PDB: 45953 resultsInfo pagesStatus searchChemie searchBIRD

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6O1X	Structure of pCW3 conjugation coupling protein TcpA monomer form with ATPgS Descriptor: DNA translocase coupling protein, PHOSPHOTHIOPHOSPHORIC ACID-ADENYLATE ESTER, beta-D-glucopyranose Authors: Traore, D.A.K, Ahktar, N, Torres, V.T, Adams, V, Coulibaly, F, Panjikar, S, Caradoc-Davies, T.T, Rood, J.I, Whisstock, J.C. Deposit date: 2019-02-22 Release date: 2020-02-26 Last modified: 2023-10-11 Method: X-RAY DIFFRACTION (2.46 Å) Cite: Structure of pCW3 conjugation coupling protein TcpA To be published
1RTA	CRYSTAL STRUCTURE DISPOSITION OF THYMIDYLIC ACID TETRAMER IN COMPLEX WITH RIBONUCLEASE A Descriptor: DNA (5'-D(*TP*TP*TP*T)-3'), PROTEIN (RIBONUCLEASE A (E.C.3.1.27.5)) Authors: Birdsall, D.L, McPherson, A. Deposit date: 1992-08-28 Release date: 1993-10-31 Last modified: 2011-07-13 Method: X-RAY DIFFRACTION (2.5 Å) Cite: Crystal structure disposition of thymidylic acid tetramer in complex with ribonuclease A. J.Biol.Chem., 267, 1992
6JTQ	RVD HA specifically contacts 5mC through van der Waals interactions Descriptor: DNA (5'-D(*AP*GP*AP*GP*AP*CP*GP*CP*GP*AP*AP*GP*GP*GP*AP*CP*A)-3'), DNA (5'-D(*TP*GP*TP*CP*CP*CP*TP*TP*(5CM)P*GP*CP*GP*TP*CP*TP*CP*T)-3'), TAL effector Authors: Liu, L, Yi, C. Deposit date: 2019-04-11 Release date: 2020-04-15 Last modified: 2024-03-27 Method: X-RAY DIFFRACTION (2.48 Å) Cite: RVD HA specifically contacts 5mC through van der Waals interactions To Be Published
3WTP	Crystal Structure of the heterotypic nucleosome containing human CENP-A and H3.3 Descriptor: DNA (146-MER), Histone H2A type 1-B/E, Histone H2B type 1-J, ... Authors: Arimura, Y, Shirayama, K, Horikoshi, N, Fujita, R, Kagawa, W, Fukagawa, T, Almouzni, G, Kurumizaka, H. Deposit date: 2014-04-14 Release date: 2014-12-03 Last modified: 2023-11-08 Method: X-RAY DIFFRACTION (2.67 Å) Cite: Crystal structure and stable property of the cancer-associated heterotypic nucleosome containing CENP-A and H3.3 Sci Rep, 4, 2014
7PNG	Solution structure of 1:1 complex of an indoloquinoline derivative SYUIQ-5 to parallel quadruplex-duplex (Q-D) hybrid Descriptor: DNA (37-MER), ~{N}-(5~{H}-indolo[3,2-b]quinolin-11-yl)-~{N}',~{N}'-dimethyl-propane-1,3-diamine Authors: Vianney, Y.M, Weisz, K. Deposit date: 2021-09-06 Release date: 2021-12-29 Last modified: 2024-06-19 Method: SOLUTION NMR Cite: Indoloquinoline Ligands Favor Intercalation at Quadruplex-Duplex Interfaces. Chemistry, 28, 2022
3WA9	The nucleosome containing human H2A.Z.1 Descriptor: DNA (146-MER), Histone H2A.Z, Histone H2B type 1-J, ... Authors: Horikoshi, N, Sato, K, Shimada, K, Arimura, Y, Osakabe, A, Tachiwana, H, Iwasaki, W, Kagawa, W, Harata, M, Kimura, H, Kurumizaka, H. Deposit date: 2013-04-30 Release date: 2013-12-18 Last modified: 2023-11-08 Method: X-RAY DIFFRACTION (3.07 Å) Cite: Structural polymorphism in the L1 loop regions of human H2A.Z.1 and H2A.Z.2 Acta Crystallogr.,Sect.D, 69, 2013
