Loading
PDBj
MenuPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDBDonate
RCSB PDBPDBeBMRBAdv. SearchSearch help

7BL2
DownloadVisualize
BU of 7bl2 by Molmil
pre-50S-ObgE particle state 1
Descriptor: 23S ribosomal RNA, 50S ribosomal protein L11, 50S ribosomal protein L13, ...
Authors:Hilal, T, Nikolay, R, Schmidt, S, Spahn, C.M.T.
Deposit date:2021-01-18
Release date:2021-05-12
Last modified:2024-05-01
Method:ELECTRON MICROSCOPY (3.7 Å)
Cite:Snapshots of native pre-50S ribosomes reveal a biogenesis factor network and evolutionary specialization.
Mol.Cell, 81, 2021
7BL6
DownloadVisualize
BU of 7bl6 by Molmil
50S-ObgE-GMPPNP particle
Descriptor: 23S ribosomal RNA, 50S ribosomal protein L13, 50S ribosomal protein L14, ...
Authors:Hilal, T, Nikolay, R, Schmidt, S, Spahn, C.M.T.
Deposit date:2021-01-18
Release date:2021-05-12
Last modified:2024-05-01
Method:ELECTRON MICROSCOPY (4 Å)
Cite:Snapshots of native pre-50S ribosomes reveal a biogenesis factor network and evolutionary specialization.
Mol.Cell, 81, 2021
7BL3
DownloadVisualize
BU of 7bl3 by Molmil
pre-50S-ObgE particle state 2
Descriptor: 23S ribosomal RNA, 50S ribosomal protein L11, 50S ribosomal protein L13, ...
Authors:Hilal, T, Nikolay, R, Spahn, C.M.T.
Deposit date:2021-01-18
Release date:2021-05-12
Last modified:2024-10-23
Method:ELECTRON MICROSCOPY (3.5 Å)
Cite:Snapshots of native pre-50S ribosomes reveal a biogenesis factor network and evolutionary specialization.
Mol.Cell, 81, 2021
7BII
DownloadVisualize
BU of 7bii by Molmil
Crystal structure of Nematocida HUWE1
Descriptor: E3 ubiquitin-protein ligase HUWE1
Authors:Grabarczyk, D.B, Petrova, O.A, Meinhart, A, Kessler, D, Clausen, T.
Deposit date:2021-01-12
Release date:2021-07-28
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (3.037 Å)
Cite:HUWE1 employs a giant substrate-binding ring to feed and regulate its HECT E3 domain.
Nat.Chem.Biol., 17, 2021
6NXK
DownloadVisualize
BU of 6nxk by Molmil
Ubiquitin binding variants
Descriptor: Anaphase-promoting complex subunit 2, Polyubiquitin-C
Authors:Miller, D.J, Watson, E.R.
Deposit date:2019-02-08
Release date:2020-01-15
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Protein engineering of a ubiquitin-variant inhibitor of APC/C identifies a cryptic K48 ubiquitin chain binding site.
Proc.Natl.Acad.Sci.USA, 116, 2019
1J5S
DownloadVisualize
BU of 1j5s by Molmil
Crystal structure of uronate isomerase (TM0064) from Thermotoga maritima at 2.85 A resolution
Descriptor: URONATE ISOMERASE
Authors:Joint Center for Structural Genomics (JCSG)
Deposit date:2002-07-02
Release date:2002-07-17
Last modified:2024-05-22
Method:X-RAY DIFFRACTION (2.85 Å)
Cite:Crystal structure of uronate isomerase (TM0064) from Thermotoga maritima at 2.85 A resolution.
Proteins, 53, 2003
6OB1
DownloadVisualize
BU of 6ob1 by Molmil
Structure of WHB in complex with Ubiquitin Variant
Descriptor: Anaphase-promoting complex subunit 2, Ubiquitin
Authors:Edmond, R.W, Grace, C.R.
