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9FVD
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BU of 9fvd by Molmil
Cryo-EM structure of single-layered nucleoprotein-RNA helical assembly from Marburg virus, trimeric repeat unit
Descriptor: Nucleoprotein, RNA (5'-R(P*AP*GP*AP*CP*AP*CP*AP*CP*AP*AP*AP*AP*AP*CP*AP*AP*GP*A)-3')
Authors:Zinzula, L, Beck, F, Camasta, M, Bohn, S, Liu, C, Morado, D, Bracher, A, Plitzko, J.M, Baumeister, W.
Deposit date:2024-06-26
Release date:2024-10-09
Method:ELECTRON MICROSCOPY (3.2 Å)
Cite:Cryo-EM structure of single-layered nucleoprotein-RNA complex from Marburg virus
Nat Commun, 2024
9INV
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BU of 9inv by Molmil
Crystal structure of DAPK1 in complex with isoliquiritigenin
Descriptor: 2',4,4'-TRIHYDROXYCHALCONE, Death-associated protein kinase 1, SULFATE ION
Authors:Yokoyama, T.
Deposit date:2024-07-08
Release date:2024-10-09
Method:X-RAY DIFFRACTION (1.61 Å)
Cite:Discovery and optimization of isoliquiritigenin as a death-associated protein kinase 1 inhibitor.
Eur.J.Med.Chem., 279, 2024
9IWS
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BU of 9iws by Molmil
Cryo EM structure of human phosphate channel XPR1 in complex with IP7
Descriptor: (1r,2R,3S,4s,5R,6S)-2,3,4,5,6-pentakis(phosphonooxy)cyclohexyl trihydrogen diphosphate, Solute carrier family 53 member 1
Authors:Lu, Y, Yue, C, Zhang, L, Yao, D, Yu, Y, Cao, Y.
Deposit date:2024-07-25
Release date:2024-10-09
Last modified:2024-11-13
Method:ELECTRON MICROSCOPY (2.86 Å)
Cite:Structural basis for inositol pyrophosphate gating of the phosphate channel XPR1.
Science, 2024
9DER
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BU of 9der by Molmil
Cryo-EM Structures of Full-Length Integrin alphaIIbbeta3 in Native Lipids Complexed with Tirofiban
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, CALCIUM ION, Integrin alpha-IIb, ...
Authors:Adair, B, Xiong, J.P, Yeager, M, Arnaout, M.A.
Deposit date:2024-08-29
Release date:2024-10-16
Last modified:2024-11-13
Method:ELECTRON MICROSCOPY (3.9 Å)
Cite:Platelet integrin alpha IIb beta 3 plays a key role in a venous thrombogenesis mouse model.
Nat Commun, 15, 2024
9FO3
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BU of 9fo3 by Molmil
Structure of a gp140 SpyTag-SpyCatcher mi3 nanoparticle including mi3 density only.
Descriptor: CAP255 gp140 SpyTag-SpyCatcher mi3,2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase,2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase
Authors:Woodward, J.D, Malebo, K, Chapman, R.
Deposit date:2024-06-11
Release date:2024-10-09
Last modified:2024-11-13
Method:ELECTRON MICROSCOPY (5.3 Å)
Cite:Development of a Two-Component Nanoparticle Vaccine Displaying an HIV-1 Envelope Glycoprotein that Elicits Tier 2 Neutralising Antibodies.
Vaccines (Basel), 12, 2024
6VRP
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BU of 6vrp by Molmil
Reverse Transcriptase Diabody with R83T Mutation
Descriptor: 1,2-ETHANEDIOL, SULFATE ION, Single-chain Fv
Authors:Chesterman, C, Arnold, E.
Deposit date:2020-02-08
Release date:2021-02-10
Last modified:2024-10-23
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Co-crystallization with diabodies: A case study for the introduction of synthetic symmetry.
Structure, 29, 2021
9IU1
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BU of 9iu1 by Molmil
Structure of SARS-CoV-2 JN.1 spike RBD in complex with ACE2 (up state)
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Processed angiotensin-converting enzyme 2, ...
