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PDB: 19 results

3W7T
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BU of 3w7t by Molmil
Escherichia coli K12 YgjK complexed with mannose
Descriptor: CALCIUM ION, MAGNESIUM ION, Uncharacterized protein YgjK, ...
Authors:Miyazaki, T, Kurakata, Y, Uechi, A, Yoshida, H, Kamitori, S, Sakano, Y, Nishikawa, A, Tonozuka, T.
Deposit date:2013-03-06
Release date:2013-04-03
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Structural insights into the substrate specificity and function of Escherichia coli K12 YgjK, a glucosidase belonging to the glycoside hydrolase family 63.
J.Mol.Biol., 381, 2008
3D3I
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BU of 3d3i by Molmil
Crystal structural of Escherichia coli K12 YgjK, a glucosidase belonging to glycoside hydrolase family 63
Descriptor: CALCIUM ION, GLYCEROL, Uncharacterized protein ygjK
Authors:Kurakata, Y, Uechi, A, Yoshida, H, Kamitori, S, Sakano, Y, Nishikawa, A, Tonozuka, T.
Deposit date:2008-05-12
Release date:2008-06-03
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.78 Å)
Cite:Structural insights into the substrate specificity and function of Escherichia coli K12 YgjK, a glucosidase belonging to the glycoside hydrolase family 63.
J.Mol.Biol., 381, 2008
5CA3
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BU of 5ca3 by Molmil
Crystal structure of the glycosynthase mutant D324N of Escherichia coli GH63 glycosidase in complex with glucose and lactose
Descriptor: CALCIUM ION, Glucosidase YgjK, MAGNESIUM ION, ...
Authors:Miyazaki, T, Tonozuka, T.
Deposit date:2015-06-29
Release date:2016-08-10
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal structure of the enzyme-product complex reveals sugar ring distortion during catalysis by family 63 inverting alpha-glycosidase.
J.Struct.Biol., 2016
3W7S
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BU of 3w7s by Molmil
Escherichia coli K12 YgjK complexed with glucose
Descriptor: CALCIUM ION, Uncharacterized protein YgjK, alpha-D-glucopyranose
Authors:Miyazaki, T, Kurakata, Y, Uechi, A, Yoshida, H, Kamitori, S, Sakano, Y, Nishikawa, A, Tonozuka, T.
Deposit date:2013-03-06
Release date:2013-04-03
Last modified:2020-07-29
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structural insights into the substrate specificity and function of Escherichia coli K12 YgjK, a glucosidase belonging to the glycoside hydrolase family 63.
J.Mol.Biol., 381, 2008
6XUX
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BU of 6xux by Molmil
Crystal structure of Megabody Mb-Nb207-cYgjK_NO
Descriptor: CALCIUM ION, Nanobody,Glucosidase YgjK,Glucosidase YgjK,Nanobody
Authors:Steyaert, J, Uchanski, T, Fischer, B.
Deposit date:2020-01-21
Release date:2021-01-13
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.90000641 Å)
Cite:Megabodies expand the nanobody toolkit for protein structure determination by single-particle cryo-EM.
Nat.Methods, 18, 2021
3W7U
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BU of 3w7u by Molmil
Escherichia coli K12 YgjK complexed with galactose
Descriptor: CALCIUM ION, Uncharacterized protein YgjK, alpha-D-galactopyranose
Authors:Miyazaki, T, Kurakata, Y, Uechi, A, Yoshida, H, Kamitori, S, Sakano, Y, Nishikawa, A, Tonozuka, T.
Deposit date:2013-03-06
Release date:2013-04-03
Last modified:2020-07-29
Method:X-RAY DIFFRACTION (1.99 Å)
Cite:Structural insights into the substrate specificity and function of Escherichia coli K12 YgjK, a glucosidase belonging to the glycoside hydrolase family 63.
