PDB: 13413 resultsInfo pagesStatus searchChemie searchBIRD

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5IP7	Structure of RNA Polymerase II-Tfg1 peptide complex Descriptor: DNA-directed RNA polymerase II subunit RPB1, DNA-directed RNA polymerase II subunit RPB11, DNA-directed RNA polymerase II subunit RPB2, ... Authors: Plaschka, C, Hantsche, M, Dienemann, C, Burzinski, C, Plitzko, J, Cramer, P. Deposit date: 2016-03-09 Release date: 2016-05-11 Last modified: 2024-01-10 Method: X-RAY DIFFRACTION (3.52 Å) Cite: Transcription initiation complex structures elucidate DNA opening. Nature, 533, 2016
6RIE	Structure of Vaccinia Virus DNA-dependent RNA polymerase co-transcriptional capping complex Descriptor: DNA-dependent RNA polymerase subunit rpo132, DNA-dependent RNA polymerase subunit rpo147, DNA-dependent RNA polymerase subunit rpo18, ... Authors: Hillen, H.S, Bartuli, J, Grimm, C, Dienemann, C, Bedenk, K, Szalar, A, Fischer, U, Cramer, P. Deposit date: 2019-04-23 Release date: 2019-12-18 Last modified: 2019-12-25 Method: ELECTRON MICROSCOPY (3.1 Å) Cite: Structural Basis of Poxvirus Transcription: Transcribing and Capping Vaccinia Complexes. Cell, 179, 2019
5C0X	Structure of a 12-subunit nuclear exosome complex bound to structured RNA Descriptor: Exosome complex component CSL4, Exosome complex component MTR3, Exosome complex component RRP4, ... Authors: Makino, D.L, Conti, E. Deposit date: 2015-06-12 Release date: 2015-08-05 Last modified: 2024-01-10 Method: X-RAY DIFFRACTION (3.812 Å) Cite: RNA degradation paths in a 12-subunit nuclear exosome complex. Nature, 524, 2015
5C0W	Structure of a 12-subunit nuclear exosome complex bound to single-stranded RNA substrates Descriptor: Exosome complex component CSL4, Exosome complex component MTR3, Exosome complex component RRP4, ... Authors: Makino, D.L, Conti, E. Deposit date: 2015-06-12 Release date: 2015-07-29 Last modified: 2024-01-10 Method: X-RAY DIFFRACTION (4.6 Å) Cite: RNA degradation paths in a 12-subunit nuclear exosome complex. Nature, 524, 2015
6SZU	Bat Influenza A polymerase pre-termination complex with pyrophosphate using 44-mer vRNA template with mutated oligo(U) sequence Descriptor: 5-oxidanyl-4-oxidanylidene-1-[(1-pyrrolo[2,3-b]pyridin-1-ylcyclopentyl)methyl]pyridine-3-carboxylic acid, MAGNESIUM ION, PYROPHOSPHATE 2-, ... Authors: Wandzik, J.M, Kouba, T, Cusack, S. Deposit date: 2019-10-02 Release date: 2020-04-15 Last modified: 2024-05-22 Method: ELECTRON MICROSCOPY (2.41 Å) Cite: A Structure-Based Model for the Complete Transcription Cycle of Influenza Polymerase. Cell, 181, 2020
6T0S	Bat Influenza A polymerase stuttering complex using 44-mer vRNA template with intact oligo(U) sequence Descriptor: MAGNESIUM ION, Polymerase acidic protein, Polymerase basic protein 2, ... Authors: Wandzik, J.M, Kouba, T, Cusack, S. Deposit date: 2019-10-03 Release date: 2020-04-15 Last modified: 2024-05-22 Method: ELECTRON MICROSCOPY (3.04 Å) Cite: A Structure-Based Model for the Complete Transcription Cycle of Influenza Polymerase. Cell, 181, 2020