Authors:Yajima, H, Anraku, Y, Kita, S, Kimura, K, Maenaka, K, Hashiguchi, T.
Deposit date:2024-07-20
Release date:2024-10-09
Last modified:2024-11-13
Method:ELECTRON MICROSCOPY (4.3 Å)
Cite:Structural basis for receptor-binding domain mobility of the spike in SARS-CoV-2 BA.2.86 and JN.1.
Nat Commun, 15, 2024
6VL3
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BU of 6vl3 by Molmil
The crystal structure of the 2009 H1N1 PA endonuclease mutant I38T in complex with SJ000986436
Descriptor: 5-hydroxy-N-[2-(4-hydroxy-3-methoxyphenyl)ethyl]-6-oxo-2-[2-(trifluoromethyl)phenyl]-1,6-dihydropyrimidine-4-carboxamide, Hexa Vinylpyrrolidone K15, MANGANESE (II) ION, ...
Authors:Cuypers, M.G, Slavish, P.J, Jayaraman, S, Rankovic, Z, White, S.W.
Deposit date:2020-01-22
Release date:2021-02-10
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.68 Å)
Cite:Chemical scaffold recycling: Structure-guided conversion of an HIV integrase inhibitor into a potent influenza virus RNA-dependent RNA polymerase inhibitor designed to minimize resistance potential.
Eur.J.Med.Chem., 247, 2023
5V73
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BU of 5v73 by Molmil
Crystal structure of N110A mutant of human macrophage migration inhibitory factor
Descriptor: GLYCEROL, ISOPROPYL ALCOHOL, Macrophage migration inhibitory factor, ...
Authors:Pantouris, G, Lolis, E.
Deposit date:2017-03-17
Release date:2018-03-21
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (1.68 Å)
Cite:Crystal structure of N110A mutant of human macrophage migration inhibitory factor
To Be Published
6VJH
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BU of 6vjh by Molmil
The crystal structure of the 2009 H1N1/California PA endonuclease wild type in complex with SJ000986192
Descriptor: 2-[2-[(cyclohexylmethyl-$l^{3}-oxidanyl)carbonylamino]propan-2-yl]-~{N}-[2-(5-methoxy-4-oxidanyl-cyclohexa-1,3,5-trien-1-yl)ethyl]-5-oxidanyl-6-oxidanylidene-pyrimidine-4-carboxamide, Hexa Vinylpyrrolidone K15, MANGANESE (II) ION, ...
Authors:Cuypers, M.G, Slavish, P.J, Rankovic, Z, White, S.W.
Deposit date:2020-01-16
Release date:2021-02-10
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.55 Å)
Cite:Chemical scaffold recycling: Structure-guided conversion of an HIV integrase inhibitor into a potent influenza virus RNA-dependent RNA polymerase inhibitor designed to minimize resistance potential.
Eur.J.Med.Chem., 247, 2023
6VIV
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BU of 6viv by Molmil
The crystal structure of the 2009 H1N1 PA endonuclease mutant I38T in complex with SJ000986192
Descriptor: 2-[2-[(cyclohexylmethyl-$l^{3}-oxidanyl)carbonylamino]propan-2-yl]-~{N}-[2-(5-methoxy-4-oxidanyl-cyclohexa-1,3,5-trien-1-yl)ethyl]-5-oxidanyl-6-oxidanylidene-pyrimidine-4-carboxamide, Hexa Vinylpyrrolidone K15, MANGANESE (II) ION, ...
Authors:Cuypers, M.G, Slavish, P.J, Rankovic, Z, White, S.W.
Deposit date:2020-01-14
Release date:2021-02-10
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.23 Å)
Cite:Chemical scaffold recycling: Structure-guided conversion of an HIV integrase inhibitor into a potent influenza virus RNA-dependent RNA polymerase inhibitor designed to minimize resistance potential.
Eur.J.Med.Chem., 247, 2023
9COD
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BU of 9cod by Molmil
C15 symmetrized DEV collar
Descriptor: SGNH hydrolase-type esterase domain-containing protein
Authors:Iglesias, S.M, Hou, C.F.D, Li, F, Cingolani, G.
