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (2.138 Å)
Cite:Structural studies of RNase M5 reveal two-metal-ion supported two-step dsRNA cleavage for 5S rRNA maturation.
Rna Biol., 18, 2021
2FCJ
DownloadVisualize
BU of 2fcj by Molmil
Structure of small TOPRIM domain protein from Bacillus stearothermophilus.
Descriptor: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, GLYCEROL, SULFATE ION, ...
Authors:Rezacova, P, Chen, Y, Borek, D, Collart, F, Joachimiak, A, Otwinowski, Z, Midwest Center for Structural Genomics (MCSG)
Deposit date:2005-12-12
Release date:2006-01-24
Last modified:2012-10-24
Method:X-RAY DIFFRACTION (1.3 Å)
Cite:Crystal structure and putative function of small Toprim domain-containing protein from Bacillus stearothermophilus.
Proteins, 70, 2008
1T6T
DownloadVisualize
BU of 1t6t by Molmil
putative protein from Aquifex aeolicus
Descriptor: putative protein
Authors:Cuff, M.E, Zhou, M, Collart, F, Joachimiak, A, Midwest Center for Structural Genomics (MCSG)
Deposit date:2004-05-07
Release date:2004-08-03
Last modified:2017-10-11
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:putative protein from Aquifex aeolicus
To be Published
5W35
DownloadVisualize
BU of 5w35 by Molmil
Crystal structure of the RNA polymerase domain (RPD) of Mycobacterium tuberculosis primase DnaG in complex with a double-stranded DNA oligomer with a 1-nucleotide overhang
Descriptor: DNA primase, synthetic DNA oligomer 5'-CCACTTCCGGTC, synthetic DNA oligomer 5'-TGACCGGAAGTGG
Authors:Hou, C, Tsodikov, O.V.
Deposit date:2017-06-07
Release date:2018-03-28
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (3.31 Å)
Cite:Structures of the Catalytic Domain of Bacterial Primase DnaG in Complexes with DNA Provide Insight into Key Priming Events.
Biochemistry, 57, 2018
5W36
DownloadVisualize
BU of 5w36 by Molmil
Crystal structure of the RNA polymerase domain (RPD) of Mycobacterium tuberculosis primase DnaG in complex with a double-stranded DNA oligomer with a 6-nucleotide overhang
Descriptor: DNA primase, STRONTIUM ION, synthetic DNA 5'-TATCGTCCCGCCTC
Authors:Hou, C, Tsodikov, O.V.
Deposit date:2017-06-07
Release date:2018-03-28
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (2.46 Å)
Cite:Structures of the Catalytic Domain of Bacterial Primase DnaG in Complexes with DNA Provide Insight into Key Priming Events.
Biochemistry, 57, 2018
1Q57
DownloadVisualize
BU of 1q57 by Molmil
The Crystal Structure of the Bifunctional Primase-Helicase of Bacteriophage T7
Descriptor: DNA primase/helicase
Authors:Toth, E.A, Li, Y, Sawaya, M.R, Cheng, Y, Ellenberger, T.
Deposit date:2003-08-06
Release date:2003-11-25
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (3.45 Å)
Cite:The Crystal Structure of the Bifunctional Primase-Helicase of Bacteriophage T7
Mol.Cell, 12, 2003
1NUI
DownloadVisualize
BU of 1nui by Molmil
Crystal Structure of the primase fragment of Bacteriophage T7 primase-helicase protein
Descriptor: DNA primase/helicase, MAGNESIUM ION, ZINC ION
Authors:Kato, M, Ito, T, Wagner, G, Richardson, C.C, Ellenberger, T.
Deposit date:2003-01-31
Release date:2003-05-27
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Modular Architecture of the Bacteriophage T7 Primase Couples RNA primer Synthesis to DNA Synthesis
Mol.Cell, 11, 2003
2AU3
DownloadVisualize
BU of 2au3 by Molmil
Crystal Structure of the Aquifex aeolicus primase (Zinc Binding and RNA Polymerase Domains)
Descriptor: DNA primase, ZINC ION
Authors:Corn, J.E, Pease, P.J, Hura, G.L, Berger, J.M.
Deposit date:2005-08-26
Release date:2005-11-15
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crosstalk between primase subunits can act to regulate primer synthesis in trans.
Mol.Cell, 20, 2005
1VDD
DownloadVisualize
BU of 1vdd by Molmil
Crystal structure of recombinational repair protein RecR
Descriptor: IMIDAZOLE, Recombination protein recR, ZINC ION
Authors:Lee, B.I, Kim, K.H, Suh, S.W.
