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PDB: 751 results

2P65
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BU of 2p65 by Molmil
Crystal Structure of the first nucleotide binding domain of chaperone ClpB1, putative, (Pv089580) from Plasmodium Vivax
Descriptor: Hypothetical protein PF08_0063
Authors:Wernimont, A.K, Lew, J, Kozieradzki, I, Lin, Y.H, Hassanali, A, Zhao, Y, Arrowsmith, C.H, Edwards, A.M, Weigelt, J, Sundstrom, M, Bochkarev, A, Hui, R, Artz, J.D, Structural Genomics Consortium (SGC)
Deposit date:2007-03-16
Release date:2007-04-03
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Crystal Structure of the first nucleotide binding domain of chaperone ClpB1, putative, (Pv089580) from Plasmodium Vivax
To be Published
4YPN
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BU of 4ypn by Molmil
Crystal structure of a LonA fragment containing the 3-helix bundle and the AAA-alpha/beta domain
Descriptor: Lon protease
Authors:Chang, C.-I, Lin, C.-C.
Deposit date:2015-03-13
Release date:2016-03-16
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.07 Å)
Cite:Structural Insights into the Allosteric Operation of the Lon AAA+ Protease
Structure, 24, 2016
2CHG
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BU of 2chg by Molmil
Replication Factor C domains 1 and 2
Descriptor: MAGNESIUM ION, PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER, REPLICATION FACTOR C SMALL SUBUNIT
Authors:Seybert, A, Singleton, M.R, Cook, N, Hall, D.R, Wigley, D.B.
Deposit date:2006-03-14
Release date:2006-06-06
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Communication between Subunits within an Archaeal Clamp-Loader Complex.
Embo J., 25, 2006
6U1Y
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BU of 6u1y by Molmil
bcs1 AAA domain
Descriptor: MAGNESIUM ION, Mitochondrial chaperone BCS1, PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER
Authors:Tang, W.K, Xia, D.
Deposit date:2019-08-17
Release date:2020-02-05
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (2.17 Å)
Cite:Structures of AAA protein translocase Bcs1 suggest translocation mechanism of a folded protein.
Nat.Struct.Mol.Biol., 27, 2020
1JBK
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BU of 1jbk by Molmil
Crystal Structure of the First Nucelotide Binding Domain of ClpB
Descriptor: CLPB PROTEIN, MAGNESIUM ION
Authors:Jingzhi, L, Bingdong, S.
Deposit date:2001-06-05
Release date:2002-06-05
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal structure of E. coli Hsp100 ClpB nucleotide-binding domain 1 (NBD1) and mechanistic studies on ClpB ATPase activity.
J.Mol.Biol., 318, 2002
6PB3
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BU of 6pb3 by Molmil
Structure of Rhizobiales Trip13
Descriptor: Rhizobiales Sp. Pch2, SULFATE ION
Authors:Ye, Q, Corbett, K.D.
Deposit date:2019-06-12
Release date:2019-12-25
Last modified:2024-11-13
Method:X-RAY DIFFRACTION (2.048 Å)
Cite:HORMA Domain Proteins and a Trip13-like ATPase Regulate Bacterial cGAS-like Enzymes to Mediate Bacteriophage Immunity.
Mol.Cell, 77, 2020
6LK0
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BU of 6lk0 by Molmil
Crystal structure of human wild type TRIP13
Descriptor: Pachytene checkpoint protein 2 homolog
Authors:Wang, Y, Huang, J, Li, B, Xue, H, Tricot, G, Hu, L, Xu, Z, Sun, X, Chang, S, Gao, L, Tao, Y, Xu, H, Xie, Y, Xiao, W, Yu, D, Kong, Y, Chen, G, Sun, X, Lian, F, Zhang, N, Wu, X, Mao, Z, Zhan, F, Zhu, W, Shi, J.
Deposit date:2019-12-17
Release date:2020-01-22
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:A Small-Molecule Inhibitor Targeting TRIP13 Suppresses Multiple Myeloma Progression.
Cancer Res., 80, 2020
5VQ9
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BU of 5vq9 by Molmil
Structure of human TRIP13, Apo form
Descriptor: Pachytene checkpoint protein 2 homolog
Authors:Ye, Q, Corbett, K.D.
Deposit date:2017-05-08
Release date:2017-06-14
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (3.02 Å)
Cite:The AAA+ ATPase TRIP13 remodels HORMA domains through N-terminal engagement and unfolding.
EMBO J., 36, 2017
5VQA
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BU of 5vqa by Molmil
Structure of human TRIP13, ATP-bound form
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, Pachytene checkpoint protein 2 homolog
Authors:Ye, Q, Corbett, K.D.
Deposit date:2017-05-08
Release date:2017-06-14
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (2.54 Å)
Cite:The AAA+ ATPase TRIP13 remodels HORMA domains through N-terminal engagement and unfolding.
EMBO J., 36, 2017
5WC2
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BU of 5wc2 by Molmil
Crystal Structure of ADP-bound human TRIP13
Descriptor: ADENOSINE-5'-DIPHOSPHATE, Pachytene checkpoint protein 2 homolog
Authors:Jeong, B.-C, Luo, X.