3OWT	Crystal structure of S. cerevisiae RAP1-Sir3 complex Descriptor: DNA-binding protein RAP1, Regulatory protein SIR3 Authors: Chen, Y, Yang, Y, Lei, M. Deposit date: 2010-09-20 Release date: 2011-01-12 Last modified: 2023-09-06 Method: X-RAY DIFFRACTION (2 Å) Cite: A conserved motif within RAP1 has diversified roles in telomere protection and regulation in different organisms. Nat.Struct.Mol.Biol., 18, 2011
2LE6	Structure of a dimeric all-parallel-stranded G-quadruplex stacked via the 5'-to-5' interface Descriptor: DNA (5'-D(*GP*IP*GP*TP*GP*GP*GP*TP*GP*GP*GP*TP*GP*GP*GP*T)-3') Authors: Do, N.Q, Lim, K.W, Teo, M.H, Heddi, B, Phan, A.T. Deposit date: 2011-06-10 Release date: 2011-08-31 Last modified: 2024-05-15 Method: SOLUTION NMR Cite: Stacking of G-quadruplexes: NMR structure of a G-rich oligonucleotide with potential anti-HIV and anticancer activity Nucleic Acids Res., 2011
8KF9	Stable G-quadruplex Conformation Formed in Promoter Region of Oncogene RET in 50 mM K+ solution Descriptor: DNA (5'-D(*GP*GP*GP*TP*AP*GP*GP*GP*GP*CP*GP*GP*GP*GP*CP*GP*GP*GP*GP*CP*G)-3') Authors: Zhang, Y.P, Lan, W.X, Yin, S.W, Liu, Z.J, Xue, H.J, Cao, C.Y. Deposit date: 2023-08-15 Release date: 2024-09-04 Method: SOLUTION NMR Cite: Stable G-quadruplex Conformation Formed in Promoter Region of Oncogene RET Indicates New Target for Anti-cancer Drug Screening To Be Published
1RCN	CRYSTAL STRUCTURE OF THE RIBONUCLEASE A D(APTPAPAPG) COMPLEX : DIRECT EVIDENCE FOR EXTENDED SUBSTRATE RECOGNITION Descriptor: DNA (5'-D(*AP*TP*AP*A)-3'), PROTEIN (RIBONUCLEASE A (E.C.3.1.27.5)) Authors: Fontecilla-Camps, J.C, De Llorens, R, Le Du, M.H, Cuchillo, C.M. Deposit date: 1994-05-27 Release date: 1994-09-30 Last modified: 2011-07-13 Method: X-RAY DIFFRACTION (2.32 Å) Cite: Crystal structure of ribonuclease A.d(ApTpApApG) complex. Direct evidence for extended substrate recognition. J.Biol.Chem., 269, 1994
1TUE	The X-ray Structure of the Papillomavirus Helicase in Complex with its Molecular Matchmaker E2 Descriptor: Regulatory protein E2, Replication protein E1 Authors: Abbate, E.A, Berger, J.M, Botchan, M.R. Deposit date: 2004-06-24 Release date: 2004-08-24 Last modified: 2024-02-14 Method: X-RAY DIFFRACTION (2.1 Å) Cite: The X-ray structure of the papillomavirus helicase in complex with its molecular matchmaker E2 Genes Dev., 18, 2004
7FGT	Discovery of DS15060524; Gene targeting chimera (GeneTAC) for the treatment of Friedreich's Ataxia (FRDA) Descriptor: DNA (5'-D(*AP*AP*GP*AP*AP*GP*AP*AP*G)-3'), DNA (5'-D(*CP*TP*TP*CP*TP*TP*CP*TP*T)-3'), ~{N}-[3-[3-(dimethylamino)propylamino]-3-oxidanylidene-propyl]-1-methyl-4-[3-[[1-methyl-4-[[1-methyl-4-[3-[[1-methyl-4-[(1-methylimidazol-2-yl)carbonylamino]pyrrol-2-yl]carbonylamino]propanoylamino]imidazol-2-yl]carbonylamino]pyrrol-2-yl]carbonylamino]propanoylamino]imidazole-2-carboxamide Authors: Takase, N, Kawai, G, Igarashi, W, Katagiri, T. Deposit date: 2021-07-28 Release date: 2022-08-03 Last modified: 2024-05-15 Method: SOLUTION NMR Cite: Discovery of DS15060524; Gene targeting chimera (GeneTAC) for the treatment of Friedreich's Ataxia (FRDA) To be published
