Loading
PDBj
MenuPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDBDonate
RCSB PDBPDBeBMRBAdv. SearchSearch help

4JJM
DownloadVisualize
BU of 4jjm by Molmil
Structure of a cyclophilin from Citrus sinensis (CsCyp) in complex with cyclosporin A
Descriptor: Peptidyl-prolyl cis-trans isomerase, cyclosporin A
Authors:Campos, B.M, Ambrosio, A.L.B, Souza, T.A.C.B, Barbosa, J.A.R.G, Benedetti, C.E.
Deposit date:2013-03-08
Release date:2013-06-12
Last modified:2023-12-06
Method:X-RAY DIFFRACTION (2.09 Å)
Cite:A redox 2-cys mechanism regulates the catalytic activity of divergent cyclophilins.
Plant Physiol., 162, 2013
5VC0
DownloadVisualize
BU of 5vc0 by Molmil
Crystal structure of human CYP3A4 bound to ritonavir
Descriptor: Cytochrome P450 3A4, PROTOPORPHYRIN IX CONTAINING FE, RITONAVIR
Authors:Sevrioukova, I.
Deposit date:2017-03-30
Release date:2017-05-31
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:High-Level Production and Properties of the Cysteine-Depleted Cytochrome P450 3A4.
Biochemistry, 56, 2017
5VCC
DownloadVisualize
BU of 5vcc by Molmil
Crystal structure of human CYP3A4 bound to glycerol
Descriptor: 1,2-ETHANEDIOL, Cytochrome P450 3A4, GLYCEROL, ...
Authors:Sevrioukova, I.
Deposit date:2017-03-31
Release date:2017-05-31
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:High-Level Production and Properties of the Cysteine-Depleted Cytochrome P450 3A4.
Biochemistry, 56, 2017
1KMJ
DownloadVisualize
BU of 1kmj by Molmil
E. coli NifS/CsdB protein at 2.0A with the cysteine persulfide intermediate (residue CSS).
Descriptor: PYRIDOXAL-5'-PHOSPHATE, Selenocysteine lyase
Authors:Lima, C.D, Burley, S.K, New York SGX Research Center for Structural Genomics (NYSGXRC)
Deposit date:2001-12-16
Release date:2001-12-21
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (2 Å)
Cite:Analysis of the E. coli NifS CsdB protein at 2.0 A reveals the structural basis for perselenide and persulfide intermediate formation.
J.Mol.Biol., 315, 2002
5YZF
DownloadVisualize
BU of 5yzf by Molmil
X-ray crystal structure of met K42C sperm whale myoglobin
Descriptor: PROTOPORPHYRIN IX CONTAINING FE, sperm whale myoglobin
Authors:Yuan, H.
Deposit date:2017-12-14
Release date:2018-03-07
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.77 Å)
Cite:Formation of Cys-heme cross-link in K42C myoglobin under reductive conditions with molecular oxygen
J. Inorg. Biochem., 182, 2018
5LG3
DownloadVisualize
BU of 5lg3 by Molmil
X-ray structure of a pentameric ligand gated ion channel from Erwinia chrysanthemi (ELIC) in complex with chlorpromazine
Descriptor: 3-(2-chloro-10H-phenothiazin-10-yl)-N,N-dimethylpropan-1-amine, Gamma-aminobutyric-acid receptor subunit beta-1
Authors:Nys, M, Wijckmans, E, Farinha, A, Brams, M, Spurny, R, Ulens, C.
Deposit date:2016-07-05
Release date:2016-10-26
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (3.567 Å)
Cite:Allosteric binding site in a Cys-loop receptor ligand-binding domain unveiled in the crystal structure of ELIC in complex with chlorpromazine.
Proc.Natl.Acad.Sci.USA, 113, 2016
8YX6
DownloadVisualize
BU of 8yx6 by Molmil
Structure of a Cys-loop Receptor in Zinc Binding State
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Ligand-gated cation channel ZACN, ...