Deposit date:2017-06-29
Release date:2018-04-25
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Mechanistic insight into TRIP13-catalyzed Mad2 structural transition and spindle checkpoint silencing.
Nat Commun, 8, 2017
7W46
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Crystal structure of Bacillus subtilis YjoB with ADP
Descriptor: ADENOSINE-5'-DIPHOSPHATE, Uncharacterized ATPase YjoB
Authors:Dahal, P, Kwon, E, Kim, D.Y.
Deposit date:2021-11-26
Release date:2022-10-19
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Crystal structure and biochemical analysis suggest that YjoB ATPase is a putative substrate-specific molecular chaperone.
Proc.Natl.Acad.Sci.USA, 119, 2022
7W42
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Crystal structure of Bacillus subtilis YjoB
Descriptor: Uncharacterized ATPase YjoB
Authors:Dahal, P, Kwon, E, Kim, D.Y.
Deposit date:2021-11-26
Release date:2022-10-19
Last modified:2024-05-29
Method:X-RAY DIFFRACTION (2.619 Å)
Cite:Crystal structure and biochemical analysis suggest that YjoB ATPase is a putative substrate-specific molecular chaperone.
Proc.Natl.Acad.Sci.USA, 119, 2022
6ZQF
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BU of 6zqf by Molmil
Cryo-EM structure of the 90S pre-ribosome from Saccharomyces cerevisiae, state Dis-B (Poly-Ala)
Descriptor: 18S rRNA, 40S ribosomal protein S1-A, 40S ribosomal protein S11-A, ...
Authors:Cheng, J, Lau, B, Venuta, G.L, Berninghausen, O, Hurt, E, Beckmann, R.
Deposit date:2020-07-09
Release date:2020-09-23
Last modified:2024-05-01
Method:ELECTRON MICROSCOPY (4.9 Å)
Cite:90 S pre-ribosome transformation into the primordial 40 S subunit.
Science, 369, 2020
2X8A
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BU of 2x8a by Molmil
Human Nuclear Valosin containing protein Like (NVL), C-terminal AAA- ATPase domain
Descriptor: NUCLEAR VALOSIN-CONTAINING PROTEIN-LIKE, PHOSPHATE ION
Authors:Moche, M, Schuetz, P, Arrowsmith, C.H, Berglund, H, Bountra, C, Collins, R, Edwards, A.M, Flodin, S, Flores, A, Graslund, S, Hammarstrom, M, Johansson, I, Kallas, A, Karlberg, T, Kotenyova, T, Kraulis, P, Nordlund, P, Nyman, T, Persson, C, Sehic, A, Siponen, M.I, Svensson, L, Thorsell, A.G, Tresaugues, L, VanDenBerg, S, Wahlberg, E, Weigelt, J, Welin, M, Wisniewska, M, Schuler, H.
Deposit date:2010-03-08
Release date:2010-03-16
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Human Nuclear Valosin Containing Protein Like (Nvl) , C-Terminal Aaa-ATPase Domain
To be Published
4W5W
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BU of 4w5w by Molmil
Rubisco activase from Arabidopsis thaliana
Descriptor: Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic, SULFATE ION
Authors:Hasse, D, Larsson, A.M, Andersson, I.
Deposit date:2014-08-19
Release date:2015-04-08
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Structure of Arabidopsis thaliana Rubisco activase
Acta Crystallogr.,Sect.D, 71, 2015
3SYK
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BU of 3syk by Molmil
Crystal structure of the AAA+ protein CbbX, selenomethionine structure
Descriptor: Protein CbbX, SULFATE ION
Authors:Mueller-Cajar, O, Stotz, M, Wendler, P, Hartl, F.U, Bracher, A, Hayer-Hartl, M.
Deposit date:2011-07-18
Release date:2011-11-09
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (3.08 Å)
Cite:Structure and function of the AAA+ protein CbbX, a red-type Rubisco activase.
Nature, 479, 2011
6UQO
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BU of 6uqo by Molmil
ClpA/ClpP Engaged State bound to RepA-GFP
Descriptor: ADENOSINE-5'-DIPHOSPHATE, ATP-dependent Clp endopeptidase proteolytic subunit ClpP, ATP-dependent Clp protease ATP-binding subunit ClpA, ...
Authors:Lopez, K.L, Rizo, A.N, Southworth, D.R.
Deposit date:2019-10-21
Release date:2020-04-22
Last modified:2024-12-25
Method:ELECTRON MICROSCOPY (3.1 Å)
Cite:Conformational plasticity of the ClpAP AAA+ protease couples protein unfolding and proteolysis.
Nat.Struct.Mol.Biol., 27, 2020
3M6A
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BU of 3m6a by Molmil
Crystal structure of Bacillus subtilis Lon C-terminal domain
Descriptor: ADENOSINE-5'-DIPHOSPHATE, ATP-dependent protease La 1
Authors:Duman, R.E, Lowe, J.Y.
