Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

5V4G
DownloadVisualize
BU of 5v4g by Molmil
Ruthenium(II)(cymene)(chlorido)2-lysozyme adduct with two binding sites
Descriptor: Lysozyme C, PARA-CYMENE RUTHENIUM CHLORIDE, SODIUM ION
Authors:Sullivan, M.P, Hartinger, C.G, Goldstone, D.C.
Deposit date:2017-03-09
Release date:2017-04-05
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (1.2 Å)
Cite:The metalation of hen egg white lysozyme impacts protein stability as shown by ion mobility mass spectrometry, differential scanning calorimetry, and X-ray crystallography.
Chem. Commun. (Camb.), 53, 2017
6KZQ
DownloadVisualize
BU of 6kzq by Molmil
structure of PTP-MEG2 and NSF-pY83 peptide complex
Descriptor: NSF-pY83 peptide, Tyrosine-protein phosphatase non-receptor type 9
Authors:Xu, Y.F, Chen, X, Yu, X, Sun, J.P.
Deposit date:2019-09-25
Release date:2020-09-30
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:PTP-MEG2 regulates quantal size and fusion pore opening through two distinct structural bases and substrates.
Embo Rep., 22, 2021
5VGE
DownloadVisualize
BU of 5vge by Molmil
Crystal structure of HLA-C*07:02 in complex with RYR peptide
Descriptor: ARG-TYR-ARG-PRO-GLY-THR-VAL-ALA-LEU, Beta-2-microglobulin, ZINC ION, ...
Authors:Mobbs, J.I, Vivian, J.P, Gras, S, Rossjohn, J.
Deposit date:2017-04-11
Release date:2017-06-07
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Structural and regulatory diversity shape HLA-C protein expression levels.
Nat Commun, 8, 2017
6L03
DownloadVisualize
BU of 6l03 by Molmil
structure of PTP-MEG2 and MUNC18-1-pY145 peptide complex
Descriptor: Tyrosine-protein phosphatase non-receptor type 9, stxbp1-pY145 peptide
Authors:Xu, Y.F, Chen, X, Yu, X, Sun, J.P.
Deposit date:2019-09-25
Release date:2020-09-30
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.084 Å)
Cite:PTP-MEG2 regulates quantal size and fusion pore opening through two distinct structural bases and substrates.
Embo Rep., 22, 2021
4H2S
DownloadVisualize
BU of 4h2s by Molmil
Crystal structure of Bradyrhizobium japonicum glycine:[carrier protein] ligase complexed with cognate carrier protein and AMP
Descriptor: 4'-PHOSPHOPANTETHEINE, ACETATE ION, ADENOSINE MONOPHOSPHATE, ...
Authors:Luic, M, Weygand-Durasevic, I, Ivic, N, Mocibob, M.
Deposit date:2012-09-13
Release date:2013-03-06
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:Adaptation of aminoacyl-tRNA synthetase catalytic core to carrier protein aminoacylation.
Structure, 21, 2013
8X1V
DownloadVisualize
BU of 8x1v by Molmil
NMR structure of a bimolecular parallel G-quadruplex formed by AAGGG repeats from pathogenic RFC1 gene
Descriptor: DNA (5'-D(*AP*AP*GP*GP*GP*AP*AP*GP*GP*GP*AP*A)-3')
Authors:Wang, Y, Guo, P, Han, D.
Deposit date:2023-11-08
Release date:2024-01-17
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Structural investigation of pathogenic RFC1 AAGGG pentanucleotide repeats reveals a role of G-quadruplex in dysregulated gene expression in CANVAS.
Nucleic Acids Res., 52, 2024
4H2X
DownloadVisualize
BU of 4h2x by Molmil
Crystal structure of engineered Bradyrhizobium japonicum glycine:[carrier protein] ligase complexed with carrier protein from Agrobacterium tumefaciens and an analogue of glycyl adenylate
Descriptor: 4'-PHOSPHOPANTETHEINE, 5'-O-(glycylsulfamoyl)adenosine, Amino acid--[acyl-carrier-protein] ligase 1, ...