Deposit date:2019-03-19
Release date:2019-08-14
Last modified:2024-05-01
Method:SOLUTION NMR
Cite:Protein engineering of a ubiquitin-variant inhibitor of APC/C identifies a cryptic K48 ubiquitin chain binding site.
Proc.Natl.Acad.Sci.USA, 116, 2019
7OP0
DownloadVisualize
BU of 7op0 by Molmil
Crystal structure of complement C5 in complex with chemically synthesized K92 knob domain.
Descriptor: 1,2-ETHANEDIOL, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Complement C5 alpha chain, ...
Authors:Macpherson, A, van der Elsen, J.M.H, Schulze, M.E, Birtley, J.R.
Deposit date:2021-05-28
Release date:2022-04-06
Last modified:2024-11-06
Method:X-RAY DIFFRACTION (2.57 Å)
Cite:The Chemical Synthesis of Knob Domain Antibody Fragments.
Acs Chem.Biol., 16, 2021
6OVH
DownloadVisualize
BU of 6ovh by Molmil
Cryo-EM structure of Bimetallic dodecameric cage design 3 (BMC3) from cytochrome cb562
Descriptor: ACETOHYDROXAMIC ACID, FE (III) ION, HEME C, ...
Authors:Golub, E, Subramanian, R.H, Yan, X, Alberstein, R.G, Tezcan, F.A.
Deposit date:2019-05-07
Release date:2020-01-29
Last modified:2024-10-23
Method:ELECTRON MICROSCOPY (2.6 Å)
Cite:Constructing protein polyhedra via orthogonal chemical interactions.
Nature, 578, 2020
5O86
DownloadVisualize
BU of 5o86 by Molmil
Mutant of claas II CPD photolyase from Methanosarcina mazei - W388F
Descriptor: Deoxyribodipyrimidine photolyase, FLAVIN-ADENINE DINUCLEOTIDE, GLYCEROL, ...
Authors:Ignatz, E, Essen, L.-O.
Deposit date:2017-06-12
Release date:2017-09-13
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (1.687 Å)
Cite:Nicotinamide Adenine Dinucleotides Arrest Photoreduction of Class II DNA Photolyases in FADH ̇ State.
Photochem. Photobiol., 94, 2018
5O9Z
DownloadVisualize
BU of 5o9z by Molmil
Cryo-EM structure of a pre-catalytic human spliceosome primed for activation (B complex)
Descriptor: 116 kDa U5 small nuclear ribonucleoprotein component, Homo sapiens RNA, U6 small nuclear 1 (RNU6-1), ...
Authors:Bertram, K, Kastner, B.
Deposit date:2017-06-20
Release date:2017-08-16
Last modified:2018-10-24
Method:ELECTRON MICROSCOPY (4.5 Å)
Cite:Cryo-EM Structure of a Pre-catalytic Human Spliceosome Primed for Activation.
Cell, 170, 2017
5O8D
DownloadVisualize
BU of 5o8d by Molmil
Mutant of class II CPD photolyase from Methanosarcina mazei - Y345F
Descriptor: Deoxyribodipyrimidine photolyase, FLAVIN-ADENINE DINUCLEOTIDE, GLYCEROL, ...
Authors:Ignatz, E, Essen, L.-O.
Deposit date:2017-06-13
Release date:2017-09-13
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (2 Å)
Cite:Nicotinamide Adenine Dinucleotides Arrest Photoreduction of Class II DNA Photolyases in FADH ̇ State.
Photochem. Photobiol., 94, 2018
1KQ3
DownloadVisualize
BU of 1kq3 by Molmil
CRYSTAL STRUCTURE OF A GLYCEROL DEHYDROGENASE (TM0423) FROM THERMOTOGA MARITIMA AT 1.5 A RESOLUTION
Descriptor: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, CHLORIDE ION, ZINC ION, ...