Authors:Lu, X.H, Yang, X, Shen, Y.Q.
Deposit date:2024-04-02
Release date:2025-01-01
Method:ELECTRON MICROSCOPY (2.9 Å)
Cite:Structure of a Cys-loop Receptor in Zinc Binding State
To Be Published
8YX7
DownloadVisualize
BU of 8yx7 by Molmil
Structure of a Cys-loop Receptor under Acidic Condition
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Ligand-gated cation channel ZACN
Authors:Lu, X.H, Yang, X, Shen, Y.Q.
Deposit date:2024-04-02
Release date:2025-01-01
Method:ELECTRON MICROSCOPY (2.8 Å)
Cite:Structure of a Cys-loop Receptor under Acidic Condition
To Be Published
3KM6
DownloadVisualize
BU of 3km6 by Molmil
Crystal Structure of the Human GST Pi C47S/Y108V Double Mutant in Complex with the Ethacrynic Acid-Glutathione Conjugate
Descriptor: CALCIUM ION, ETHACRYNIC ACID, GLUTATHIONE, ...
Authors:Parker, L.J.
Deposit date:2009-11-10
Release date:2010-03-23
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Diuretic drug binding to human glutathione transferase P1-1: potential role of Cys-101 revealed in the double mutant C47S/Y108V.
J.Mol.Recognit., 24
3WNC
DownloadVisualize
BU of 3wnc by Molmil
Crystal structure of EF-Pyl in complex with GDP
Descriptor: GUANOSINE-5'-DIPHOSPHATE, MAGNESIUM ION, Protein translation elongation factor 1A
Authors:Yanagisawa, T, Ishii, R, Fukunaga, R, Sengoku, T, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2013-12-08
Release date:2014-12-10
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:A SelB/EF-Tu/aIF2 gamma-like protein from Methanosarcina mazei in the GTP-bound form binds cysteinyl-tRNA(Cys.).
J. Struct. Funct. Genomics, 16, 2015
3WNB
DownloadVisualize
BU of 3wnb by Molmil
Crystal structure of EF-Pyl in complex with GMPPNP
Descriptor: MAGNESIUM ION, PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER, Protein translation elongation factor 1A
Authors:Yanagisawa, T, Ishii, R, Fukunaga, R, Sengoku, T, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2013-12-08
Release date:2014-12-10
Last modified:2024-11-20
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:A SelB/EF-Tu/aIF2 gamma-like protein from Methanosarcina mazei in the GTP-bound form binds cysteinyl-tRNA(Cys.).
J. Struct. Funct. Genomics, 16, 2015
2WPN
DownloadVisualize
BU of 2wpn by Molmil
Structure of the oxidised, as-isolated NiFeSe hydrogenase from D. vulgaris Hildenborough
Descriptor: 3-[DODECYL(DIMETHYL)AMMONIO]PROPANE-1-SULFONATE, BIS-(MU-2-OXO),[(MU-3--SULFIDO)-BIS(MU-2--SULFIDO)-TRIS(CYS-S)-TRI-IRON] (AQUA)(GLU-O)IRON(II), CARBONMONOXIDE-(DICYANO) IRON, ...
Authors:Marques, M.C, Coelho, R, De Lacey, A.L, Pereira, I.A.C, Matias, P.M.
Deposit date:2009-08-07
Release date:2010-01-12
Last modified:2025-04-09
Method:X-RAY DIFFRACTION (2.04 Å)
Cite:The three-dimensional structure of [NiFeSe] hydrogenase from Desulfovibrio vulgaris Hildenborough: a hydrogenase without a bridging ligand in the active site in its oxidised, "as-isolated" state.
J.Mol.Biol., 396, 2010
1OEV
DownloadVisualize
BU of 1oev by Molmil
Oxidation state of protein tyrosine phosphatase 1B
Descriptor: MAGNESIUM ION, PROTEIN-TYROSINE PHOSPHATASE, NON-RECEPTOR TYPE 1
Authors:van Montfort, R.L.M, Congreve, M, Tisi, D, Carr, R, Jhoti, H.