J.Mol.Biol., 381, 2008
3W7W
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BU of 3w7w by Molmil
Crystal structure of E. coli YgjK E727A complexed with 2-O-alpha-D-glucopyranosyl-alpha-D-galactopyranose
Descriptor: CALCIUM ION, MAGNESIUM ION, Uncharacterized protein YgjK, ...
Authors:Miyazaki, T, Ichikawa, M, Yokoi, G, Kitaoka, M, Mori, H, Kitano, Y, Nishikawa, A, Tonozuka, T.
Deposit date:2013-03-08
Release date:2013-07-17
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structure of a bacterial glycoside hydrolase family 63 enzyme in complex with its glycosynthase product, and insights into the substrate specificity.
Febs J., 280, 2013
5GW7
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BU of 5gw7 by Molmil
Crystal structure of the glycosynthase mutant E727A of Escherichia coli GH63 glycosidase in complex with glucose and lactose
Descriptor: CALCIUM ION, Glucosidase YgjK, MAGNESIUM ION, ...
Authors:Miyazaki, T, Tonozuka, T.
Deposit date:2016-09-08
Release date:2016-10-12
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Crystal structure of the enzyme-product complex reveals sugar ring distortion during catalysis by family 63 inverting alpha-glycosidase
J.Struct.Biol., 196, 2016
7Q1U
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BU of 7q1u by Molmil
Structure of Hedgehog acyltransferase (HHAT) in complex with megabody 177 bound to non-hydrolysable palmitoyl-CoA (Composite Map)
Descriptor: CHOLESTEROL, MAGNESIUM ION, Megabody 177, ...
Authors:Coupland, C, Carrique, L, Siebold, C.
Deposit date:2021-10-21
Release date:2022-06-08
Method:ELECTRON MICROSCOPY (2.7 Å)
Cite:Structure, mechanism, and inhibition of Hedgehog acyltransferase.
Mol.Cell, 81, 2021
3W7X
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BU of 3w7x by Molmil
Crystal structure of E. coli YgjK D324N complexed with melibiose
Descriptor: CALCIUM ION, Uncharacterized protein YgjK, alpha-D-galactopyranose-(1-6)-alpha-D-glucopyranose
Authors:Miyazaki, T, Ichikawa, M, Yokoi, G, Kitaoka, M, Mori, H, Kitano, Y, Nishikawa, A, Tonozuka, T.
Deposit date:2013-03-08
Release date:2013-07-17
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Structure of a bacterial glycoside hydrolase family 63 enzyme in complex with its glycosynthase product, and insights into the substrate specificity.
Febs J., 280, 2013
8AFE
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BU of 8afe by Molmil
Cryo-EM structure of crescentin filaments (stutter mutant, C1 symmetry and small box)
Descriptor: Crescentin, Crescentin-specific megabody MB13
Authors:Liu, Y, Lowe, J.
Deposit date:2022-07-17
Release date:2023-08-16
Last modified:2024-02-21
Method:ELECTRON MICROSCOPY (3.3 Å)
Cite:Filament structure and subcellular organization of the bacterial intermediate filament-like protein crescentin.
Proc.Natl.Acad.Sci.USA, 121, 2024
7PQQ
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BU of 7pqq by Molmil
Structure of thermostabilised human NTCP in complex with Megabody 91
Descriptor: Anti-RON nanobody,Megabody 91,Glucosidase YgjK, Sodium/bile acid cotransporter
Authors:Goutam, K, Reyes, N.
Deposit date:2021-09-18
Release date:2022-05-18
Last modified:2022-07-06
Method:ELECTRON MICROSCOPY (3.3 Å)
Cite:Structural basis of sodium-dependent bile salt uptake into the liver.
Nature, 606, 2022
7Q6Z
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BU of 7q6z by Molmil
Structure of Hedgehog acyltransferase (HHAT) in complex with megabody 177 bound to IMP-1575
Descriptor: 2-(2-methylpropylamino)-1-[(4R)-4-(6-methylpyridin-2-yl)-6,7-dihydro-4H-thieno[3,2-c]pyridin-5-yl]ethanone, CHOLESTEROL, Megabody 177, ...
