Loading
PDBj
MenuPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDBDonate
RCSB PDBPDBeBMRBAdv. SearchSearch help

1CH3
DownloadVisualize
BU of 1ch3 by Molmil
RECOMBINANT SPERM WHALE MYOGLOBIN L89W MUTANT (MET)
Descriptor: PROTEIN (MYOGLOBIN), PROTOPORPHYRIN IX CONTAINING FE, SULFATE ION
Authors:Liong, E.C, Phillips Jr, G.N.
Deposit date:1999-03-31
Release date:1999-04-09
Last modified:2023-08-09
Method:X-RAY DIFFRACTION (2 Å)
Cite:Waterproofing the heme pocket. Role of proximal amino acid side chains in preventing hemin loss from myoglobin.
J.Biol.Chem., 276, 2001
8RQN
DownloadVisualize
BU of 8rqn by Molmil
Human thyroid hormone receptor beta ligand binding domain in complex with beta-selective agonist ALG-055009
Descriptor: 6-azanyl-2-[3,5-bis(chloranyl)-4-[(6-oxidanylidene-5-propan-2-yl-1~{H}-pyridazin-3-yl)oxy]phenyl]-1,2,4-triazine-3,5-dione, Thyroid hormone receptor beta
Authors:Lammens, A, Maskos, K, Stoycheva, A.D, McGowan, D.C.
Deposit date:2024-01-18
Release date:2024-09-11
Last modified:2024-11-20
Method:X-RAY DIFFRACTION (2.88 Å)
Cite:Discovery and Preclinical Profile of ALG-055009, a Potent and Selective Thyroid Hormone Receptor Beta (THR-beta ) Agonist for the Treatment of MASH.
J.Med.Chem., 67, 2024
6LT0
DownloadVisualize
BU of 6lt0 by Molmil
cryo-EM structure of C9ORF72-SMCR8-WDR41
Descriptor: Guanine nucleotide exchange C9orf72, Guanine nucleotide exchange protein SMCR8, WD repeat-containing protein 41
Authors:Tang, D, Sheng, J, Xu, L, Zhan, X, Yan, C, Qi, S.
Deposit date:2020-01-21
Release date:2020-04-15
Last modified:2024-03-27
Method:ELECTRON MICROSCOPY (3.2 Å)
Cite:Cryo-EM structure of C9ORF72-SMCR8-WDR41 reveals the role as a GAP for Rab8a and Rab11a.
Proc.Natl.Acad.Sci.USA, 117, 2020
8CPK
DownloadVisualize
BU of 8cpk by Molmil
Crystal structure of EtpA secretion domain from Enterotoxigenic Escherichia coli
Descriptor: EtpA
Authors:Ntui, C.M, Schubert, W.D, Fleckenstein, J.M.
Deposit date:2023-03-02
Release date:2024-01-10
Last modified:2024-07-24
Method:X-RAY DIFFRACTION (1.76 Å)
Cite:Structural and biophysical characterization of the secreted, beta-helical adhesin EtpA of Enterotoxigenic Escherichia coli.
Plos One, 18, 2023
4HMP
DownloadVisualize
BU of 4hmp by Molmil
Crystal structure of iron uptake ABC transporter substrate-binding protein PiaA from Streptococcus pneumoniae TIGR4
Descriptor: 1,2-ETHANEDIOL, CADMIUM ION, GLYCEROL, ...
Authors:Cheng, W, Li, Q, Jiang, Y.-L, Chen, Y, Zhou, C.-Z.
Deposit date:2012-10-18
Release date:2013-09-04
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Structures of Streptococcus pneumoniae PiaA and Its Complex with Ferrichrome Reveal Insights into the Substrate Binding and Release of High Affinity Iron Transporters
Plos One, 8, 2013
7PGL
DownloadVisualize
BU of 7pgl by Molmil
HHIP-N, the N-terminal domain of the Hedgehog-Interacting Protein (HHIP), apo-form
Descriptor: Hedgehog-interacting protein
Authors:Griffiths, S.C, Schwab, R.A, El Omari, K, Bishop, B, Iverson, E.J, Malinuskas, T, Dubey, R, Qian, M, Covey, D.F, Gilbert, R.J.C, Rohatgi, R, Siebold, C.
