PDB: 46169 resultsInfo pagesStatus searchChemie searchBIRD

---

4GX9	Crystal structure of a DNA polymerase III alpha-epsilon chimera Descriptor: DNA polymerase III subunit epsilon,DNA polymerase III subunit alpha Authors: Li, N, Horan, N, Xu, Z.-Q, Jacques, D, Dixon, N.E, Oakley, A.J. Deposit date: 2012-09-04 Release date: 2013-04-03 Last modified: 2023-11-08 Method: X-RAY DIFFRACTION (2.15 Å) Cite: Proofreading exonuclease on a tether: the complex between the E. coli DNA polymerase III subunits alpha, {varepsilon}, theta and beta reveals a highly flexible arrangement of the proofreading domain Nucleic Acids Res., 41, 2013
4J9Q	Human DNA polymerase eta-DNA postinsertion binary complex with TG mispair Descriptor: DNA (5'-D(*TP*AP*GP*CP*GP*TP*CP*AP*TP*G)-3'), DNA (5'-D(*TP*C*AP*TP*TP*AP*TP*GP*AP*CP*GP*CP*T)-3'), DNA polymerase eta, ... Authors: Zhao, Y, Gregory, M, Biertumpfel, C, Hua, Y, Hanaoka, F, Yang, W. Deposit date: 2013-02-16 Release date: 2013-05-01 Last modified: 2023-09-20 Method: X-RAY DIFFRACTION (1.96 Å) Cite: Mechanism of somatic hypermutation at the WA motif by human DNA polymerase eta. Proc.Natl.Acad.Sci.USA, 110, 2013
5M2L	Structure of DNA tetrameric AGCGA-quadruplex adopted by 15-mer d(GCGAGGGAGCGAGGG), VK34, oligonucleotide found in regulatory region of the PLEKHG3 human gene Descriptor: DNA (5'-D(*GP*CP*GP*AP*GP*GP*GP*AP*GP*CP*GP*AP*GP*GP*G)-3') Authors: Kocman, V, Plavec, J. Deposit date: 2016-10-13 Release date: 2017-05-31 Last modified: 2024-05-15 Method: SOLUTION NMR Cite: Tetrahelical structural family adopted by AGCGA-rich regulatory DNA regions. Nat Commun, 8, 2017
8OLX	MutSbeta bound to (CAG)2 DNA (canonical form) Descriptor: ADENOSINE-5'-DIPHOSPHATE, DNA (25-MER), DNA mismatch repair protein Msh2, ... Authors: Lee, J.-H, Thomsen, M, Daub, H, Steinbacher, S, Sztyler, A, Thieulin-Pardo, G, Neudegger, T, Plotnikov, N, Iyer, R.R, Wilkinson, H, Monteagudo, E, Felsenfeld, D.P, Haque, T, Finley, M, Dominguez, C, Vogt, T.F, Prasad, B.C. Deposit date: 2023-03-30 Release date: 2023-05-24 Last modified: 2024-07-24 Method: ELECTRON MICROSCOPY (3.1 Å) Cite: MutSbeta bound to (CAG)2 DNA (canonical form) To Be Published
1OMH	Conjugative Relaxase TrwC in complex with OriT Dna. Metal-free structure. Descriptor: DNA OLIGONUCLEOTIDE, SULFATE ION, trwC protein Authors: Guasch, A, Lucas, M, Moncalian, G, Cabezas, M, Perez-Luque, R, Gomis-Ruth, F.X, de la Cruz, F, Coll, M. Deposit date: 2003-02-25 Release date: 2003-11-25 Last modified: 2017-10-11 Method: X-RAY DIFFRACTION (1.95 Å) Cite: Recognition and processing of the origin of transfer DNA by conjugative relaxase TrwC. Nat.Struct.Biol., 10, 2003
3FLO	Crystal structure of the carboxyl-terminal domain of yeast DNA polymerase alpha in complex with its B subunit Descriptor: DNA polymerase alpha catalytic subunit A, DNA polymerase alpha subunit B, SULFATE ION, ... Authors: Klinge, S.N, Pellegrini, L. Deposit date: 2008-12-19 Release date: 2009-06-09 Last modified: 2024-03-20 Method: X-RAY DIFFRACTION (2.5 Å) Cite: 3D architecture of DNA Pol alpha reveals the functional core of multi-subunit replicative polymerases Embo J., 28, 2009