Authors:Coupland, C, Carrique, L, Siebold, C.
Deposit date:2021-11-09
Release date:2022-01-26
Method:ELECTRON MICROSCOPY (3.59 Å)
Cite:Structure, mechanism, and inhibition of Hedgehog acyltransferase.
Mol.Cell, 81, 2021
8AFH
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BU of 8afh by Molmil
Cryo-EM structure of crescentin filaments (stutter mutant, C2, symmetry and small box)
Descriptor: Crescentin, Crescentus-specific megabody MB13
Authors:Liu, Y, Lowe, J.
Deposit date:2022-07-18
Release date:2023-08-16
Last modified:2024-02-21
Method:ELECTRON MICROSCOPY (3.9 Å)
Cite:Filament structure and subcellular organization of the bacterial intermediate filament-like protein crescentin.
Proc.Natl.Acad.Sci.USA, 121, 2024
8AHL
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BU of 8ahl by Molmil
Cryo-EM structure of crescentin filaments (stutter mutant, C1 symmetry and large box)
Descriptor: Crescentin, Crescentin-specific megabody MB13
Authors:Liu, Y, Lowe, J.
Deposit date:2022-07-22
Release date:2023-08-16
Last modified:2024-02-21
Method:ELECTRON MICROSCOPY (4.1 Å)
Cite:Filament structure and subcellular organization of the bacterial intermediate filament-like protein crescentin.
Proc.Natl.Acad.Sci.USA, 121, 2024
8AFL
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BU of 8afl by Molmil
Cryo-EM structure of crescentin filaments (wildtype, C1 symmetry and small box)
Descriptor: Crescentin, Crescentin-specific megabody MB13
Authors:Liu, Y, Lowe, J.
Deposit date:2022-07-18
Release date:2023-08-16
Last modified:2024-02-21
Method:ELECTRON MICROSCOPY (4.4 Å)
Cite:Filament structure and subcellular organization of the bacterial intermediate filament-like protein crescentin.
Proc.Natl.Acad.Sci.USA, 121, 2024
8AFM
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BU of 8afm by Molmil
Cryo-EM structure of crescentin filaments (wildtype, C2 symmetry and small box)
Descriptor: Crescentin, Crescentin-specific megabody MB13
Authors:Liu, Y, Lowe, J.
Deposit date:2022-07-18
Release date:2023-08-16
Last modified:2024-02-21
Method:ELECTRON MICROSCOPY (4.8 Å)
Cite:Filament structure and subcellular organization of the bacterial intermediate filament-like protein crescentin.
Proc.Natl.Acad.Sci.USA, 121, 2024
8AIA
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BU of 8aia by Molmil
Cryo-EM structure of crescentin filaments (wildtype, C1 symmetry and large box)
Descriptor: Crescentin, Crescentin-specific megabody MB13
Authors:Liu, Y, Lowe, J.
Deposit date:2022-07-26
Release date:2023-08-16
Last modified:2024-02-21
Method:ELECTRON MICROSCOPY (5.1 Å)
Cite:Filament structure and subcellular organization of the bacterial intermediate filament-like protein crescentin.
Proc.Natl.Acad.Sci.USA, 121, 2024
8AIX
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BU of 8aix by Molmil
Cryo-EM structure of crescentin filaments (wildtype, C2 symmetry and large box)
Descriptor: Crescentin, Crescentin-specific megabody MB13
Authors:Liu, Y, Lowe, J.
Deposit date:2022-07-27
Release date:2023-08-16
Last modified:2024-02-21
Method:ELECTRON MICROSCOPY (5.8 Å)
Cite:Filament structure and subcellular organization of the bacterial intermediate filament-like protein crescentin.
Proc.Natl.Acad.Sci.USA, 121, 2024

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PDB entries from 2024-07-31

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