Structure of a plant specific C2 domain protein, OsGAP1 from rice

Summary for 4RJ9

DescriptorC2 domain-containing protein-like, POTASSIUM ION (3 entities in total)
Functional Keywordsbeta_sandwich, lipid selectivity, calcium-dependent, phospholipid binding, membrane targeting, cytosol, ligase
Biological sourceOryza sativa Japonica Group (Japonica rice)
Cellular locationCell membrane  Q6YWF1
Total number of polymer chains1
Total molecular weight18651.81
Miao, R.,Fong, Y.H.,Wong, K.B.,Lam, H.M. (deposition date: 2014-10-08, release date: 2015-08-26, Last modification date: 2015-10-21)
Primary citation
Yung, Y.L.,Cheung, M.Y.,Miao, R.,Fong, Y.H.,Li, K.P.,Yu, M.H.,Chye, M.L.,Wong, K.B.,Lam, H.M.
Site-directed Mutagenesis Shows the Significance of Interactions with Phospholipids and the G-protein OsYchF1 for the Physiological Functions of the Rice GTPase-activating Protein 1 (OsGAP1).
J.Biol.Chem., 290:23984-23996, 2015
PubMed: 26286751 (PDB entries with the same primary citation)
DOI: 10.1074/jbc.M115.655639
MImport into Mendeley
Experimental method

Structure validation

RfreeClashscoreRamachandran outliersSidechain outliersRSRZ outliers 0.2045 0.6% 1.4% 8.7%MetricValuePercentile RanksWorseBetterPercentile relative to all X-ray structuresPercentile relative to X-ray structures of similar resolution
Download full validation reportDownload
PDB entries from 2020-10-21