Deposit date:2004-03-20
Release date:2004-05-18
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Ring-shaped architecture of RecR: implications for its role in homologous recombinational DNA repair
Embo J., 23, 2004
5W34
DownloadVisualize
BU of 5w34 by Molmil
Crystal structure of the RNA polymerase domain (RPD) of Mycobacterium tuberculosis primase DnaG in complex with double-stranded DNA GACCGGAAGTGG
Descriptor: DNA oligomer 5'-CCACTTCCGGTC, DNA oligomer 5'-GACCGGAAGTGG, DNA primase
Authors:Hou, C, Tsodikov, O.V.
Deposit date:2017-06-07
Release date:2018-03-28
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (2.95 Å)
Cite:Structures of the Catalytic Domain of Bacterial Primase DnaG in Complexes with DNA Provide Insight into Key Priming Events.
Biochemistry, 57, 2018
5W33
DownloadVisualize
BU of 5w33 by Molmil
Crystal structure of the RNA polymerase domain (RPD) of Mycobacterium tuberculosis primase DnaG
Descriptor: DNA primase, SULFATE ION
Authors:Hou, C, Biswas, T, Tsodikov, O.V.
Deposit date:2017-06-07
Release date:2018-03-28
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (2.85 Å)
Cite:Structures of the Catalytic Domain of Bacterial Primase DnaG in Complexes with DNA Provide Insight into Key Priming Events.
Biochemistry, 57, 2018
2V1C
DownloadVisualize
BU of 2v1c by Molmil
Crystal structure and mutational study of RecOR provide insight into its role in DNA repair
Descriptor: HYPOTHETICAL PROTEIN, RECOMBINATION PROTEIN RECR, ZINC ION
Authors:Timmins, J, Leiros, I, McSweeney, S.
Deposit date:2007-05-23
Release date:2007-07-03
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (3.8 Å)
Cite:Crystal Structure and Mutational Study of Recor Provide Insight Into its Mode of DNA Binding.
Embo J., 26, 2007
5GUJ
DownloadVisualize
BU of 5guj by Molmil
Crystal structure of the Bacillus subtilis DnaG RNA Polymerase Domain, natural degradation of full length DnaG
Descriptor: DNA primase
Authors:Zhou, Y, Liu, Z, Wang, G.
Deposit date:2016-08-29
Release date:2017-04-19
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Structural Insight into the Specific DNA Template Binding to DnaG primase in Bacteria
Sci Rep, 7, 2017
4JCV
DownloadVisualize
BU of 4jcv by Molmil
Crystal structure of the RecOR complex in an open conformation
Descriptor: DNA repair protein RecO, Recombination protein RecR, ZINC ION
Authors:Radzimanowski, J, McSweeney, S, Timmins, J.
Deposit date:2013-02-22
Release date:2013-08-07
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (3.34 Å)
Cite:An 'open' structure of the RecOR complex supports ssDNA binding within the core of the complex.
Nucleic Acids Res., 41, 2013
6N7I
DownloadVisualize
BU of 6n7i by Molmil
Structure of bacteriophage T7 E343Q mutant gp4 helicase-primase in complex with ssDNA, dTTP, AC dinucleotide and CTP (gp4(5)-DNA)
Descriptor: DNA (25-MER), DNA primase/helicase, MAGNESIUM ION, ...
Authors:Gao, Y, Cui, Y, Zhou, Z, Yang, W.
Deposit date:2018-11-27
Release date:2019-03-06
Last modified:2024-03-20
Method:ELECTRON MICROSCOPY (3.2 Å)
Cite:Structures and operating principles of the replisome.
Science, 363, 2019
6N7T
DownloadVisualize
BU of 6n7t by Molmil
Structure of bacteriophage T7 E343Q mutant gp4 helicase-primase in complex with ssDNA, dTTP, AC dinucleotide and CTP (form III)
Descriptor: DNA (25-MER), DNA primase/helicase, MAGNESIUM ION, ...
Authors:Gao, Y, Cui, Y, Zhou, Z, Yang, W.
Deposit date:2018-11-28
Release date:2019-03-06
Last modified:2024-03-20
Method:ELECTRON MICROSCOPY (3.9 Å)
Cite:Structures and operating principles of the replisome.
Science, 363, 2019
6N7S
DownloadVisualize
BU of 6n7s by Molmil
Structure of bacteriophage T7 E343Q mutant gp4 helicase-primase in complex with ssDNA, dTTP, AC dinucleotide and CTP (form II)
Descriptor: DNA (25-MER), DNA primase/helicase, MAGNESIUM ION, ...
Authors:Gao, Y, Cui, Y, Zhou, Z, Yang, W.
Deposit date:2018-11-28
Release date:2019-03-06
Last modified:2024-03-20
Method:ELECTRON MICROSCOPY (4.6 Å)
Cite:Structures and operating principles of the replisome.