Authors:Wilson, I.A, Miller, M.D, Joint Center for Structural Genomics (JCSG)
Deposit date:2002-01-03
Release date:2002-02-27
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Structural genomics of the Thermotoga maritima proteome implemented in a high-throughput structure determination pipeline
Proc.Natl.Acad.Sci.USA, 99, 2002
1KQ4
DownloadVisualize
BU of 1kq4 by Molmil
CRYSTAL STRUCTURE OF A THY1-COMPLEMENTING PROTEIN (TM0449) FROM THERMOTOGA MARITIMA AT 2.25 A RESOLUTION
Descriptor: FLAVIN-ADENINE DINUCLEOTIDE, HYPOTHETICAL PROTEIN TM0449
Authors:Wilson, I.A, Miller, M.D, Joint Center for Structural Genomics (JCSG)
Deposit date:2002-01-03
Release date:2002-02-27
Last modified:2024-11-20
Method:X-RAY DIFFRACTION (2.25 Å)
Cite:Structural genomics of the Thermotoga maritima proteome implemented in a high-throughput structure determination pipeline
Proc.Natl.Acad.Sci.USA, 99, 2002
6GV5
DownloadVisualize
BU of 6gv5 by Molmil
Characterization of extracellular matrix binding protein- (Embp)-mediated Staphylococcus epidermidis adherence to fibronectin
Descriptor: Hyperosmolarity resistance protein Emb
Authors:Buettner, H, Rohde, H, Perbandt, M.
Deposit date:2018-06-20
Release date:2019-07-03
Last modified:2024-05-15
Method:X-RAY DIFFRACTION (1.55 Å)
Cite:A Giant Extracellular Matrix Binding Protein of Staphylococcus epidermidis Binds Surface-Immobilized Fibronectin via a Novel Mechanism.
Mbio, 11, 2020
6GV8
DownloadVisualize
BU of 6gv8 by Molmil
Characterization of extracellular matrix binding protein- (Embp)-mediated Staphylococcus epidermidis adherence to fibronectin
Descriptor: Hyperosmolarity resistance protein Emb
Authors:Buettner, H, Rohde, H, Perbandt, M.
Deposit date:2018-06-20
Release date:2019-07-03
Last modified:2024-05-15
Method:X-RAY DIFFRACTION (1.394 Å)
Cite:A Giant Extracellular Matrix Binding Protein of Staphylococcus epidermidis Binds Surface-Immobilized Fibronectin via a Novel Mechanism.
Mbio, 11, 2020
6WZ2
DownloadVisualize
BU of 6wz2 by Molmil
Co-bound structure of an engineered protein trimer, TriCyt3
Descriptor: CHLORIDE ION, COBALT (II) ION, HEME C, ...
Authors:Tezcan, F.A, Kakkis, A.
Deposit date:2020-05-13
Release date:2020-09-16
Last modified:2024-11-20
Method:X-RAY DIFFRACTION (2.0006 Å)
Cite:Metal-Templated Design of Chemically Switchable Protein Assemblies with High-Affinity Coordination Sites.
Angew.Chem.Int.Ed.Engl., 59, 2020
6WZ7
DownloadVisualize
BU of 6wz7 by Molmil
Mn-bound structure of a TriCyt3 variant
Descriptor: CALCIUM ION, CHLORIDE ION, HEME C, ...
Authors:Tezcan, F.A, Kakkis, A.
Deposit date:2020-05-13
Release date:2020-09-16
Last modified:2024-12-25
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Metal-Templated Design of Chemically Switchable Protein Assemblies with High-Affinity Coordination Sites.
Angew.Chem.Int.Ed.Engl., 59, 2020
6WZC
DownloadVisualize
BU of 6wzc by Molmil
Ni-bound structure of an engineered protein trimer, TriCyt3
Descriptor: CALCIUM ION, CHLORIDE ION, HEME C, ...
Authors:Tezcan, F.A, Kakkis, A.
