Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
PDB: 202 results

4V11
DownloadVisualize
BU of 4v11 by Molmil
Structure of Synaptotagmin-1 with SV2A peptide phosphorylated at Thr84
Descriptor: CALCIUM ION, GLYCEROL, SYNAPTIC VESICLE GLYCOPROTEIN 2A, ...
Authors:Zhang, N, Gordon, S.L, Fritsch, M.J, Esoof, N, Campbell, D, Gourlay, R, Velupillai, S, Macartney, T, Peggie, M, vanAalten, D.M.F, Cousin, M.A, Alessi, D.R.
Deposit date:2014-09-22
Release date:2015-02-25
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Phosphorylation of Synaptic Vesicle Protein 2A at Thr84 by Casein Kinase 1 Family Kinases Controls the Specific Retrieval of Synaptotagmin-1.
J.Neurosci., 35, 2015
6IEJ
DownloadVisualize
BU of 6iej by Molmil
The C2 domain of cytosolic phospholipase A2 alpha bound to phosphatidylcholine
Descriptor: 1,2-dihexanoyl-sn-glycero-3-phosphocholine, CALCIUM ION, Cytosolic phospholipase A2, ...
Authors:Hirano, Y, Gao, Y.G, Stephenson, D.J, Vu, N.T, Malinina, L, Chalfant, C.E, Patel, D.J, Brown, R.E.
Deposit date:2018-09-14
Release date:2019-05-22
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.206 Å)
Cite:Structural basis of phosphatidylcholine recognition by the C2-domain of cytosolic phospholipase A2alpha.
Elife, 8, 2019
1K5W
DownloadVisualize
BU of 1k5w by Molmil
THREE-DIMENSIONAL STRUCTURE OF THE SYNAPTOTAGMIN 1 C2B-DOMAIN: SYNAPTOTAGMIN 1 AS A PHOSPHOLIPID BINDING MACHINE
Descriptor: CALCIUM ION, Synaptotagmin I
Authors:Fernandez, I, Arac, D, Ubach, J, Gerber, S.H, Shin, O, Gao, Y, Anderson, R.G.W, Sudhof, T.C, Rizo, J.
Deposit date:2001-10-12
Release date:2002-01-23
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:Three-dimensional structure of the synaptotagmin 1 C2B-domain: synaptotagmin 1 as a phospholipid binding machine.
Neuron, 32, 2001
8C5H
DownloadVisualize
BU of 8c5h by Molmil
NbSyt1 anti-(rat Synaptotagmin-1) nanobody bound to target cytosolic domain of Synaptotagmin-1
Descriptor: CALCIUM ION, GLYCEROL, NbSyt1 nanobody, ...
Authors:Martinez-Carranza, M, Stenmark, P.
Deposit date:2023-01-09
Release date:2023-08-02
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.68 Å)
Cite:A Versatile Synaptotagmin-1 Nanobody Provides Perturbation-Free Live Synaptic Imaging And Low Linkage-Error in Super-Resolution Microscopy.
Small Methods, 7, 2023
5YQ3
DownloadVisualize
BU of 5yq3 by Molmil
Solution NMR Structure and Backbone Dynamics of the Partially Disordered Arabidopsis thaliana Phloem Protein 16-1, A Putative mRNA Transporter
Descriptor: At3g55470
Authors:Bhuyan, A.K, Sashi, P.
Deposit date:2017-11-04
Release date:2018-04-18
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Solution NMR Structure and Backbone Dynamics of Partially Disordered Arabidopsis thaliana Phloem Protein 16-1, a Putative mRNA Transporter.
Biochemistry, 57, 2018
4DNL
DownloadVisualize
BU of 4dnl by Molmil
Crystal structure of a C2 domain of a protein kinase C alpha (PRKCA) from Homo sapiens at 1.90 A resolution
Descriptor: Protein kinase C alpha type, SODIUM ION
Authors:Joint Center for Structural Genomics (JCSG), Partnership for T-Cell Biology (TCELL)
Deposit date:2012-02-08
Release date:2012-02-22
Last modified:2023-02-01
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Crystal structure of a C2 domain of a protein kinase C alpha (PRKCA) from Homo sapiens at 1.90 A resolution
To be published
2B3R
DownloadVisualize
BU of 2b3r by Molmil
Crystal structure of the C2 domain of class II phosphatidylinositide 3-kinase C2
Descriptor: Phosphatidylinositol-4-phosphate 3-kinase C2 domain-containing alpha polypeptide, SULFATE ION
Authors:Liu, L, Song, X, He, D, Komma, C, Kita, A, Verbasius, J.V, Bellamy, H, Miki, K, Czech, M.P, Zhou, G.W.
Deposit date:2005-09-20
Release date:2005-12-13
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Crystal structure of the C2 domain of class II phosphatidylinositide 3-kinase C2alpha.