8R6H	A quadruplex-duplex hybrid with a three-layered hybrid-2 G-quadruplex topology complexed with Phen-DC3 Descriptor: DNA (34-MER), N2,N9-bis(1-methylquinolin-3-yl)-1,10-phenanthroline-2,9-dicarboxamide Authors: Vianney, Y.M, Weisz, K. Deposit date: 2023-11-22 Release date: 2024-03-06 Last modified: 2024-07-10 Method: SOLUTION NMR Cite: Structural Differences at Quadruplex-Duplex Interfaces Enable Ligand-Induced Topological Transitions. Adv Sci, 11, 2024
8J9Z	cryo-EM structure of viral topoisomerase in conformation 2 Descriptor: DNA topoisomerase 2 Authors: Deng, Z. Deposit date: 2023-05-05 Release date: 2023-08-16 Last modified: 2023-11-29 Method: ELECTRON MICROSCOPY (3.13 Å) Cite: Cryo-EM structures of African swine fever virus topoisomerase. Mbio, 14, 2023
8J9Y	cryo-EM structure of viral topoisomerase in conformation 1 Descriptor: DNA topoisomerase 2 Authors: Deng, Z. Deposit date: 2023-05-05 Release date: 2023-08-16 Last modified: 2023-11-29 Method: ELECTRON MICROSCOPY (3.16 Å) Cite: Cryo-EM structures of African swine fever virus topoisomerase. Mbio, 14, 2023
1RBJ	RIBONUCLEASE B COMPLEX WITH D(TETRA-(DEOXY-ADENYLATE)) Descriptor: DNA (5'-D(*AP*AP*AP*A)-3'), PROTEIN (RIBONUCLEASE B (E.C.3.1.27.5)) Authors: Ko, T.-P, Williams, R, McPherson, A. Deposit date: 1995-05-22 Release date: 1995-12-07 Last modified: 2018-04-18 Method: X-RAY DIFFRACTION (2.7 Å) Cite: Structure of a ribonuclease B+d(pA)4 complex. Acta Crystallogr.,Sect.D, 52, 1996
2KP4	Structure of 2'F-ANA/RNA hybrid duplex Descriptor: DNA (5'-D(*(GFL)P*(CFL)P*(TAF)P*(A5L)P*(TAF)P*(A5L)P*(A5L)P*(TAF)P*(GFL)P*(GFL))-3'), RNA (5'-R(*CP*CP*AP*UP*UP*AP*UP*AP*GP*C)-3') Authors: Gonzalez, C, Martin-Pintado, N, Watts, J, Gomez-Pinto, I, Dhama, M, Orozco, M, Schwartzentruber, J, Portella, G. Deposit date: 2009-10-06 Release date: 2010-02-09 Last modified: 2024-05-22 Method: SOLUTION NMR Cite: Differential stability of 2'F-ANA*RNA and ANA*RNA hybrid duplexes: roles of structure, pseudohydrogen bonding, hydration, ion uptake and flexibility. Nucleic Acids Res., 38, 2010
8KFL	Stable G-quadruplex Conformation Formed in Promoter Region of Oncogene RET in 100 mM Na+ Descriptor: DNA (5'-D(*GP*GP*GP*TP*AP*GP*GP*GP*GP*CP*GP*GP*GP*GP*CP*GP*GP*GP*GP*CP*G)-3') Authors: Zhang, Y.P, Lan, W.X, Yin, S.W, Liu, Z.J, Xue, H.J, Cao, C.Y. Deposit date: 2023-08-15 Release date: 2024-09-04 Method: SOLUTION NMR Cite: Stable G-quadruplex Conformation Formed in Promoter Region of Oncogene RET Indicates New Target for Anti-cancer Drug Screening To Be Published
6AIG	Crystal structure of PCNA1 from Aeropyrum pernix Descriptor: DNA polymerase sliding clamp 1 Authors: Yamauchi, T, Kikuchi, M, Tsunoda, M. Deposit date: 2018-08-23 Release date: 2018-09-26 Last modified: 2023-11-29 Method: X-RAY DIFFRACTION (2 Å) Cite: Crystal structure of PCNA1 from Aeropyrum pernix To Be Published
