Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

5IBG
DownloadVisualize
BU of 5ibg by Molmil
Crystal structure Mycobacterium tuberculosis CYP121 in complex with inhibitor fragment 25b
Descriptor: 3'-amino-5-[5-amino-3-(4-hydroxyphenyl)-1H-pyrazol-4-yl][1,1'-biphenyl]-2-ol, Cytochrome P450 121 CYP121, PROTOPORPHYRIN IX CONTAINING FE, ...
Authors:Levy, C.
Deposit date:2016-02-22
Release date:2016-04-06
Last modified:2024-05-01
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Fragment-Based Approaches to the Development of Mycobacterium tuberculosis CYP121 Inhibitors.
J.Med.Chem., 59, 2016
5I19
DownloadVisualize
BU of 5i19 by Molmil
CRYSTAL STRUCTURE OF HUMAN GERMLINE ANTIBODY IGHV3-23/IGKV1-39
Descriptor: FAB HEAVY CHAIN, FAB LIGHT CHAIN
Authors:Teplyakov, A, Obmolova, G, Malia, T, Luo, J, Gilliland, G.
Deposit date:2016-02-05
Release date:2016-06-08
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Structural diversity in a human antibody germline library.
Mabs, 8, 2016
5IF1
DownloadVisualize
BU of 5if1 by Molmil
Crystal structure apo CDK2/cyclin A
Descriptor: Cyclin-A2, Cyclin-dependent kinase 2
Authors:Ayaz, P, Andres, D, Kwiatkowski, D.A, Kolbe, C, Lienau, P, Siemeister, G, Luecking, U, Stegmann, C.M.
Deposit date:2016-02-25
Release date:2016-04-27
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (2.61 Å)
Cite:Conformational Adaption May Explain the Slow Dissociation Kinetics of Roniciclib (BAY 1000394), a Type I CDK Inhibitor with Kinetic Selectivity for CDK2 and CDK9.
Acs Chem.Biol., 11, 2016
5I1J
DownloadVisualize
BU of 5i1j by Molmil
CRYSTAL STRUCTURE OF HUMAN GERMLINE ANTIBODY IGHV5-51/IGKV3-11
Descriptor: FAB HEAVY CHAIN, FAB LIGHT CHAIN, GLYCEROL
Authors:Teplyakov, A, Obmolova, G, Malia, T, Luo, J, Gilliland, G.
Deposit date:2016-02-05
Release date:2016-06-08
Last modified:2016-08-03
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Structural diversity in a human antibody germline library.
Mabs, 8, 2016
5KC7
DownloadVisualize
BU of 5kc7 by Molmil
Crystal structure of Cbln1 (Val55-Gly58 deletion mutant)
Descriptor: Cerebellin-1
Authors:Elegheert, J, Aricescu, A.R.
Deposit date:2016-06-05
Release date:2016-07-27
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (7.035 Å)
Cite:Structural basis for integration of GluD receptors within synaptic organizer complexes.
Science, 353, 2016
5KJ5
DownloadVisualize
BU of 5kj5 by Molmil
Crystal structure of 2-aminomuconate 6-semialdehyde dehydrogenase N169D in complex with NAD+
Descriptor: 2-aminomuconate 6-semialdehyde dehydrogenase, NICOTINAMIDE-ADENINE-DINUCLEOTIDE
Authors:Yang, Y, Davis, I, Ha, U, Wang, Y, Shin, I, Liu, A.
Deposit date:2016-06-17
Release date:2016-11-09
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (2.113 Å)
Cite:A Pitcher-and-Catcher Mechanism Drives Endogenous Substrate Isomerization by a Dehydrogenase in Kynurenine Metabolism.
J.Biol.Chem., 291, 2016
5KPY
DownloadVisualize
BU of 5kpy by Molmil
Structure of a 5-hydroxytryptophan aptamer
Descriptor: 5-hydroxy-L-tryptophan, 5-hydroxytryptophan RNA aptamer, IRIDIUM HEXAMMINE ION, ...
Authors:Batey, R.T, Porter, E, Merck, M.
Deposit date:2016-07-05
Release date:2017-01-11
Last modified:2024-03-06
Method:X-RAY DIFFRACTION (2 Å)
Cite:Recurrent RNA motifs as scaffolds for genetically encodable small-molecule biosensors.