Deposit date:2003-03-31
Release date:2003-06-12
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Oxidation state of the active-site cysteine in protein tyrosine phosphatase 1B.
Nature, 423, 2003
5OJT
DownloadVisualize
BU of 5ojt by Molmil
Structure-Activity Relationships and Biological Characterization of a Novel, Potent and Serum Stable C-X-C chemokine receptor type 4 (CXCR4) Antagonist
Descriptor: ACE-ARG-ALA-(D)CYS-ARG-BNA-HIS-PEN
Authors:Brancaccio, D, Carotenuto, A.
Deposit date:2017-07-24
Release date:2017-11-22
Last modified:2023-11-15
Method:SOLUTION NMR
Cite:Structure-Activity Relationships and Biological Characterization of a Novel, Potent, and Serum Stable C-X-C Chemokine Receptor Type 4 (CXCR4) Antagonist.
J. Med. Chem., 60, 2017
2IFQ
DownloadVisualize
BU of 2ifq by Molmil
Crystal structure of S-nitroso thioredoxin
Descriptor: ETHANOL, Thioredoxin
Authors:Weichsel, A, Montfort, W.R.
Deposit date:2006-09-21
Release date:2006-12-05
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (1.2 Å)
Cite:Buried s-nitrosocysteine revealed in crystal structures of human thioredoxin.
Biochemistry, 46, 2007
3R1R
DownloadVisualize
BU of 3r1r by Molmil
RIBONUCLEOTIDE REDUCTASE R1 PROTEIN WITH AMPPNP OCCUPYING THE ACTIVITY SITE FROM ESCHERICHIA COLI
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, RIBONUCLEOTIDE REDUCTASE R1 PROTEIN, RIBONUCLEOTIDE REDUCTASE R2 PROTEIN
Authors:Eriksson, M, Eklund, H.
Deposit date:1997-07-21
Release date:1998-01-28
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (3 Å)
Cite:Binding of allosteric effectors to ribonucleotide reductase protein R1: reduction of active-site cysteines promotes substrate binding.
Structure, 5, 1997
1M2A
DownloadVisualize
BU of 1m2a by Molmil
Crystal structure at 1.5 Angstroms resolution of the wild type thioredoxin-like [2Fe-2S] ferredoxin from Aquifex aeolicus
Descriptor: FE2/S2 (INORGANIC) CLUSTER, SULFATE ION, ZINC ION, ...
Authors:Yeh, A.P, Ambroggio, X.I, Andrade, S.L.A, Einsle, O, Chatelet, C, Meyer, J, Rees, D.C.
Deposit date:2002-06-22
Release date:2002-09-18
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:High-resolution crystal structures of the wild type and Cys-55-->Ser and Cys-59-->Ser variants of the thioredoxin-like [2Fe-2S] ferredoxin from Aquifex aeolicus
J.Biol.Chem., 277, 2002
4KUF
DownloadVisualize
BU of 4kuf by Molmil
Crystal structure of the catalytic domain of botulinum neurotoxin BoNT/A C134 mutant with MTSEA modified Cys-165 causing stretch disorder
Descriptor: (2S)-2-hydroxybutanedioic acid, 1,2-ETHANEDIOL, Botulinum neurotoxin A light chain, ...
Authors:Stura, E.A, Vera, L, Ptchelkine, D, Bakirci, H, Garcia, S, Dive, V.
Deposit date:2013-05-22
Release date:2014-07-09
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (1.697 Å)
Cite:Covalent modification of the active site cysteine stresses Clostridium botulinum neurotoxin A
To be Published
3U8T
DownloadVisualize
BU of 3u8t by Molmil
Human thrombin complexed with D-Phe-Pro-D-Arg-Cys
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, 2-acetamido-2-deoxy-beta-D-glucopyranose, CHLORIDE ION, ...