6TW1	Bat Influenza A polymerase termination complex with pyrophosphate using 44-mer vRNA template with mutated oligo(U) sequence Descriptor: 5-oxidanyl-4-oxidanylidene-1-[(1-pyrrolo[2,3-b]pyridin-1-ylcyclopentyl)methyl]pyridine-3-carboxylic acid, MAGNESIUM ION, PYROPHOSPHATE 2-, ... Authors: Wandzik, J.M, Kouba, T, Cusack, S. Deposit date: 2020-01-11 Release date: 2020-04-15 Last modified: 2024-05-22 Method: ELECTRON MICROSCOPY (2.7 Å) Cite: A Structure-Based Model for the Complete Transcription Cycle of Influenza Polymerase. Cell, 2020
6T2C	Bat Influenza A polymerase recycling complex Descriptor: MAGNESIUM ION, Polymerase acidic protein, Polymerase basic protein 2, ... Authors: Wandzik, J.M, Kouba, T, Cusack, S. Deposit date: 2019-10-08 Release date: 2020-04-15 Last modified: 2024-05-22 Method: ELECTRON MICROSCOPY (3.52 Å) Cite: A Structure-Based Model for the Complete Transcription Cycle of Influenza Polymerase. Cell, 181, 2020
6T0N	Bat Influenza A polymerase pre-initiation complex Descriptor: 3' vRNA, 5' vRNA, MAGNESIUM ION, ... Authors: Wandzik, J.M, Kouba, T, Cusack, S. Deposit date: 2019-10-03 Release date: 2020-04-15 Last modified: 2024-05-22 Method: ELECTRON MICROSCOPY (2.54 Å) Cite: A Structure-Based Model for the Complete Transcription Cycle of Influenza Polymerase. Cell, 181, 2020
6TU5	Influenza A/H7N9 polymerase core (apo) Descriptor: MAGNESIUM ION, Polymerase acidic protein, Polymerase basic protein 2, ... Authors: Cusack, S, Pflug, A. Deposit date: 2020-01-02 Release date: 2020-04-15 Last modified: 2024-01-24 Method: X-RAY DIFFRACTION (3.325 Å) Cite: A Structure-Based Model for the Complete Transcription Cycle of Influenza Polymerase. Cell, 181, 2020
5MS0	pseudo-atomic model of the RNA polymerase lambda-based antitermination complex solved by cryo-EM Descriptor: 30S ribosomal protein S10, Antitermination protein N, DNA-directed RNA polymerase subunit alpha, ... Authors: Said, N, Krupp, F. Deposit date: 2016-12-29 Release date: 2017-05-03 Last modified: 2024-05-15 Method: ELECTRON MICROSCOPY (9.8 Å) Cite: Structural basis for lambda N-dependent processive transcription antitermination. Nat Microbiol, 2, 2017
5U5Q	12 Subunit RNA Polymerase II at Room Temperature collected using SFX Descriptor: DNA-directed RNA polymerase II subunit RPB1, DNA-directed RNA polymerase II subunit RPB11, DNA-directed RNA polymerase II subunit RPB2, ... Authors: Bushnell, D.A, Oberthur, D, Mariani, V, Yefanov, O, Tolstikova, A, Barty, A. Deposit date: 2016-12-07 Release date: 2017-03-29 Last modified: 2019-11-27 Method: X-RAY DIFFRACTION (3.8 Å) Cite: Double-flow focused liquid injector for efficient serial femtosecond crystallography. Sci Rep, 7, 2017