Science, 363, 2019
6N7N
DownloadVisualize
BU of 6n7n by Molmil
Structure of bacteriophage T7 E343Q mutant gp4 helicase-primase in complex with ssDNA, dTTP, AC dinucleotide and CTP (form I)
Descriptor: DNA (5'-D(P*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*T)-3'), DNA primase/helicase, MAGNESIUM ION, ...
Authors:Gao, Y, Cui, Y, Zhou, Z, Yang, W.
Deposit date:2018-11-27
Release date:2019-03-06
Last modified:2024-03-20
Method:ELECTRON MICROSCOPY (3.5 Å)
Cite:Structures and operating principles of the replisome.
Science, 363, 2019
6N7V
DownloadVisualize
BU of 6n7v by Molmil
Structure of bacteriophage T7 gp4 (helicase-primase, E343Q mutant) in complex with ssDNA, dTTP, AC dinucleotide, and CTP (from multiple lead complexes)
Descriptor: DNA (93-MER), DNA primase/helicase, MAGNESIUM ION, ...
Authors:Gao, Y, Fox, T, Val, N, Yang, W.
Deposit date:2018-11-28
Release date:2019-03-06
Last modified:2024-03-20
Method:ELECTRON MICROSCOPY (3.8 Å)
Cite:Structures and operating principles of the replisome.
Science, 363, 2019
4E2K
DownloadVisualize
BU of 4e2k by Molmil
The structure of the S. aureus DnaG RNA Polymerase Domain
Descriptor: BENZAMIDINE, DNA primase
Authors:Rymer, R.U, Solorio, F.A, Clement, C, Corn, J.E, Wang, J.D, Berger, J.M.
Deposit date:2012-03-08
Release date:2012-08-01
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:Binding Mechanism of Metal-NTP Substrates and Stringent-Response Alarmones to Bacterial DnaG-Type Primases.
Structure, 20, 2012
4EDT
DownloadVisualize
BU of 4edt by Molmil
The structure of the S. aureus DnaG RNA Polymerase Domain bound to ppGpp and Manganese
Descriptor: BENZAMIDINE, DNA primase, GUANOSINE-5',3'-TETRAPHOSPHATE, ...
Authors:Rymer, R.U, Solorio, F.A, Chu, C, Corn, J.E, Wang, J.D, Berger, J.M.
Deposit date:2012-03-27
Release date:2012-07-25
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.005 Å)
Cite:Binding Mechanism of Metal-NTP Substrates and Stringent-Response Alarmones to Bacterial DnaG-Type Primases.
Structure, 20, 2012
4EDR
DownloadVisualize
BU of 4edr by Molmil
The structure of the S. aureus DnaG RNA Polymerase Domain bound to UTP and Manganese
Descriptor: BENZAMIDINE, DNA primase, MANGANESE (II) ION, ...
Authors:Rymer, R.U, Solorio, F.A, Chu, C, Corn, J.E, Wang, J.D, Berger, J.M.
Deposit date:2012-03-27
Release date:2012-07-25
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.01 Å)
Cite:Binding Mechanism of Metal-NTP Substrates and Stringent-Response Alarmones to Bacterial DnaG-Type Primases.
Structure, 20, 2012
4EDV
DownloadVisualize
BU of 4edv by Molmil
The structure of the S. aureus DnaG RNA Polymerase Domain bound to pppGpp and Manganese
Descriptor: BENZAMIDINE, DNA primase, MANGANESE (II) ION, ...
Authors:Rymer, R.U, Solorio, F.A, Chu, C, Corn, J.E, Wang, J.D, Berger, J.M.
Deposit date:2012-03-27
Release date:2012-07-25
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.01 Å)
Cite:Binding Mechanism of Metal-NTP Substrates and Stringent-Response Alarmones to Bacterial DnaG-Type Primases.
Structure, 20, 2012
4EE1
DownloadVisualize
BU of 4ee1 by Molmil
The structure of the S. aureus DnaG RNA Polymerase Domain bound to CTP and Manganese
Descriptor: BENZAMIDINE, CYTIDINE-5'-TRIPHOSPHATE, DNA primase, ...
Authors:Rymer, R.U, Solorio, F.A, Chu, C, Corn, J.E, Wang, J.D, Berger, J.M.
Deposit date:2012-03-28
Release date:2012-07-25
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.02 Å)
Cite:Binding Mechanism of Metal-NTP Substrates and Stringent-Response Alarmones to Bacterial DnaG-Type Primases.
Structure, 20, 2012

222624

PDB entries from 2024-07-17

PDB statisticsPDBj update infoContact PDBjnumon