Deposit date:2021-08-14
Release date:2021-12-15
Last modified:2024-11-13
Method:X-RAY DIFFRACTION (2.63 Å)
Cite:Hedgehog-Interacting Protein is a multimodal antagonist of Hedgehog signalling.
Nat Commun, 12, 2021
7BBL
DownloadVisualize
BU of 7bbl by Molmil
Structure of human Gemin6/Gemin7/Gemin8 trimeric complex
Descriptor: Gem-associated protein 6, Gem-associated protein 7, Gem-associated protein 8
Authors:Viswanathan, A, Grimm, C, Fischer, U.
Deposit date:2020-12-17
Release date:2021-01-20
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.521 Å)
Cite:Identification and structural analysis of the Schizosaccharomyces pombe SMN complex.
Nucleic Acids Res., 49, 2021
1CH2
DownloadVisualize
BU of 1ch2 by Molmil
RECOMBINANT SPERM WHALE MYOGLOBIN L89F MUTANT (MET)
Descriptor: PROTEIN (MYOGLOBIN), PROTOPORPHYRIN IX CONTAINING FE, SULFATE ION
Authors:Liong, E.C, Phillips Jr, G.N.
Deposit date:1999-03-31
Release date:1999-04-09
Last modified:2023-08-09
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Waterproofing the heme pocket. Role of proximal amino acid side chains in preventing hemin loss from myoglobin.
J.Biol.Chem., 276, 2001
6X19
DownloadVisualize
BU of 6x19 by Molmil
Non peptide agonist CHU-128, bound to Glucagon-Like peptide-1 (GLP-1) Receptor
Descriptor: 3-{(1S)-1-[5-(2,2-dimethylmorpholin-4-yl)-2-{(4S)-2-(4-fluoro-3,5-dimethylphenyl)-3-[3-(4-fluoro-1-methyl-1H-indazol-5-yl)-2-oxo-2,3-dihydro-1H-imidazol-1-yl]-4-methyl-2,4,6,7-tetrahydro-5H-pyrazolo[4,3-c]pyridine-5-carbonyl}-1H-indol-1-yl]butyl}-1,2,4-oxadiazol-5(4H)-one, Glucagon-like peptide 1 receptor, Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2, ...
Authors:Belousoff, M.J, Zhang, X, Danev, R.
Deposit date:2020-05-18
Release date:2020-09-09
Last modified:2025-06-04
Method:ELECTRON MICROSCOPY (2.1 Å)
Cite:Differential GLP-1R Binding and Activation by Peptide and Non-peptide Agonists.
Mol.Cell, 80, 2020
5MV8
DownloadVisualize
BU of 5mv8 by Molmil
Structure of human Myosin 7b C-terminal MyTH4-FERM domain in complex with harmonin-a PDZ3 domain
Descriptor: GLYCEROL, MAGNESIUM ION, Unconventional myosin-VIIb, ...
Authors:Yu, I, Sourigues, Y, Titus, M.A, Houdusse, A.
Deposit date:2017-01-16
Release date:2017-07-05
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (1.88 Å)
Cite:Myosin 7 and its adaptors link cadherins to actin.
Nat Commun, 8, 2017
3DC5
DownloadVisualize
BU of 3dc5 by Molmil
Crystal Structure of a manganese superoxide dismutases from Caenorhabditis elegans
Descriptor: MALONATE ION, MANGANESE (II) ION, Superoxide dismutase [Mn] 2
Authors:Trinh, C.H, Hunter, T, Stewart, E.E, Phillips, S.E.V, Hunter, G.J.
Deposit date:2008-06-03
Release date:2009-06-09
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Purification, crystallization and X-ray structures of the two manganese superoxide dismutases from Caenorhabditis elegans
Acta Crystallogr.,Sect.F, 64, 2008
4HMO
DownloadVisualize
BU of 4hmo by Molmil
Crystal structure of streptococcus pneumoniae TIGR4 PiaA in complex with Bis-tris propane
Descriptor: 2-[3-(2-HYDROXY-1,1-DIHYDROXYMETHYL-ETHYLAMINO)-PROPYLAMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, GLYCEROL, Iron-compound ABC transporter, ...
Authors:Cheng, W, Li, Q, Jiang, Y.-L, Chen, Y, Zhou, C.-Z.