2MC4	The solution structure of the C-terminal domain of BldD from Streptomyces coelicolor Descriptor: DNA binding protein Authors: Kim, J.M, Won, H.S, Kang, S.O. Deposit date: 2013-08-14 Release date: 2013-12-04 Last modified: 2024-05-15 Method: SOLUTION NMR Cite: The solution structure of the C-terminal domain of BldD from Streptomyces coelicolor To be Published
5B40	The nucleosome structure containing H2B-K120 and H4-K31 monoubiquitinations Descriptor: DNA (146-MER), Histone H2A type 1-B/E, Histone H2B type 1-J, ... Authors: Machida, S, Sekine, S, Nishiyama, Y, Horikoshi, N, Kurumizaka, H. Deposit date: 2016-03-22 Release date: 2016-06-22 Last modified: 2023-11-08 Method: X-RAY DIFFRACTION (3.33 Å) Cite: Monoubiquitination of histones H2B and H4 changes the nucleosome stability without affecting the nucleosome structure To Be Published
7OUG	STLV-1 intasome:B56 in complex with the strand-transfer inhibitor raltegravir Descriptor: DNA (5'-D(*AP*CP*TP*GP*TP*GP*TP*TP*TP*GP*GP*CP*GP*CP*TP*TP*CP*TP*CP*TP*C)-3'), DNA (5'-D(*GP*AP*GP*AP*GP*AP*AP*GP*CP*GP*CP*CP*AP*AP*AP*CP*AP*CP*A)-3'), Integrase, ... Authors: Barski, M.S, Ballandras-Colas, A, Cronin, N.B, Pye, V.E, Cherepanov, P, Maertens, G.N. Deposit date: 2021-06-11 Release date: 2021-08-18 Last modified: 2024-07-17 Method: ELECTRON MICROSCOPY (3.1 Å) Cite: Structural basis for the inhibition of HTLV-1 integration inferred from cryo-EM deltaretroviral intasome structures. Nat Commun, 12, 2021
3AV0	Crystal structure of Mre11-Rad50 bound to ATP S Descriptor: DNA double-strand break repair protein mre11, DNA double-strand break repair rad50 ATPase, GLYCEROL, ... Authors: Lim, H.S, Kim, J.S, Cho, Y. Deposit date: 2011-02-18 Release date: 2011-05-25 Last modified: 2023-11-01 Method: X-RAY DIFFRACTION (3.1 Å) Cite: Crystal Structure of the Mre11-Rad50-ATP S Complex: Understanding the Interplay between Mre11 and Rad50 To be Published
5XPA	Crystal structure of T. thermophilus Argonaute protein complexed with a bulge 9'U10' on the target strand Descriptor: DNA (5'-D(P*TP*GP*AP*GP*GP*TP*AP*GP*TP*AP*GP*GP*TP*TP*GP*TP*AP*TP*AP*GP*T)-3'), MAGNESIUM ION, RNA (5'-R(P*AP*UP*AP*CP*AP*AP*CP*CP*GP*UP*UP*CP*UP*AP*CP*UP*CP*CP*G)-3'), ... Authors: Sheng, G, Gogakos, T, Wang, J, Zhao, H, Serganov, A, Juranek, S, Tuschl, T, Patel, J.D, Wang, Y. Deposit date: 2017-06-01 Release date: 2018-04-18 Last modified: 2023-11-22 Method: X-RAY DIFFRACTION (2.9 Å) Cite: Structure/cleavage-based insights into helical perturbations at bulge sites within T. thermophilus Argonaute silencing complexes. Nucleic Acids Res., 45, 2017
5B1M	The mouse nucleosome structure containing H3.1 Descriptor: DNA (146-MER), Histone H2A type 1, Histone H2B type 3-A, ... Authors: Urahama, T, Machida, S, Horikoshi, N, Osakabe, A, Tachiwana, H, Taguchi, H, Kurumizaka, H. Deposit date: 2015-12-08 Release date: 2017-02-15 Last modified: 2023-11-08 Method: X-RAY DIFFRACTION (2.34 Å) Cite: Testis-Specific Histone Variant H3t Gene Is Essential for Entry into Spermatogenesis Cell Rep, 18, 2017

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