J.Biol.Chem., 281, 2006
2R83
DownloadVisualize
BU of 2r83 by Molmil
Crystal structure analysis of human synaptotagmin 1 C2A-C2B
Descriptor: CHLORIDE ION, Synaptotagmin-1
Authors:Sutton, R.B, Fuson, K.L, Montes, M, Robert, J.J.
Deposit date:2007-09-10
Release date:2008-02-12
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Structure of human synaptotagmin 1 C2AB in the absence of Ca2+ reveals a novel domain association.
Biochemistry, 46, 2007
6NYT
DownloadVisualize
BU of 6nyt by Molmil
Munc13-1 C2B-domain, calcium bound
Descriptor: CALCIUM ION, CHLORIDE ION, GLYCEROL, ...
Authors:Tomchick, D.R, Rizo, J, Machius, M, Lu, J.
Deposit date:2019-02-12
Release date:2019-02-20
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.369 Å)
Cite:Munc13 C2B domain is an activity-dependent Ca2+ regulator of synaptic exocytosis.
Nat. Struct. Mol. Biol., 17, 2010
4WEE
DownloadVisualize
BU of 4wee by Molmil
High-resolution structure of Synaptotagmin 1 C2A
Descriptor: SODIUM ION, SULFATE ION, Synaptotagmin-1
Authors:Sutton, R.B, Fuson, K.L.
Deposit date:2014-09-09
Release date:2014-10-01
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (0.891 Å)
Cite:High-resolution structure of Synaptotagmin 1 C2A
To Be Published
6NYC
DownloadVisualize
BU of 6nyc by Molmil
Munc13-1 C2B-domain, calcium free
Descriptor: 2-[3-(2-HYDROXY-1,1-DIHYDROXYMETHYL-ETHYLAMINO)-PROPYLAMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, CHLORIDE ION, Munc13-1
Authors:Tomchick, D.R, Rizo, J, Machius, M, Lu, J.
Deposit date:2019-02-11
Release date:2019-02-20
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.893 Å)
Cite:Munc13 C2B domain is an activity-dependent Ca2+ regulator of synaptic exocytosis.
Nat. Struct. Mol. Biol., 17, 2010
3W56
DownloadVisualize
BU of 3w56 by Molmil
Structure of a C2 domain
Descriptor: C2 domain protein
Authors:Traore, D.A.K, Whisstock, J.C.
Deposit date:2013-01-24
Release date:2013-10-23
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Defining the interaction of perforin with calcium and the phospholipid membrane.
Biochem.J., 456, 2013
6U4W
DownloadVisualize
BU of 6u4w by Molmil
1.4 A structure of a pathogenic human Syt 1 C2B (D366E)
Descriptor: SULFATE ION, Synaptotagmin-1
Authors:Dominguez, M.J, Bradberry, M.M, Chapman, E.R, Sutton, R.B.
Deposit date:2019-08-26
Release date:2020-05-13
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Molecular Basis for Synaptotagmin-1-Associated Neurodevelopmental Disorder.
Neuron, 107, 2020
4V29
DownloadVisualize
BU of 4v29 by Molmil
The crystal structure of Arabidopsis thaliana CAR4 in complex with two calcium ions
Descriptor: AT3G17980, CALCIUM ION
Authors:Diaz, M, Albert, A.
Deposit date:2014-10-07
Release date:2014-12-17
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:C2-Domain Abscisic Acid-Related Proteins Mediate the Interaction of Pyr/Pyl/Rcar Abscisic Acid Receptors with the Plasma Membrane and Regulate Abscisic Acid Sensitivity in Arabidopsis.
Plant Cell, 26, 2014
5H4Z
DownloadVisualize
BU of 5h4z by Molmil
Crystal structure of S202G mutant of human SYT-5 C2A domain
Descriptor: CALCIUM ION, CHLORIDE ION, Synaptotagmin-5
Authors:Qiu, X, Ge, J, Yan, X, Gao, Y, Teng, M, Niu, L.
Deposit date:2016-11-02
Release date:2016-11-30
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (3.01 Å)
Cite:Structural analysis of Ca(2+)-binding pocket of synaptotagmin 5 C2A domain
Int. J. Biol. Macromol., 95, 2017
3W57
DownloadVisualize
BU of 3w57 by Molmil
Structure of a C2 domain
Descriptor: C2 domain protein, CALCIUM ION
Authors:Traore, D.A.K, Whisstock, J.C.
Deposit date:2013-01-24
Release date:2013-10-23
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.662 Å)
Cite:Defining the interaction of perforin with calcium and the phospholipid membrane.
Biochem.J., 456, 2013
5H4Y
DownloadVisualize
BU of 5h4y by Molmil
Crystal structure of human synaptotagmin 5 C2A domain
Descriptor: ACETATE ION, CALCIUM ION, Synaptotagmin-5
Authors:Qiu, X, Gao, Y, Teng, M, Niu, L.
