8-oxoguanine containing RNA polymerase II elongation complex E

Summary for 3I4N

DescriptorDNA-directed RNA polymerase II subunit RPB1, DNA-directed RNA polymerase II subunit RPB2, DNA-directed RNA polymerase II subunit RPB3, ... (17 entities in total)
Functional Keywordsrna polymerase ii, metal-binding, transcription bubble, elongation complex, transcription, 8-oxoguanine, dna damage, oxidative damage, dna-binding, dna-directed rna polymerase, isopeptide bond, magnesium, nucleotidyltransferase, nucleus, phosphoprotein, transferase, zinc-finger, dna repair, mrna processing, transferase-dna-rna hybrid complex, transferase/dna-rna hybrid
Biological sourceSaccharomyces cerevisiae (baker's yeast)
Cellular locationNucleus P04050 P08518 P16370 P20433 P20434 P34087 P20436 P27999 P38902
Cytoplasm P20435
Nucleus, nucleolus P22139 P40422
Total number of polymer chains15
Total molecular weight532306.12
Damsma, G.E.,Cramer, P. (deposition date: 2009-07-02, release date: 2009-09-08, Last modification date: 2013-01-16)
Primary citation
Damsma, G.E.,Cramer, P.
Molecular basis of transcriptional mutagenesis at 8-oxoguanine
J.Biol.Chem., 284:31658-31663, 2009
PubMed: 19758983 (PDB entries with the same primary citation)
DOI: 10.1074/jbc.M109.022764
MImport into Mendeley
Experimental method

Structure validation

RfreeClashscoreRamachandran outliersSidechain outliersRSRZ outliersRNA backbone 0.25369 12.8% 9.1% 0.9% 0.51MetricValuePercentile RanksWorseBetterPercentile relative to all X-ray structuresPercentile relative to X-ray structures of similar resolution
Download full validation reportDownload
PDB entries from 2020-10-21