6GOV	Structure of THE RNA POLYMERASE LAMBDA-BASED ANTITERMINATION COMPLEX Descriptor: 30S ribosomal protein S10, Antitermination protein N, DNA (I), ... Authors: Loll, B, Krupp, F, Said, N, Huang, Y, Buerger, J, Mielke, T, Spahn, C.M.T, Wahl, M.C. Deposit date: 2018-06-04 Release date: 2019-02-13 Last modified: 2019-12-18 Method: ELECTRON MICROSCOPY (3.7 Å) Cite: Structural Basis for the Action of an All-Purpose Transcription Anti-termination Factor. Mol.Cell, 74, 2019
3I4M	8-oxoguanine containing RNA polymerase II elongation complex D Descriptor: DNA (5'-D(*AP*G*CP*TP*CP*AP*AP*GP*TP*AP*CP*TP*TP*AP*(8OG)P*GP*CP*CP*(BRU)P*GP*GP*TP*CP*AP*TP*T)-3'), DNA (5'-D(*AP*GP*TP*AP*CP*TP*TP*GP*AP*GP*CP*T)-3'), DNA-directed RNA polymerase II subunit RPB1, ... Authors: Damsma, G.E, Cramer, P. Deposit date: 2009-07-02 Release date: 2009-09-08 Last modified: 2023-11-01 Method: X-RAY DIFFRACTION (3.7 Å) Cite: Molecular basis of transcriptional mutagenesis at 8-oxoguanine J.Biol.Chem., 284, 2009
5MSG	Influenza B polymerase bound to vRNA promoter and capped RNA primer Descriptor: PHOSPHATE ION, Polymerase acidic protein, Polymerase basic protein 2, ... Authors: Cusack, S, Guilligay, D. Deposit date: 2017-01-04 Release date: 2017-02-08 Last modified: 2024-03-06 Method: X-RAY DIFFRACTION (3.8 Å) Cite: An in vitro fluorescence based study of initiation of RNA synthesis by influenza B polymerase. Nucleic Acids Res., 45, 2017
3I4N	8-oxoguanine containing RNA polymerase II elongation complex E Descriptor: DNA (5'-D(*AP*G*CP*TP*CP*AP*AP*GP*TP*AP*CP*TP*TP*AP*(8OG)P*GP*CP*CP*(BRU)P*GP*GP*TP*CP*AP*TP*T)-3'), DNA (5'-D(*AP*GP*TP*AP*CP*TP*TP*GP*AP*GP*CP*T)-3'), DNA-directed RNA polymerase II subunit RPB1, ... Authors: Damsma, G.E, Cramer, P. Deposit date: 2009-07-02 Release date: 2009-09-08 Last modified: 2023-11-01 Method: X-RAY DIFFRACTION (3.9 Å) Cite: Molecular basis of transcriptional mutagenesis at 8-oxoguanine J.Biol.Chem., 284, 2009
5D4C	Crystal structure of Thermus thermophilus product complex for transcription initiation with ATP and CTP Descriptor: ADENOSINE-5'-TRIPHOSPHATE, CYTIDINE-5'-MONOPHOSPHATE, CYTIDINE-5'-TRIPHOSPHATE, ... Authors: Zhang, Y, Ebright, R.H. Deposit date: 2015-08-07 Release date: 2016-07-06 Last modified: 2024-07-03 Method: X-RAY DIFFRACTION (3.28 Å) Cite: The mechanism of RNA 5' capping with NAD(+), NADH and desphospho-CoA. Nature, 535, 2016
5D4E	Crystal structure of Thermus thermophilus product complex for transcription initiation with 3'-dephosphate-CoA and CTP Descriptor: CYTIDINE-5'-MONOPHOSPHATE, DEPHOSPHO COENZYME A, DIPHOSPHATE, ... Authors: Zhang, Y, Ebright, R.H. Deposit date: 2015-08-07 Release date: 2016-07-06 Last modified: 2024-07-03 Method: X-RAY DIFFRACTION (3.08 Å) Cite: The mechanism of RNA 5' capping with NAD(+), NADH and desphospho-CoA. Nature, 535, 2016
5D4D	Crystal structure of Thermus thermophilus product complex for transcription initiation with NAD and CTP Descriptor: ADENOSINE MONOPHOSPHATE, CYTIDINE-5'-MONOPHOSPHATE, CYTIDINE-5'-TRIPHOSPHATE, ... Authors: Zhang, Y, Ebright, R.H. Deposit date: 2015-08-07 Release date: 2016-07-06 Last modified: 2024-05-29 Method: X-RAY DIFFRACTION (3 Å) Cite: The mechanism of RNA 5' capping with NAD(+), NADH and desphospho-CoA. Nature, 535, 2016