Authors:Luic, M, Weygand-Durasevic, I, Ivic, N, Mocibob, M.
Deposit date:2012-09-13
Release date:2013-03-06
Last modified:2017-08-23
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:Adaptation of aminoacyl-tRNA synthetase catalytic core to carrier protein aminoacylation.
Structure, 21, 2013
5VCC
DownloadVisualize
BU of 5vcc by Molmil
Crystal structure of human CYP3A4 bound to glycerol
Descriptor: 1,2-ETHANEDIOL, Cytochrome P450 3A4, GLYCEROL, ...
Authors:Sevrioukova, I.
Deposit date:2017-03-31
Release date:2017-05-31
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:High-Level Production and Properties of the Cysteine-Depleted Cytochrome P450 3A4.
Biochemistry, 56, 2017
5UJ5
DownloadVisualize
BU of 5uj5 by Molmil
Solution structure of the oxidized iron-sulfur protein adrenodoxin from Encephalitozoon cuniculi. Seattle Structural Genomics Center for Infectious Disease target EncuA.00705.a
Descriptor: Adrenodoxin, FE2/S2 (INORGANIC) CLUSTER
Authors:Buchko, G.W, Seattle Structural Genomics Center for Infectious Disease (SSGCID)
Deposit date:2017-01-17
Release date:2017-02-01
Last modified:2024-05-01
Method:SOLUTION NMR
Cite:Solution structure for an Encephalitozoon cuniculi adrenodoxin-like protein in the oxidized state.
Protein Sci., 29, 2020
4GYG
DownloadVisualize
BU of 4gyg by Molmil
Crystal structure of the Rio2 kinase from Chaetomium thermophilum
Descriptor: Rio2 kinase
Authors:Ferreira-Cerca, S, Sagar, V, Schafer, T, Diop, M, Wesseling, A.M, Lu, H, Chai, E, Hurt, E, LaRonde-LeBlanc, N.
Deposit date:2012-09-05
Release date:2012-10-17
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (2.482 Å)
Cite:ATPase-dependent role of the atypical kinase Rio2 on the evolving pre-40S ribosomal subunit.
Nat.Struct.Mol.Biol., 19, 2012
4ND3
DownloadVisualize
BU of 4nd3 by Molmil
Crystal structure of the lactate dehydrogenase from cryptosporidium parvum complexed with substrate (l-lactic acid) and cofactor (b-nicotinamide adenine dinucleotide)
Descriptor: (2S)-2-HYDROXYPROPANOIC ACID, GLYCEROL, Lactate dehydrogenase, ...
Authors:Chattopadhyay, D, Cook, W.J.
Deposit date:2013-10-25
Release date:2014-12-17
Last modified:2023-12-06
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:Biochemical and structural characterization of Cryptosporidium parvum Lactate dehydrogenase.
Int.J.Biol.Macromol., 74C, 2014
4H2U
DownloadVisualize
BU of 4h2u by Molmil
Crystal structure of Bradyrhizobium japonicum glycine:[carrier protein] ligase complexed with cognate carrier protein and ATP
Descriptor: 4'-PHOSPHOPANTETHEINE, ACETATE ION, ADENOSINE-5'-TRIPHOSPHATE, ...
Authors:Luic, M, Weygand-Durasevic, I, Ivic, N, Mocibob, M.
Deposit date:2012-09-13
Release date:2013-03-06
Last modified:2013-05-29
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Adaptation of aminoacyl-tRNA synthetase catalytic core to carrier protein aminoacylation.
Structure, 21, 2013
5V4B
DownloadVisualize
BU of 5v4b by Molmil
Crystal structure of the Skp1-FBXW7-DISC1 complex
Descriptor: DISC1 peptide, F-box/WD repeat-containing protein 7, IMIDAZOLE, ...
Authors:Li, Y, Baillie, G.S, Hao, B.