Nat. Chem. Biol., 13, 2017
5KKF
DownloadVisualize
BU of 5kkf by Molmil
Crystal structure of TEM1 beta-lactamase mutant I263L
Descriptor: Beta-lactamase TEM
Authors:Roose, B.W, Dmochowski, I.J.
Deposit date:2016-06-21
Release date:2017-06-28
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (1.82 Å)
Cite:A Structural Basis for129Xe Hyper-CEST Signal in TEM-1 beta-Lactamase.
Chemphyschem, 2018
5KLI
DownloadVisualize
BU of 5kli by Molmil
Rhodobacter sphaeroides bc1 with stigmatellin and antimycin
Descriptor: (1R)-2-{[(R)-(2-AMINOETHOXY)(HYDROXY)PHOSPHORYL]OXY}-1-[(DODECANOYLOXY)METHYL]ETHYL (9Z)-OCTADEC-9-ENOATE, (2R,3S,6S,7R,8R)-3-{[3-(FORMYLAMINO)-2-HYDROXYBENZOYL]AMINO}-8-HEXYL-2,6-DIMETHYL-4,9-DIOXO-1,5-DIOXONAN-7-YL (2S)-2-METHYLBUTANOATE, Cytochrome b, ...
Authors:Xia, D, Esser, L, Zhou, F, Tang, W.K, Yu, C.A.
Deposit date:2016-06-24
Release date:2016-10-12
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (2.996 Å)
Cite:Hydrogen Bonding to the Substrate Is Not Required for Rieske Iron-Sulfur Protein Docking to the Quinol Oxidation Site of Complex III.
J.Biol.Chem., 291, 2016
5KOW
DownloadVisualize
BU of 5kow by Molmil
Structure of rifampicin monooxygenase
Descriptor: ACETATE ION, FLAVIN-ADENINE DINUCLEOTIDE, Pentachlorophenol 4-monooxygenase
Authors:Tanner, J.J, Liu, L.-K.
Deposit date:2016-07-01
Release date:2016-09-07
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:The Structure of the Antibiotic Deactivating, N-hydroxylating Rifampicin Monooxygenase.
J.Biol.Chem., 291, 2016
5KIR
DownloadVisualize
BU of 5kir by Molmil
The Structure of Vioxx Bound to Human COX-2
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, AMMONIUM ION, GLYCEROL, ...
Authors:Orlando, B.J, Malkowski, M.G.
Deposit date:2016-06-16
Release date:2016-09-28
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (2.697 Å)
Cite:Crystal structure of rofecoxib bound to human cyclooxygenase-2.
Acta Crystallogr.,Sect.F, 72, 2016
5KUT
DownloadVisualize
BU of 5kut by Molmil
hMiro2 C-terminal GTPase domain, GDP-bound
Descriptor: GUANOSINE-5'-DIPHOSPHATE, MAGNESIUM ION, Mitochondrial Rho GTPase 2
Authors:Klosowiak, J.L, Focia, P.J, Rice, S.E, Freymann, D.M.
Deposit date:2016-07-13
Release date:2016-09-21
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (1.693 Å)
Cite:Structural insights into Parkin substrate lysine targeting from minimal Miro substrates.
Sci Rep, 6, 2016
5KKC
DownloadVisualize
BU of 5kkc by Molmil
l-lactate dehydrogenase from rabbit muscle with the inhibitor 6DHNAD
Descriptor: L-lactate dehydrogenase A chain, SULFATE ION, [[(2~{R},3~{S},4~{R},5~{R})-5-(5-aminocarbonyl-2~{H}-pyridin-1-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl] [(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl hydrogen phosphate
Authors:Meneely, K.M, Moran, G.R, Lamb, A.L.
Deposit date:2016-06-21
Release date:2016-11-02
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (1.859 Å)
Cite:Ligand binding phenomena that pertain to the metabolic function of renalase.
Arch.Biochem.Biophys., 612, 2016
5KKN
DownloadVisualize
BU of 5kkn by Molmil
Crystal structure of human ACC2 BC domain in complex with ND-646, the primary amide of ND-630
Descriptor: 2-[1-[(2~{R})-2-(2-methoxyphenyl)-2-(oxan-4-yloxy)ethyl]-5-methyl-6-(1,3-oxazol-2-yl)-2,4-bis(oxidanylidene)thieno[2,3-d]pyrimidin-3-yl]-2-methyl-propanamide, Acetyl-CoA carboxylase 2
Authors:Wang, R, Paul, D, Tong, L.