6RIC	Structure of the core Vaccinia Virus DNA-dependent RNA polymerase complex Descriptor: DNA-dependent RNA polymerase subunit rpo132, DNA-dependent RNA polymerase subunit rpo147, DNA-dependent RNA polymerase subunit rpo18, ... Authors: Grimm, C, Hillen, H.S, Bedenk, K, Bartuli, J, Neyer, S, Zhang, Q, Huettenhofer, A, Erlacher, M, Dienemann, C, Schlosser, A, Urlaub, H, Boettcher, B, Szalay, A, Cramer, P, Fischer, U. Deposit date: 2019-04-23 Release date: 2019-12-18 Last modified: 2019-12-25 Method: ELECTRON MICROSCOPY (2.8 Å) Cite: Structural Basis of Poxvirus Transcription: Transcribing and Capping Vaccinia Complexes. Cell, 179, 2019
5TBZ	E. Coli RNA Polymerase complexed with NusG Descriptor: DNA-directed RNA polymerase subunit alpha, DNA-directed RNA polymerase subunit beta, DNA-directed RNA polymerase subunit beta', ... Authors: Liu, B, Steitz, T.A. Deposit date: 2016-09-13 Release date: 2016-12-07 Last modified: 2019-12-25 Method: X-RAY DIFFRACTION (7 Å) Cite: Structural insights into NusG regulating transcription elongation. Nucleic Acids Res., 45, 2017
7QXI	Cryo-EM structure of RNA polymerase-sigma54 holo enzyme with promoter DNA closed complex Descriptor: DNA-directed RNA polymerase subunit alpha, DNA-directed RNA polymerase subunit beta, DNA-directed RNA polymerase subunit beta', ... Authors: Ye, F.Z, Zhang, X.D. Deposit date: 2022-01-26 Release date: 2022-11-09 Last modified: 2024-07-17 Method: ELECTRON MICROSCOPY (3.4 Å) Cite: Mechanisms of DNA opening revealed in AAA+ transcription complex structures. Sci Adv, 8, 2022
6KUR	Structure of influenza D virus polymerase bound to vRNA promoter in Mode B conformation (Class B1) Descriptor: 3'-vRNA, 5'-vRNA, Polymerase 3, ... Authors: Peng, Q, Peng, R, Qi, J, Gao, G.F, Shi, Y. Deposit date: 2019-09-02 Release date: 2019-10-02 Last modified: 2024-03-27 Method: ELECTRON MICROSCOPY (3.7 Å) Cite: Structural insight into RNA synthesis by influenza D polymerase. Nat Microbiol, 4, 2019
6KUK	Structure of influenza D virus polymerase bound to vRNA promoter in mode A conformation (class A1) Descriptor: 3'-vRNA, 5'-vRNA, Polymerase 3, ... Authors: Peng, Q, Peng, R, Qi, J, Gao, G.F, Shi, Y. Deposit date: 2019-09-02 Release date: 2019-10-02 Last modified: 2024-03-27 Method: ELECTRON MICROSCOPY (3.9 Å) Cite: Structural insight into RNA synthesis by influenza D polymerase. Nat Microbiol, 4, 2019
6KUP	Structure of influenza D virus polymerase bound to vRNA promoter in Mode A conformation(Class A2) Descriptor: 3'-vRNA, 5'-vRNA, Polymerase 3, ... Authors: Peng, Q, Peng, R, Qi, J, Gao, G.F, Shi, Y. Deposit date: 2019-09-02 Release date: 2019-10-02 Last modified: 2024-03-27 Method: ELECTRON MICROSCOPY (4.3 Å) Cite: Structural insight into RNA synthesis by influenza D polymerase. Nat Microbiol, 4, 2019

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