Deposit date:2020-05-13
Release date:2020-09-16
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (2.195 Å)
Cite:Metal-Templated Design of Chemically Switchable Protein Assemblies with High-Affinity Coordination Sites.
Angew.Chem.Int.Ed.Engl., 59, 2020
6WZ1
DownloadVisualize
BU of 6wz1 by Molmil
Mn-bound structure of an engineered protein trimer, TriCyt3
Descriptor: CALCIUM ION, CHLORIDE ION, HEME C, ...
Authors:Tezcan, F.A, Kakkis, A.
Deposit date:2020-05-13
Release date:2020-09-16
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (1.999 Å)
Cite:Metal-Templated Design of Chemically Switchable Protein Assemblies with High-Affinity Coordination Sites.
Angew.Chem.Int.Ed.Engl., 59, 2020
6WYU
DownloadVisualize
BU of 6wyu by Molmil
Crystallographic trimer of metal-free TriCyt2
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, HEME C, SULFATE ION, ...
Authors:Tezcan, F.A, Kakkis, A.
Deposit date:2020-05-13
Release date:2020-09-16
Last modified:2024-10-23
Method:X-RAY DIFFRACTION (1.76 Å)
Cite:Metal-Templated Design of Chemically Switchable Protein Assemblies with High-Affinity Coordination Sites.
Angew.Chem.Int.Ed.Engl., 59, 2020
6X7E
DownloadVisualize
BU of 6x7e by Molmil
Co-bound structure of an engineered protein trimer, TriCyt3, with delta isomerism at the hexahistidine coordination site
Descriptor: CHLORIDE ION, COBALT (II) ION, HEME C, ...
Authors:Tezcan, F.A, Kakkis, A.
Deposit date:2020-05-29
Release date:2020-09-16
Last modified:2024-10-23
Method:X-RAY DIFFRACTION (1.9987 Å)
Cite:Metal-Templated Design of Chemically Switchable Protein Assemblies with High-Affinity Coordination Sites.
Angew.Chem.Int.Ed.Engl., 59, 2020
6X8X
DownloadVisualize
BU of 6x8x by Molmil
Cu-bound structure of an engineered metal-dependent protein trimer, TriCyt1
Descriptor: CALCIUM ION, COPPER (II) ION, HEME C, ...
Authors:Tezcan, F.A, Kakkis, A.
Deposit date:2020-06-02
Release date:2020-09-16
Last modified:2024-10-09
Method:X-RAY DIFFRACTION (2.505 Å)
Cite:Metal-Templated Design of Chemically Switchable Protein Assemblies with High-Affinity Coordination Sites.
Angew.Chem.Int.Ed.Engl., 59, 2020
6WZ0
DownloadVisualize
BU of 6wz0 by Molmil
Fe-bound structure of an engineered metal-dependent protein trimer, TriCyt2
Descriptor: FE (II) ION, HEME C, SULFATE ION, ...
Authors:Tezcan, F.A, Kakkis, A.
Deposit date:2020-05-13
Release date:2020-09-16
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Metal-Templated Design of Chemically Switchable Protein Assemblies with High-Affinity Coordination Sites.
Angew.Chem.Int.Ed.Engl., 59, 2020
6WZ3
DownloadVisualize
BU of 6wz3 by Molmil
Cu-bound structure of the engineered protein trimer, TriCyt3
Descriptor: CHLORIDE ION, COPPER (II) ION, DI(HYDROXYETHYL)ETHER, ...
Authors:Tezcan, F.A, Kakkis, A.
Deposit date:2020-05-13
Release date:2020-09-16
Last modified:2024-11-20
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Metal-Templated Design of Chemically Switchable Protein Assemblies with High-Affinity Coordination Sites.
Angew.Chem.Int.Ed.Engl., 59, 2020

237992

數據於2025-06-25公開中

PDB statisticsPDBj update infoContact PDBjnumon