Deposit date:2016-06-22
Release date:2016-07-13
Last modified:2024-03-06
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Acetyl-CoA carboxylase inhibition by ND-630 reduces hepatic steatosis, improves insulin sensitivity, and modulates dyslipidemia in rats.
Proc.Natl.Acad.Sci.USA, 113, 2016
5KNC
DownloadVisualize
BU of 5knc by Molmil
Crystal structure of the 3 ADP-bound V1 complex
Descriptor: ADENOSINE-5'-DIPHOSPHATE, GLYCEROL, MAGNESIUM ION, ...
Authors:Suzuki, K, Mizutani, K, Maruyama, S, Shimono, K, Imai, F.L, Muneyuki, E, Kakinuma, Y, Ishizuka-Katsura, Y, Shirouzu, M, Yokoyama, S, Yamato, I, Murata, T.
Deposit date:2016-06-28
Release date:2016-11-02
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (3.015 Å)
Cite:Crystal structures of the ATP-binding and ADP-release dwells of the V1 rotary motor
Nat Commun, 7, 2016
5IK1
DownloadVisualize
BU of 5ik1 by Molmil
Open state of P450cam after soaking in camphor
Descriptor: CAMPHOR, Camphor 5-monooxygenase, PROTOPORPHYRIN IX CONTAINING FE
Authors:Mahomed, M, Goodin, D.B, Lee, Y.-T.
Deposit date:2016-03-03
Release date:2016-05-04
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (1.53 Å)
Cite:Effector Roles of Putidaredoxin on Cytochrome P450cam Conformational States.
J.Am.Chem.Soc., 138, 2016
5IGN
DownloadVisualize
BU of 5ign by Molmil
Crystal structure of human BRD9 bromodomain in complex with LP99 chemical probe
Descriptor: Bromodomain-containing protein 9, N-[(2R,3S)-2-(4-chlorophenyl)-1-(1,4-dimethyl-2-oxo-1,2-dihydroquinolin-7-yl)-6-oxopiperidin-3-yl]-2-methylpropane-1-sulfonamide
Authors:Tallant, C, Clark, P.G.K, Vieira, L.C.C, Newman, J.A, Krojer, T, Nunez-Alonso, G, Picaud, S, Fedorov, O, Dixon, D.J, von Delft, F, Arrowsmith, C.H, Edwards, A.M, Bountra, C, Brennan, P.E, Knapp, S, Structural Genomics Consortium (SGC)
Deposit date:2016-02-28
Release date:2016-03-30
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Crystal structure of BRD9 bromodomain in complex with LP99 chemical probe
To Be Published
5IJD
DownloadVisualize
BU of 5ijd by Molmil
The crystal structure of mouse TLR4/MD-2/lipid A complex
Descriptor: (R)-((2R,3S,4R,5R,6R)-3-HYDROXY-2-(HYDROXYMETHYL)-5-((R)-3-HYDROXYTETRADECANAMIDO)-6-(PHOSPHONOOXY)TETRAHYDRO-2H-PYRAN-4-YL) 3-HYDROXYTETRADECANOATE, 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ...
Authors:Wang, Y, Su, L, Morin, M.D, Jones, B.T, Whitby, L.R, Surakattula, M, Huang, H, Shi, H, Choi, J.H, Wang, K, Moresco, E.M, Berger, M, Zhan, X, Zhang, H, Boger, D.L, Beutler, B.
Deposit date:2016-03-01
Release date:2016-04-27
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:TLR4/MD-2 activation by a synthetic agonist with no similarity to LPS.
Proc.Natl.Acad.Sci.USA, 113, 2016
5IJT
DownloadVisualize
BU of 5ijt by Molmil
Human Peroxiredoxin 2 Oxidized (SS)
Descriptor: Peroxiredoxin-2, ZINC ION
Authors:Haynes, A.C, Bolduc, J.A, Lowther, W.T.
Deposit date:2016-03-02
Release date:2017-09-06
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (2.148 Å)
Cite:Novel hyperoxidation resistance motifs in 2-Cys peroxiredoxins.