209D	Structural, physical and biological characteristics of RNA:DNA binding agent N8-actinomycin D Descriptor: DNA (5'-D(*GP*AP*AP*GP*CP*TP*TP*C)-3'), N8-ACTINOMYCIN D Authors: Shinomiya, M, Chu, W, Carlson, R.G, Weaver, R.F, Takusagawa, F. Deposit date: 1995-05-01 Release date: 1995-10-15 Last modified: 2024-07-10 Method: X-RAY DIFFRACTION (3 Å) Cite: Structural, Physical, and Biological Characteristics of RNA.DNA Binding Agent N8-Actinomycin D. Biochemistry, 34, 1995
282D	A CONTINOUS TRANSITION FROM A-DNA TO B-DNA IN THE 1:1 COMPLEX BETWEEN NOGALAMYCIN AND THE HEXAMER DCCCGGG Descriptor: DNA (5'-D(*CP*CP*CP*GP*GP*G)-3'), NOGALAMYCIN Authors: Cruse, W, Saludjian, P, Leroux, Y, Leger, Y, El Manouni, D, Prange, T. Deposit date: 1996-08-26 Release date: 1996-10-23 Last modified: 2024-04-03 Method: X-RAY DIFFRACTION (2.4 Å) Cite: A continuous transition from A-DNA to B-DNA in the 1:1 complex between nogalamycin and the hexamer dCCCGGG. J.Biol.Chem., 271, 1996
1KHC	Crystal Structure of the PWWP Domain of Mammalian DNA Methyltransferase Dnmt3b Descriptor: DNA cytosine-5 methyltransferase 3B2, UNKNOWN ATOM OR ION Authors: Qiu, C, Sawada, K, Zhang, X, Cheng, X. Deposit date: 2001-11-29 Release date: 2002-02-27 Last modified: 2024-02-14 Method: X-RAY DIFFRACTION (1.8 Å) Cite: The PWWP domain of mammalian DNA methyltransferase Dnmt3b defines a new family of DNA-binding folds. Nat.Struct.Biol., 9, 2002
335D	THE CRYSTAL STRUCTURE OF THE DNA DECAMER D(GGCAATTGCG) CONTAINS BOTH MAJOR AND MINOR GROOVE BINDING G.(G.C) TRIPLETS Descriptor: DNA (5'-D(*GP*GP*CP*AP*AP*TP*TP*GP*CP*G)-3'), MAGNESIUM ION Authors: Nunn, C.M, Neidle, S. Deposit date: 1997-06-05 Release date: 1998-08-10 Last modified: 2024-04-03 Method: X-RAY DIFFRACTION (2.4 Å) Cite: Structure of the DNA decamer d(GGCAATTGCG) contains both major- and minor-groove binding G.(G.C) base triplets. Acta Crystallogr.,Sect.D, 54, 1998
213D	CRYSTAL STRUCTURE OF THE A-DNA DECAMER D(CCIGGCCM5CGG) AT 1.6 ANGSTROMS SHOWING THE UNEXPECTED WOBBLE I.M5C BASE PAIR Descriptor: DNA (5'-D(*CP*CP*IP*GP*GP*CP*CP*(5CM)P*GP*G)-3') Authors: Ramakrishnan, B, Sundaralingam, M. Deposit date: 1995-06-28 Release date: 1996-01-31 Last modified: 2024-02-14 Method: X-RAY DIFFRACTION (1.6 Å) Cite: Crystal structure of the A-DNA decamer d(CCIGGCCm5CGG) at 1.6 A showing the unexpected wobble I.m5C base pair. Biophys.J., 69, 1995
2C56	A comparative study of uracil DNA glycosylases from human and herpes simplex virus type 1 Descriptor: URACIL DNA GLYCOSYLASE, beta-D-fructofuranose-(2-1)-alpha-D-glucopyranose Authors: Krusong, K, Carpenter, E.P, Bellamy, S.R.W, Savva, R, Baldwin, G.S. Deposit date: 2005-10-26 Release date: 2005-11-28 Last modified: 2023-12-13 Method: X-RAY DIFFRACTION (2.1 Å) Cite: A Comparative Study of Uracil-DNA Glycosylases from Human and Herpes Simplex Virus Type 1. J.Biol.Chem., 281, 2006