Deposit date:2017-03-08
Release date:2017-09-20
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:FBXW7 regulates DISC1 stability via the ubiquitin-proteosome system.
Mol. Psychiatry, 23, 2018
7VBQ
DownloadVisualize
BU of 7vbq by Molmil
Heterodimer structure of Fe(II)/(alpha)ketoglutarate-dependent dioxygenase TlxIJ
Descriptor: FE (III) ION, Fe(II)/(alpha)ketoglutarate-dependent dioxygenase TlxI, Fe(II)/(alpha)ketoglutarate-dependent dioxygenase TlxJ, ...
Authors:Li, X, Awakawa, T, Mori, T, Abe, I.
Deposit date:2021-09-01
Release date:2022-04-20
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Heterodimeric Non-heme Iron Enzymes in Fungal Meroterpenoid Biosynthesis.
J.Am.Chem.Soc., 143, 2021
7VBR
DownloadVisualize
BU of 7vbr by Molmil
Fe(II)/(alpha)ketoglutarate-dependent dioxygenase TlxI
Descriptor: Fe(II)/(alpha)ketoglutarate-dependent dioxygenase TlxI
Authors:Li, X, Awakawa, T, Mori, T, Abe, I.
Deposit date:2021-09-01
Release date:2022-04-20
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Heterodimeric Non-heme Iron Enzymes in Fungal Meroterpenoid Biosynthesis.
J.Am.Chem.Soc., 143, 2021
5VFM
DownloadVisualize
BU of 5vfm by Molmil
Crystal structure of BnSP-7 from Bothrops pauloensis complexed with p-coumaric acid
Descriptor: 1-ETHOXY-2-(2-METHOXYETHOXY)ETHANE, 4'-HYDROXYCINNAMIC ACID, Basic phospholipase A2 homolog BnSP-7, ...
Authors:De Lima, L.F.G, Fontes, M.R.M.
Deposit date:2017-04-08
Release date:2017-12-20
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (2.058 Å)
Cite:Structural studies with BnSP-7 reveal an atypical oligomeric conformation compared to phospholipases A2-like toxins.
Biochimie, 142, 2017
7UJA
DownloadVisualize
BU of 7uja by Molmil
Cryo-EM structure of Human respiratory syncytial virus F variant (construct pXCS847A)
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, AM14 Fab heavy chain, AM14 Fab light chain, ...
Authors:Lees, J.A, Ammirati, M, Han, S.
Deposit date:2022-03-30
Release date:2023-04-19
Last modified:2023-05-10
Method:ELECTRON MICROSCOPY (3.7 Å)
Cite:Rational design of a highly immunogenic prefusion-stabilized F glycoprotein antigen for a respiratory syncytial virus vaccine.
Sci Transl Med, 15, 2023
7UJ3
DownloadVisualize
BU of 7uj3 by Molmil
Crystal structure of Human respiratory syncytial virus F variant (construct pXCS847A)
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, RSV variant (construct pXCS847A) F1, RSV variant (construct pXCS847A) F2, ...
Authors:Han, S, Ammirati, M.
Deposit date:2022-03-30
Release date:2023-04-19
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (3.5 Å)
Cite:Rational design of a highly immunogenic prefusion-stabilized F glycoprotein antigen for a respiratory syncytial virus vaccine.
Sci Transl Med, 15, 2023
8X4F
DownloadVisualize
BU of 8x4f by Molmil
Solution NMR structure of a DNA hairpin formed by pure CTG repeats
Descriptor: DNA (5'-D(*GP*CP*TP*GP*CP*TP*GP*CP*TP*GP*CP*TP*GP*C)-3'), SODIUM ION
Authors:Guo, P, Wan, L, Han, D.
Deposit date:2023-11-15
Release date:2024-02-14
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:High-Resolution NMR Structures of Intrastrand Hairpins Formed by CTG Trinucleotide Repeats.
Acs Chem Neurosci, 15, 2024
5VGD
DownloadVisualize
BU of 5vgd by Molmil
Crystal Structure of HLA-C*0501 in complex with SAE
Descriptor: Beta-2-microglobulin, HLA class I histocompatibility antigen, Cw-5 alpha chain, ...