Authors:Figueiredo, A.C, Clement, C.C, Philipp, M, Pereira, P.J.B.
Deposit date:2011-10-17
Release date:2012-04-11
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (1.861 Å)
Cite:Rational design and characterization of d-phe-pro-d-arg-derived direct thrombin inhibitors.
Plos One, 7, 2012
7LVZ
DownloadVisualize
BU of 7lvz by Molmil
Crystal structure of ADO
Descriptor: 2-aminoethanethiol dioxygenase, CHLORIDE ION, FE (II) ION, ...
Authors:Bingman, C.A, Fernandez, R.L, Smith, R.W, Fox, B.G, Brunold, T.C.
Deposit date:2021-02-26
Release date:2022-01-05
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (1.89 Å)
Cite:The Crystal Structure of Cysteamine Dioxygenase Reveals the Origin of the Large Substrate Scope of This Vital Mammalian Enzyme.
Biochemistry, 60, 2021
2IIY
DownloadVisualize
BU of 2iiy by Molmil
Crystal structure of S-nitroso thioredoxin
Descriptor: Thioredoxin
Authors:Weichsel, A, Montfort, W.R.
Deposit date:2006-09-28
Release date:2006-12-05
Last modified:2024-11-13
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Buried s-nitrosocysteine revealed in crystal structures of human thioredoxin.
Biochemistry, 46, 2007
1OEU
DownloadVisualize
BU of 1oeu by Molmil
Oxidation state of protein tyrosine phosphatase 1B
Descriptor: MAGNESIUM ION, PROTEIN-TYROSINE PHOSPHATASE, NON-RECEPTOR TYPE 1
Authors:van Montfort, R.L.M, Congreve, M, Tisi, D, Carr, R, Jhoti, H.
Deposit date:2003-03-31
Release date:2003-06-12
Last modified:2024-11-13
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Oxidation state of the active-site cysteine in protein tyrosine phosphatase 1B.
Nature, 423, 2003
8YX8
DownloadVisualize
BU of 8yx8 by Molmil
Structure of a Cys-loop Receptor in Apo State
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Ligand-gated cation channel ZACN
Authors:Lu, X.H, Yang, X, Shen, Y.Q.
Deposit date:2024-04-02
Release date:2025-01-01
Method:ELECTRON MICROSCOPY (2.8 Å)
Cite:Structure of a Cys-loop Receptor in Apo State
To Be Published
6E8L
DownloadVisualize
BU of 6e8l by Molmil
Crystal Structure of Alkyl hydroperoxidase D (AhpD) from Streptococcus pneumoniae (Strain D39/ NCTC 7466)
Descriptor: Alkyl hydroperoxide reductase AhpD
Authors:Meng, Y, Davies, J, North, R, Coombes, D, Horne, C, Hampton, M, Dobson, R.
Deposit date:2018-07-30
Release date:2019-08-28
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structure-function analyses of alkylhydroperoxidase D fromStreptococcus pneumoniaereveal an unusual three-cysteine active site architecture.
J.Biol.Chem., 295, 2020
5XG8
DownloadVisualize
BU of 5xg8 by Molmil
Galectin-13/Placental Protein 13 variant R53H crystal structure
Descriptor: GLYCEROL, Galactoside-binding soluble lectin 13
Authors:Wang, Y, Su, J.Y.
Deposit date:2017-04-12
Release date:2018-01-31
Last modified:2024-11-13
Method:X-RAY DIFFRACTION (1.55 Å)
Cite:Galectin-13, a different prototype galectin, does not bind beta-galacto-sides and forms dimers via intermolecular disulfide bridges between Cys-136 and Cys-138
Sci Rep, 8, 2018

238582

數據於2025-07-09公開中

PDB statisticsPDBj update infoContact PDBjnumon