Deposit date:2016-11-02
Release date:2016-11-30
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structural analysis of Ca(2+)-binding pocket of synaptotagmin 5 C2A domain
Int. J. Biol. Macromol., 95, 2017
2UZP
DownloadVisualize
BU of 2uzp by Molmil
Crystal structure of the C2 domain of human protein kinase C gamma.
Descriptor: 1,2-ETHANEDIOL, CALCIUM ION, COBALT (II) ION, ...
Authors:Pike, A.C.W, Amos, A, Johansson, C, Sobott, F, Savitsky, P, Berridge, G, Fedorov, O, Umeano, C, Gorrec, F, Bunkoczi, G, Debreczeni, J, von Delft, F, Arrowsmith, C.H, Edwards, A, Weigelt, J, Sundstrom, M, Knapp, S.
Deposit date:2007-04-30
Release date:2007-05-29
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal Structure of C2 Domain of Protein Kinase C Gamma
To be Published
5LO8
DownloadVisualize
BU of 5lo8 by Molmil
The C2B domain of Rabphilin 3A in complex with PI(4,5)P2
Descriptor: CALCIUM ION, GLYCEROL, Rabphilin-3A, ...
Authors:Ferrer-Orta, C, Verdaguer, N.
Deposit date:2016-08-08
Release date:2017-06-21
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Structural characterization of the Rabphilin-3A-SNAP25 interaction.
Proc. Natl. Acad. Sci. U.S.A., 114, 2017
9BKY
DownloadVisualize
BU of 9bky by Molmil
Crystal structure of a C2 domain from Trichomonas vaginalis (sulfate bound)
Descriptor: GLYCEROL, SULFATE ION, XYPPX repeat family protein
Authors:Seattle Structural Genomics Center for Infectious Disease, Seattle Structural Genomics Center for Infectious Disease (SSGCID)
Deposit date:2024-04-29
Release date:2024-05-08
Method:X-RAY DIFFRACTION (1.73 Å)
Cite:Crystal structure of a C2 domain from Trichomonas vaginalis (sulfate bound)
To be published
9BKW
DownloadVisualize
BU of 9bkw by Molmil
Crystal structure of a C2 domain from Trichomonas vaginalis
Descriptor: XYPPX repeat family protein
Authors:Seattle Structural Genomics Center for Infectious Disease, Seattle Structural Genomics Center for Infectious Disease (SSGCID)
Deposit date:2024-04-29
Release date:2024-05-08
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Crystal structure of a C2 domain from Trichomonas vaginalis
To be published
5LOB
DownloadVisualize
BU of 5lob by Molmil
Structure of the Ca2+-bound Rabphilin3A C2B- SNAP25 complex (C2 space group)
Descriptor: CALCIUM ION, GLYCEROL, Rabphilin-3A, ...
Authors:Ferrer-Orta, C, Verdaguer, N.
Deposit date:2016-08-09
Release date:2017-06-21
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (3.3 Å)
Cite:Structural characterization of the Rabphilin-3A-SNAP25 interaction.
Proc. Natl. Acad. Sci. U.S.A., 114, 2017
5LOW
DownloadVisualize
BU of 5low by Molmil
Structure of the Ca2+-bound Rabphilin 3A C2B domain SNAP25 complex (P21 space group)
Descriptor: CALCIUM ION, GLYCEROL, Rabphilin-3A, ...
Authors:Verdaguer, N, Ferrer-Orta, C.
Deposit date:2016-08-10
Release date:2017-06-21
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Structural characterization of the Rabphilin-3A-SNAP25 interaction.
Proc. Natl. Acad. Sci. U.S.A., 114, 2017
7U4Q
DownloadVisualize
BU of 7u4q by Molmil
Human Synaptotagmin-1 C2A Y181F Ca2+ bound
Descriptor: CALCIUM ION, Synaptotagmin-1
Authors:Dominguez, M.J, Karmakar, S, Fuson, K.L, Sutton, R.B.
Deposit date:2022-02-28
Release date:2023-03-15
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.56 Å)
Cite:Human Synaptotagmin-1 C2A Y181F Ca2+ bound
To Be Published
7TUA
DownloadVisualize
BU of 7tua by Molmil
Human Synaptotagmin-1 C2B Y312F without Ca2+
Descriptor: SULFATE ION, Synaptotagmin
Authors:Dominguez, M.J, Karmakar, S, Fuson, K.L, Sutton, R.B.
Deposit date:2022-02-02
Release date:2023-03-22
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.35 Å)
Cite:Human Synaptotagmin-1 C2B Y312F without Ca2+
To Be Published

222036

PDB entries from 2024-07-03

PDB statisticsPDBj update infoContact PDBjnumon