Deposit date:2010-03-15
Release date:2010-06-30
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (3.4 Å)
Cite:Crystal Structures of Bacillus subtilis Lon Protease.
J.Mol.Biol., 401, 2010
5XMK
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BU of 5xmk by Molmil
Cryo-EM structure of the ATP-bound Vps4 mutant-E233Q complex with Vta1 (masked)
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, Vacuolar protein sorting-associated protein 4, Vacuolar protein sorting-associated protein VTA1
Authors:Sun, S, Li, L, Yang, F, Wang, X, Fan, F, Li, X, Wang, H, Sui, S.
Deposit date:2017-05-15
Release date:2017-08-09
Last modified:2024-03-27
Method:ELECTRON MICROSCOPY (4.18 Å)
Cite:Cryo-EM structures of the ATP-bound Vps4(E233Q) hexamer and its complex with Vta1 at near-atomic resolution
Nat Commun, 8, 2017
6OG1
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BU of 6og1 by Molmil
Focus classification structure of the hyperactive ClpB mutant K476C, bound to casein, pre-state
Descriptor: ADENOSINE-5'-DIPHOSPHATE, Hyperactive disaggregase ClpB, PHOSPHOTHIOPHOSPHORIC ACID-ADENYLATE ESTER
Authors:Rizo, A.R, Lin, J.-B, Gates, S.N, Tse, E, Bart, S.M, Castellano, L.M, Dimaio, F, Shorter, J, Southworth, D.R.
Deposit date:2019-04-01
Release date:2019-06-12
Last modified:2024-03-20
Method:ELECTRON MICROSCOPY (3.3 Å)
Cite:Structural basis for substrate gripping and translocation by the ClpB AAA+ disaggregase.
Nat Commun, 10, 2019
4EIW
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BU of 4eiw by Molmil
Whole cytosolic region of atp-dependent metalloprotease FtsH (G399L)
Descriptor: ADENOSINE-5'-DIPHOSPHATE, ATP-dependent zinc metalloprotease FtsH
Authors:Suno, R, Niwa, H, Tsuchiya, D, Yoshida, M, Morikawa, K.
Deposit date:2012-04-06
Release date:2012-06-06
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (3.9 Å)
Cite:Structure of the whole cytosolic region of ATP-dependent protease FtsH
Mol.Cell, 22, 2006
1HT1
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BU of 1ht1 by Molmil
Nucleotide-Dependent Conformational Changes in a Protease-Associated ATPase HslU
Descriptor: ADENOSINE-5'-DIPHOSPHATE, HEAT SHOCK LOCUS HSLU, HEAT SHOCK LOCUS HSLV
Authors:Wang, J, Song, J.J, Seong, I.S, Franklin, M.C, Kamtekar, S, Eom, S.H, Chung, C.H.
Deposit date:2000-12-27
Release date:2001-11-14
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Nucleotide-dependent conformational changes in a protease-associated ATPase HsIU.
Structure, 9, 2001
6OPC
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BU of 6opc by Molmil
Cdc48 Hexamer in a complex with substrate and Shp1(Ubx Domain)
Descriptor: ADENOSINE-5'-DIPHOSPHATE, BERYLLIUM TRIFLUORIDE ION, Cell division control protein 48, ...
Authors:Cooney, I, Han, H, Stewart, M, Carson, R.H, Hansen, D, Price, J.C, Hill, C.P, Shen, P.S.
Deposit date:2019-04-24
Release date:2019-07-10
Last modified:2024-03-20
Method:ELECTRON MICROSCOPY (3.7 Å)
Cite:Structure of the Cdc48 segregase in the act of unfolding an authentic substrate.
Science, 365, 2019
8G28
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BU of 8g28 by Molmil
Crystal Structure of the C-terminal Fragment of AAA ATPase from Streptococcus pneumoniae.
Descriptor: ATPase, AAA family, CHLORIDE ION
Authors:Minasov, G, Shuvalova, L, Brunzelle, J.S, Kiryukhina, O, Satchell, K.J.F, Center for Structural Biology of Infectious Diseases (CSBID), Center for Structural Genomics of Infectious Diseases (CSGID)
Deposit date:2023-02-03
Release date:2023-02-15
Last modified:2024-10-09
Method:X-RAY DIFFRACTION (1.3 Å)
Cite:Crystal Structure of the C-terminal Fragment of AAA ATPase from Streptococcus pneumoniae.
To Be Published
5XMI
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BU of 5xmi by Molmil
Cryo-EM Structure of the ATP-bound VPS4 mutant-E233Q hexamer (masked)
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, Vacuolar protein sorting-associated protein 4
Authors:Sun, S, Li, L, Yang, F, Wang, X, Fan, F, Li, X, Wang, H, Sui, S.
Deposit date:2017-05-15
Release date:2017-08-09
Last modified:2024-03-27
Method:ELECTRON MICROSCOPY (3.9 Å)
Cite:Cryo-EM structures of the ATP-bound Vps4(E233Q) hexamer and its complex with Vta1 at near-atomic resolution
Nat Commun, 8, 2017

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