Deposit date:2012-10-18
Release date:2013-09-04
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structures of Streptococcus pneumoniae PiaA and Its Complex with Ferrichrome Reveal Insights into the Substrate Binding and Release of High Affinity Iron Transporters
Plos One, 8, 2013
6F27
DownloadVisualize
BU of 6f27 by Molmil
NMR solution structure of non-bound [des-Arg10]-kallidin (DAKD)
Descriptor: DAKD
Authors:Richter, C, Jonker, H.R.A, Schwalbe, H, Joedicke, L, Mao, J, Kuenze, G, Reinhart, C, Kalavacherla, T, Meiler, J, Preu, J, Michel, H, Glaubitz, C.
Deposit date:2017-11-23
Release date:2018-01-10
Last modified:2024-06-19
Method:SOLUTION NMR
Cite:The molecular basis of subtype selectivity of human kinin G-protein-coupled receptors.
Nat. Chem. Biol., 14, 2018
1CF2
DownloadVisualize
BU of 1cf2 by Molmil
THREE-DIMENSIONAL STRUCTURE OF D-GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE FROM THE HYPERTHERMOPHILIC ARCHAEON METHANOTHERMUS FERVIDUS
Descriptor: NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE, PROTEIN (GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE), SULFATE ION
Authors:Charron, C, Talfournier, F, Isuppov, M.N, Branlant, G, Littlechild, J.A, Vitoux, B, Aubry, A.
Deposit date:1999-03-24
Release date:2000-03-29
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Crystallization and preliminary X-ray diffraction studies of D-glyceraldehyde-3-phosphate dehydrogenase from the hyperthermophilic archaeon Methanothermus fervidus.
Acta Crystallogr.,Sect.D, 55, 1999
7VF4
DownloadVisualize
BU of 7vf4 by Molmil
Crystal structure of Vps75 from Candida albicans
Descriptor: CHLORIDE ION, SODIUM ION, Vps75
Authors:Wang, W, Chen, X, Yang, Z, Chen, X, Li, C, Wang, M.
Deposit date:2021-09-10
Release date:2021-10-06
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (3.1 Å)
Cite:Crystal structure of histone chaperone Vps75 from Candida albicans.
Biochem.Biophys.Res.Commun., 578, 2021
7KD4
DownloadVisualize
BU of 7kd4 by Molmil
Structure of the C-terminal domain of the Menangle virus phosphoprotein (residues 329 -388), fused to MBP. Space group P21.
Descriptor: Maltodextrin-binding protein and Phosphoprotein fusion protein, SULFATE ION, alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose
Authors:Webby, M.N, Kingston, R.L.
Deposit date:2020-10-08
Release date:2021-09-15
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.312 Å)
Cite:Structural Analysis of the Menangle Virus P Protein Reveals a Soft Boundary between Ordered and Disordered Regions.
Viruses, 13, 2021
1CIO
DownloadVisualize
BU of 1cio by Molmil
RECOMBINANT SPERM WHALE MYOGLOBIN I99V MUTANT (MET)
Descriptor: PROTEIN (MYOGLOBIN), PROTOPORPHYRIN IX CONTAINING FE, SULFATE ION
Authors:Liong, E.C, Phillips Jr, G.N.
Deposit date:1999-04-01
Release date:1999-04-09
Last modified:2023-08-09
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Waterproofing the heme pocket. Role of proximal amino acid side chains in preventing hemin loss from myoglobin.
J.Biol.Chem., 276, 2001
1D0Z
DownloadVisualize
BU of 1d0z by Molmil
DICTYOSTELIUM MYOSIN S1DC (MOTOR DOMAIN FRAGMENT) COMPLEXED WITH P-NITROPHENYL AMINOETHYLDIPHOSPHATE BERYLLIUM TRIFLUORIDE.
Descriptor: MAGNESIUM ION, MYOSIN, P-NITROPHENYL AMINOETHYLDIPHOSPHATE BERYLLIUM TRIFLUORIDE
Authors:Gulick, A.M, Bauer, C.B, Thoden, J.B, Pate, E, Yount, R.G, Rayment, I.
Deposit date:1999-09-15
Release date:2000-01-12
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2 Å)
Cite:X-ray structures of the Dictyostelium discoideum myosin motor domain with six non-nucleotide analogs.