J. Biol. Chem., 293, 2018
5IPK
DownloadVisualize
BU of 5ipk by Molmil
Structure of the R432A variant of Adeno-associated virus type 2 VLP
Descriptor: Capsid protein VP1
Authors:Drouin, L.M, Lins, B, Janssen, M.E, Bennet, A, Chipman, P, McKenna, R, Chen, W, Muzyczka, N, Cardone, G, Baker, T.S, Agbandje-McKenna, M.
Deposit date:2016-03-09
Release date:2016-07-20
Last modified:2024-03-06
Method:ELECTRON MICROSCOPY (3.7 Å)
Cite:Cryo-electron Microscopy Reconstruction and Stability Studies of the Wild Type and the R432A Variant of Adeno-associated Virus Type 2 Reveal that Capsid Structural Stability Is a Major Factor in Genome Packaging.
J.Virol., 90, 2016
5IP0
DownloadVisualize
BU of 5ip0 by Molmil
PHA Binding Protein PhaP (Phasin)
Descriptor: CADMIUM ION, PHA granule-associated protein
Authors:Chen, G.Q, Wang, X.Q, Zhao, H.Y.
Deposit date:2016-03-09
Release date:2017-01-25
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (3 Å)
Cite:Structural Insights on PHA Binding Protein PhaP from Aeromonas hydrophila
Sci Rep, 6, 2016
5ISL
DownloadVisualize
BU of 5isl by Molmil
Linked KDM5A Jmj Domain Bound to the Inhibitor C49 (2-{[(2-{[(E)-2-(dimethylamino)ethenyl](ethyl)amino}-2-oxoethyl)amino]methyl}pyridine-4-carboxylic acid)
Descriptor: 1,2-ETHANEDIOL, 2-{[(2-{[(E)-2-(dimethylamino)ethenyl](ethyl)amino}-2-oxoethyl)amino]methyl}pyridine-4-carboxylic acid, GLYCEROL, ...
Authors:Horton, J.R, Cheng, X.
Deposit date:2016-03-15
Release date:2016-07-27
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (1.694 Å)
Cite:Structural Basis for KDM5A Histone Lysine Demethylase Inhibition by Diverse Compounds.
Cell Chem Biol, 23, 2016
5IRC
DownloadVisualize
BU of 5irc by Molmil
p190A GAP domain complex with RhoA
Descriptor: CHLORIDE ION, GUANOSINE-5'-DIPHOSPHATE, MAGNESIUM ION, ...
Authors:Derewenda, U, Derewenda, Z.
Deposit date:2016-03-12
Release date:2016-08-17
Last modified:2019-12-25
Method:X-RAY DIFFRACTION (1.72 Å)
Cite:Deciphering the Molecular and Functional Basis of RHOGAP Family Proteins: A SYSTEMATIC APPROACH TOWARD SELECTIVE INACTIVATION OF RHO FAMILY PROTEINS.
J.Biol.Chem., 291, 2016
5JZC
DownloadVisualize
BU of 5jzc by Molmil
helical filament
Descriptor: DNA repair protein RAD51 homolog 1
Authors:Short, J, Liu, Y.
Deposit date:2016-05-16
Release date:2016-09-21
Last modified:2024-05-15
Method:ELECTRON MICROSCOPY (4.2 Å)
Cite:High-resolution structure of the presynaptic RAD51 filament on single-stranded DNA by electron cryo-microscopy.
Nucleic Acids Res., 44, 2016
5JXH
DownloadVisualize
BU of 5jxh by Molmil
Structure the proprotein convertase furin in complex with meta-guanidinomethyl-Phac-RVR-Amba at 2.0 Angstrom resolution.
Descriptor: 2UC-ARG-VAL-ARG-00S, CALCIUM ION, CHLORIDE ION, ...
Authors:Dahms, S.O, Arciniega, M, Steinmetzer, T, Huber, R, Than, M.E.
Deposit date:2016-05-13
Release date:2016-10-05
Last modified:2024-07-10
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structure of the unliganded form of the proprotein convertase furin suggests activation by a substrate-induced mechanism.
Proc.Natl.Acad.Sci.USA, 113, 2016

226262

數據於2024-10-16公開中

PDB statisticsPDBj update infoContact PDBjnumon