Deposit date:2024-07-16
Release date:2024-10-16
Method:ELECTRON MICROSCOPY (4.7 Å)
Cite:Integrative structural analysis of Pseudomonas phage DEV reveals a genome ejection motor.
Nat Commun, 15, 2024
5V97
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BU of 5v97 by Molmil
Structure of the H477R variant of rat cytosolic PEPCK in complex with GTP.
Descriptor: GUANOSINE-5'-TRIPHOSPHATE, MANGANESE (II) ION, Phosphoenolpyruvate carboxykinase, ...
Authors:Holyoak, T, Cui, D.S.
Deposit date:2017-03-23
Release date:2017-04-12
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Asymmetric Anchoring Is Required for Efficient Omega-Loop Opening and Closing in Cytosolic Phosphoenolpyruvate Carboxykinase.
Biochemistry, 56, 2017
6Z5L
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BU of 6z5l by Molmil
Helical reconstruction of influenza A virus M1 in complex with nucleic acid.
Descriptor: Matrix protein 1
Authors:Xiong, X, Qu, K, Briggs, J.A.G.
Deposit date:2020-05-26
Release date:2020-10-14
Last modified:2024-05-22
Method:ELECTRON MICROSCOPY (3.8 Å)
Cite:The native structure of the assembled matrix protein 1 of influenza A virus.
Nature, 587, 2020
6VWL
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BU of 6vwl by Molmil
70S ribosome bound to HIV frameshifting stem-loop (FSS) and P/E tRNA (rotated conformation)
Descriptor: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ...
Authors:Loerch, S, Bao, C, Ling, C, Korostelev, A.A, Grigorieff, N, Ermolenko, D.M.
Deposit date:2020-02-20
Release date:2020-06-03
Last modified:2024-10-23
Method:ELECTRON MICROSCOPY (3.1 Å)
Cite:mRNA stem-loops can pause the ribosome by hindering A-site tRNA binding.
Elife, 9, 2020
5VA4
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BU of 5va4 by Molmil
TRIM-Cyclophilin A B-box 2 and coiled-coil chimera
Descriptor: TRIM5/cyclophilin A V4 fusion protein, ZINC ION
Authors:Wagner, J.M, Ganser-Pornillos, B.K, Pornillos, O.W.
Deposit date:2017-03-24
Release date:2017-11-22
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (2.306 Å)
Cite:General Model for Retroviral Capsid Pattern Recognition by TRIM5 Proteins.
J. Virol., 92, 2018
9H28
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BU of 9h28 by Molmil
Alternative conformation LGTV with TBEV prME
Descriptor: 1-PALMITOYL-2-LINOLEOYL-SN-GLYCERO-3-PHOSPHOCHOLINE, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Genome polyprotein, ...
Authors:Bisikalo, K, Rosendal, E.
Deposit date:2024-10-11
Release date:2024-11-06
Last modified:2024-11-13
Method:ELECTRON MICROSCOPY (3.22 Å)
Cite:The influence of the pre-membrane and envelope proteins on structure, pathogenicity and tropism of tick-borne encephalitis virus
Biorxiv, 2024
9CTW
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BU of 9ctw by Molmil
Cryo-EM structure of SARS-CoV-2 M (long conformation) in the presence of C1P
Descriptor: Long conformation Fab heavy chain, Long conformation Fab light chain, Membrane protein
Authors:Dolan, K.A, Brohawn, S.G.
Deposit date:2024-07-25
Release date:2024-11-06
Method:ELECTRON MICROSCOPY (3.01 Å)
Cite:Direct lipid interactions control SARS-CoV-2 M protein conformational dynamics and virus assembly
To Be Published
9EOK
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BU of 9eok by Molmil
Minus end of the vertebrate gamma-tubulin ring complex-capped microtubule
Descriptor: GUANOSINE-5'-DIPHOSPHATE, GUANOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, ...
Authors:Vermeulen, B.J.A, Pfeffer, S.