Authors:Gras, S, Rossjohn, J.
Deposit date:2017-04-11
Release date:2017-05-31
Last modified:2017-07-12
Method:X-RAY DIFFRACTION (2.32 Å)
Cite:Structural and regulatory diversity shape HLA-C protein expression levels.
Nat Commun, 8, 2017
4NYY
DownloadVisualize
BU of 4nyy by Molmil
Structure of Vibrio cholerae chitin de-N-acetylase in complex with acetate ion (ACT) in P 2 21 21
Descriptor: 1,2-ETHANEDIOL, ACETATE ION, Deacetylase DA1, ...
Authors:Albesa-Jove, D, Andres, E, Biarnes, X, Planas, A, Guerin, M.E.
Deposit date:2013-12-11
Release date:2014-08-13
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.65 Å)
Cite:Structural basis of chitin oligosaccharide deacetylation.
Angew.Chem.Int.Ed.Engl., 53, 2014
4ND2
DownloadVisualize
BU of 4nd2 by Molmil
Crystal structure of the lactate dehydrogenase from cryptosporidium parvum complexed with substrate (pyruvic acid) and cofactor analog (3-acetylpyridine adenine dinucleotide)
Descriptor: 3-ACETYLPYRIDINE ADENINE DINUCLEOTIDE, GLYCEROL, Lactate dehydrogenase, ...
Authors:Chattopadhyay, D, Cook, W.J.
Deposit date:2013-10-25
Release date:2014-12-17
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (2 Å)
Cite:Biochemical and structural characterization of Cryptosporidium parvum Lactate dehydrogenase.
Int.J.Biol.Macromol., 74C, 2014
8VSU
DownloadVisualize
BU of 8vsu by Molmil
Cryo-EM structure of LKB1-STRADalpha-MO25alpha heterocomplex
Descriptor: ADENOSINE-5'-DIPHOSPHATE, Calcium-binding protein 39, Isoform 3 of STE20-related kinase adapter protein alpha, ...
Authors:Chan, L.M, Courteau, B.J, Verba, K.A.
Deposit date:2024-01-24
Release date:2024-07-10
Last modified:2024-07-17
Method:ELECTRON MICROSCOPY (2.86 Å)
Cite:High-resolution single-particle imaging at 100-200 keV with the Gatan Alpine direct electron detector.
J.Struct.Biol., 216, 2024
4J9T
DownloadVisualize
BU of 4j9t by Molmil
Crystal structure of a putative, de novo designed unnatural amino acid dependent metalloprotein, northeast structural genomics consortium target OR61
Descriptor: ARSENIC, GLYCEROL, designed unnatural amino acid dependent metalloprotein
Authors:Forouhar, F, Lew, S, Seetharaman, J, Mills, J.H, Khare, S.D, Everett, J.K, Baker, D, Montelione, G.T, Hunt, J.F, Tong, L, Northeast Structural Genomics Consortium (NESG)
Deposit date:2013-02-17
Release date:2013-03-27
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Computational design of an unnatural amino Acid dependent metalloprotein with atomic level accuracy.
J.Am.Chem.Soc., 135, 2013
7TZD
DownloadVisualize
BU of 7tzd by Molmil
Solution NMR of the specialized apo-acyl carrier protein (RPA2022) from Rhodopseudomonas palustris, refined without RDCs. Northeast Structural Genomics Consortium Target RpR324
Descriptor: Specialized acyl carrier protein
Authors:Ramelot, T.A, Tejero, R, Montelione, G.T, Northeast Structural Genomics Consortium (NESG)
Deposit date:2022-02-15
Release date:2022-08-10
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:AlphaFold Models of Small Proteins Rival the Accuracy of Solution NMR Structures.
Front Mol Biosci, 9, 2022

225399

數據於2024-09-25公開中

PDB statisticsPDBj update infoContact PDBjnumon