1J8L	Molecular and Crystal Structure of D(CGCAAATTMO4CGCG): the Watson-Crick Type N4-Methoxycytidine/Adenosine Base Pair in B-DNA Descriptor: DNA (5'-D(*CP*GP*CP*AP*AP*AP*TP*TP*(C45)P*GP*CP*G)-3'), MAGNESIUM ION Authors: Hossain, M.T, Sunami, T, Tsunoda, M, Hikima, T, Chatake, T, Ueno, Y, Matsuda, A, Takenaka, A. Deposit date: 2001-05-22 Release date: 2001-09-28 Last modified: 2023-08-16 Method: X-RAY DIFFRACTION (1.6 Å) Cite: Crystallographic studies on damaged DNAs IV. N(4)-methoxycytosine shows a second face for Watson-Crick base-pairing, leading to purine transition mutagenesis. Nucleic Acids Res., 29, 2001
2BCV	DNA polymerase lambda in complex with Dttp and a DNA duplex containing an unpaired Dtmp Descriptor: 5'-D(*CP*AP*GP*TP*AP*(O2C))-3', 5'-D(*CP*GP*GP*CP*AP*GP*TP*TP*AP*CP*TP*G)-3', 5'-D(P*GP*CP*CP*G)-3', ... Authors: Garcia-Diaz, M, Bebenek, K, Krahn, J.M, Pedersen, L.C, Kunkel, T.A. Deposit date: 2005-10-19 Release date: 2006-03-07 Last modified: 2023-08-23 Method: X-RAY DIFFRACTION (2 Å) Cite: Structural analysis of strand misalignment during DNA synthesis by a human DNA polymerase Cell(Cambridge,Mass.), 124, 2006
1WNS	Crystal structure of family B DNA polymerase from hyperthermophilic archaeon pyrococcus kodakaraensis KOD1 Descriptor: DNA POLYMERASE Authors: Hashimoto, H, Inoue, T, Kai, Y, Fujiwara, S, Takagi, M, Nishioka, M, Imanaka, T. Deposit date: 2004-08-09 Release date: 2004-08-17 Last modified: 2017-08-16 Method: X-RAY DIFFRACTION (3 Å) Cite: Crystal Structure of DNA Polymerase from Hyperthermophilic Archaeon Pyrococcus Kodakaraensis Kod1 J.Mol.Biol., 306, 2001
6OZW	Crystal structure of the 65-kilodalton amino-terminal fragment of DNA topoisomerase I from Streptococcus mutans Descriptor: DNA topoisomerase 1, FORMIC ACID, MAGNESIUM ION Authors: Jones, J.A, Hevener, K.E. Deposit date: 2019-05-16 Release date: 2019-06-26 Last modified: 2023-10-11 Method: X-RAY DIFFRACTION (2.063 Å) Cite: Crystal structure of the 65-kilodalton amino-terminal fragment of DNA topoisomerase I from the gram-positive model organism Streptococcus mutans. Biochem.Biophys.Res.Commun., 516, 2019
2C53	A comparative study of uracil DNA glycosylases from human and herpes simplex virus type 1 Descriptor: 2'-DEOXYURIDINE, GLYCEROL, URACIL DNA GLYCOSYLASE Authors: Krusong, K, Carpenter, E.P, Bellmy, S.R.W, Savva, R, Baldwin, G.S. Deposit date: 2005-10-25 Release date: 2005-11-28 Last modified: 2024-05-08 Method: X-RAY DIFFRACTION (1.8 Å) Cite: A Comparative Study of Uracil-DNA Glycosylases from Human and Herpes Simplex Virus Type 1. J.Biol.Chem., 281, 2006
4ZC3	DNA binding domain of small terminase SF6 phage Descriptor: Terminase small subunit Authors: Antson, A.A, Chechik, M, Jenkins, H.T, Greive, S.J. Deposit date: 2015-04-15 Release date: 2015-12-30 Last modified: 2024-05-08 Method: X-RAY DIFFRACTION (1.4 Å) Cite: DNA recognition for virus assembly through multiple sequence-independent interactions with a helix-turn-helix motif. Nucleic Acids Res., 44, 2016
1DPI	STRUCTURE OF LARGE FRAGMENT OF ESCHERICHIA COLI DNA POLYMERASE I COMPLEXED WITH D/TMP Descriptor: DNA POLYMERASE I KLENOW FRAGMENT, ZINC ION Authors: Beese, L, Ollis, D, Steitz, T. Deposit date: 1987-08-11 Release date: 1987-10-16 Last modified: 2024-02-07 Method: X-RAY DIFFRACTION (2.8 Å) Cite: Structure of large fragment of Escherichia coli DNA polymerase I complexed with dTMP. Nature, 313, 1985