Deposit date:2024-03-15
Release date:2024-11-06
Method:ELECTRON MICROSCOPY (23 Å)
Cite:gamma-TuRC asymmetry induces local protofilament mismatch at the RanGTP-stimulated microtubule minus end.
Embo J., 43, 2024
6VZ7
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BU of 6vz7 by Molmil
Escherichia coli transcription-translation complex C1 (TTC-C1) containing a 27 nt long mRNA spacer, NusG, and fMet-tRNAs at P-site and E-site
Descriptor: 16S rRNA, 23S rRNA, 30S ribosomal protein S1, ...
Authors:Molodtsov, V, Wang, C, Su, M, Ebright, R.H.
Deposit date:2020-02-27
Release date:2020-09-02
Last modified:2024-10-16
Method:ELECTRON MICROSCOPY (7 Å)
Cite:Structural basis of transcription-translation coupling.
Science, 369, 2020
9GCS
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BU of 9gcs by Molmil
Rho-ATP-Psu complex II
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, Polarity suppression protein, ...
Authors:Gjorgjevikj, D, Wahl, M.C, Hilal, T, Loll, B.
Deposit date:2024-08-02
Release date:2024-10-09
Method:ELECTRON MICROSCOPY (3.9 Å)
Cite:Rho-ATP-Psu complex II
To Be Published
9FOJ
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BU of 9foj by Molmil
LGTV TP21. Langat virus, strain TP21
Descriptor: 1-PALMITOYL-2-LINOLEOYL-SN-GLYCERO-3-PHOSPHOCHOLINE, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Envelope protein E, ...
Authors:Bisikalo, K, Rosendal, E.
Deposit date:2024-06-12
Release date:2024-11-06
Method:ELECTRON MICROSCOPY (3.82 Å)
Cite:The influence of the pre-membrane and envelope proteins on structure, pathogenicity and tropism of tick-borne encephalitis virus
Biorxiv, 2024
9DG1
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BU of 9dg1 by Molmil
Structure of Plasmodium falciparum apicoplast DNA polymerase in complex with DNA (exo-minus)
Descriptor: DNA (5'-D(*AP*CP*TP*GP*TP*GP*AP*GP*GP*CP*AP*TP*CP*CP*GP*TP*AP*GP*(2DA))-3'), DNA (5'-D(P*AP*CP*TP*CP*TP*AP*CP*GP*GP*AP*TP*GP*CP*CP*TP*CP*AP*CP*AP*G)-3'), Plastid replication-repair enzyme
Authors:Lo, C.-Y, Gao, Y.
Deposit date:2024-09-01
Release date:2024-11-06
Last modified:2024-11-13
Method:ELECTRON MICROSCOPY (5.2 Å)
Cite:Cryo-EM structures of the Plasmodium falciparum apicoplast DNA polymerase.
J.Mol.Biol., 2024
9GCU
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BU of 9gcu by Molmil
Rho-P167L-ATP gamma S
Descriptor: ADENOSINE-5'-DIPHOSPHATE, MAGNESIUM ION, Transcription termination factor Rho
Authors:Gjorgjevikj, D, Wahl, M.C, Hilal, T, Loll, B.
Deposit date:2024-08-02
Release date:2024-10-09
Method:ELECTRON MICROSCOPY (2.8 Å)
Cite:Rho-P167L-ATP gamma S
To Be Published
9INW
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BU of 9inw by Molmil
Crystal structure of DAPK1 in complex with compound 9
Descriptor: (~{E})-1-[2,4-bis(oxidanyl)phenyl]-3-(3-chloranyl-4-oxidanyl-phenyl)prop-2-en-1-one, Death-associated protein kinase 1, SULFATE ION
Authors:Yokoyama, T.
Deposit date:2024-07-08
Release date:2024-10-09
Method:X-RAY DIFFRACTION (1.52 Å)
Cite:Discovery and optimization of isoliquiritigenin as a death-associated protein kinase 1 inhibitor.
Eur.J.Med.Chem., 279, 2024

227344

數據於2024-11-13公開中

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