1ZQV	DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7), 31-KD DOMAIN; SOAKED IN THE PRESENCE OF CACL2 (150 MILLIMOLAR) Descriptor: CALCIUM ION, DNA POLYMERASE BETA Authors: Pelletier, H, Sawaya, M.R. Deposit date: 1996-04-19 Release date: 1996-11-15 Last modified: 2024-05-22 Method: X-RAY DIFFRACTION (2.7 Å) Cite: Characterization of the metal ion binding helix-hairpin-helix motifs in human DNA polymerase beta by X-ray structural analysis. Biochemistry, 35, 1996
6G3B	AvaII restriction endonuclease in complex with an RNA/DNA hybrid Descriptor: DNA (5'-D(*CP*CP*AP*TP*GP*GP*TP*CP*CP*TP*A)-3'), RNA (5'-R(P*GP*UP*AP*GP*GP*AP*CP*CP*AP*UP*G)-3'), Type II site-specific deoxyribonuclease Authors: Kisiala, M, Kowalska, M, Czapinska, H, Bochtler, M. Deposit date: 2018-03-24 Release date: 2019-04-10 Last modified: 2024-05-08 Method: X-RAY DIFFRACTION (1.8 Å) Cite: Restriction endonucleases that cleave RNA/DNA heteroduplexes bind dsDNA in A-like conformation Nucleic Acids Res., 2020
1AO9	INTRAMOLECULAR DNA DUPLEX CONTAINING A NON-NUCLEOTIDE LINKER (GAGAGA-X-TCTCCT), NMR, 12 STRUCTURES Descriptor: DNA (5'-D(*GP*AP*GP*AP*GP*AP*DOP*TP*CP*TP*CP*TP*C)-3') Authors: Bartley, J.P. Deposit date: 1997-07-22 Release date: 1998-01-28 Last modified: 2024-05-22 Method: SOLUTION NMR Cite: Solution conformation of an intramolecular DNA triplex containing a nonnucleotide linker: comparison with the DNA duplex. Biochemistry, 36, 1997
1AT4	INTRAMOLECULAR DNA TRIPLEX CONTAINING A NON-NUCLEOTIDE LINKER (GAGAGA-X-TCTCCT-X-CTCTCT), NMR, 7 STRUCTURES Descriptor: DNA (5'-D(*GP*AP*GP*AP*GP*AP*DOP*TP*CP*TP*CP*TP*CP*DOP*CP*TP*CP*TP*CP*T)-3') Authors: Bartley, J.P. Deposit date: 1997-08-18 Release date: 1998-02-18 Last modified: 2024-05-22 Method: SOLUTION NMR Cite: Solution conformation of an intramolecular DNA triplex containing a nonnucleotide linker: comparison with the DNA duplex. Biochemistry, 36, 1997
2BCU	DNA polymerase lambda in complex with a DNA duplex containing an unpaired Damp and a T:T mismatch Descriptor: 5'-D(*CP*AP*GP*TP*TP*CP*G)-3', 5'-D(*CP*GP*GP*CP*CP*GP*AP*TP*AP*CP*TP*G)-3', 5'-D(P*GP*CP*CP*G)-3', ... Authors: Garcia-Diaz, M, Bebenek, K, Krahn, J.M, Pedersen, L.C, Kunkel, T.A. Deposit date: 2005-10-19 Release date: 2006-03-07 Last modified: 2023-08-23 Method: X-RAY DIFFRACTION (2.2 Å) Cite: Structural analysis of strand misalignment during DNA synthesis by a human DNA polymerase Cell(Cambridge,Mass.), 124, 2006
2BCS	DNA polymerase lambda in complex with a DNA duplex containing an unpaired Dcmp Descriptor: 5'-D(*CP*AP*GP*TP*AP*CP*G)-3', 5'-D(*CP*GP*GP*CP*CP*GP*CP*TP*AP*CP*TP*G)-3', 5'-D(*GP*CP*CP*G)-3', ... Authors: Garcia-Diaz, M, Bebenek, K, Krahn, J.M, Pedersen, L.C, Kunkel, T.A. Deposit date: 2005-10-19 Release date: 2006-03-07 Last modified: 2023-08-23 Method: X-RAY DIFFRACTION (2.2 Å) Cite: Structural analysis of strand misalignment during DNA synthesis by a human DNA polymerase Cell(Cambridge,Mass.), 124, 2006

<84858687888990919293949596979899>