J.Biol.Chem., 275, 2000
6EY7
DownloadVisualize
BU of 6ey7 by Molmil
Human cytomegalovirus terminase nuclease domain, Mn soaked, inhibitor bound
Descriptor: 4-[(4-fluorophenyl)methyl-methyl-amino]-2,4-bis(oxidanylidene)butanoic acid, CHLORIDE ION, MANGANESE (II) ION, ...
Authors:Bongarzone, S, Nadal, M, Kaczmarska, Z, Machon, C, Alvarez, M, Albericio, F, Coll, M.
Deposit date:2017-11-10
Release date:2018-10-03
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Structure-Driven Discovery of alpha , gamma-Diketoacid Inhibitors Against UL89 Herpesvirus Terminase.
Acs Omega, 3, 2018
2W75
DownloadVisualize
BU of 2w75 by Molmil
Structures of P. aeruginosa FpvA bound to heterologous pyoverdines: Apo-FpvA
Descriptor: 3,6,9,12,15-PENTAOXATRICOSAN-1-OL, FERRIPYOVERDINE RECEPTOR, PHOSPHATE ION
Authors:Greenwald, J, Nader, M, Celia, H, Gruffaz, C, Meyer, J.-M, Schalk, I.J, Pattus, F.
Deposit date:2008-12-20
Release date:2009-05-12
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Fpva Bound to Non-Cognate Pyoverdines: Molecular Basis of Siderophore Recognition by an Iron Transporter.
Mol.Microbiol., 72, 2009
4HS1
DownloadVisualize
BU of 4hs1 by Molmil
High-resolution crystal structure of Glutaredoxin like protein NrdH from Mycobacterium tuberculosis.
Descriptor: CHLORIDE ION, DI(HYDROXYETHYL)ETHER, GLYCEROL, ...
Authors:Phulera, S, Mande, S.C.
Deposit date:2012-10-29
Release date:2013-06-26
Last modified:2024-11-20
Method:X-RAY DIFFRACTION (0.87 Å)
Cite:The Crystal Structure of Mycobacterium tuberculosis NrdH at 0.87 A Suggests a Possible Mode of Its Activity.
Biochemistry, 52, 2013
2VRK
DownloadVisualize
BU of 2vrk by Molmil
Structure of a seleno-methionyl derivative of wild type arabinofuranosidase from Thermobacillus xylanilyticus
Descriptor: ALPHA-L-ARABINOFURANOSIDASE, PHOSPHATE ION
Authors:Paes, G, Skov, L.K, ODonohue, M.J, Remond, C, Kastrup, J.S, Gajhede, M, Mirza, O.
Deposit date:2008-04-09
Release date:2008-07-01
Last modified:2024-11-06
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:The Structure of the Complex between a Branched Pentasaccharide and Thermobacillus Xylanilyticus Gh-51 Arabinofuranosidase Reveals Xylan-Binding Determinants and Induced Fit.
Biochemistry, 47, 2008
8DRX
DownloadVisualize
BU of 8drx by Molmil
Product structure of SARS-CoV-2 Mpro C145A mutant in complex with nsp10-nsp11 (C10) cut site sequence (form 2)
Descriptor: Fusion protein of 3C-like proteinase nsp5 and nsp10-nsp11 (C10) cut site, SODIUM ION
Authors:Lee, J, Kenward, C, Worrall, L.J, Vuckovic, M, Paetzel, M, Strynadka, N.C.J.
Deposit date:2022-07-21
Release date:2022-09-21
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:X-ray crystallographic characterization of the SARS-CoV-2 main protease polyprotein cleavage sites essential for viral processing and maturation.
Nat Commun, 13, 2022
3L3P
DownloadVisualize
BU of 3l3p by Molmil
Crystal structure of the C-terminal domain of Shigella type III effector IpaH9.8, with a novel domain swap
Descriptor: IpaH9.8
Authors:Seyedarabi, A, Sullivan, J.A, Sasakawa, C, Pickersgill, R.W.
Deposit date:2009-12-17
Release date:2010-09-08
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (3.2 Å)
Cite:A disulfide driven domain swap switches off the activity of Shigella IpaH9.8 E3 ligase
Febs Lett., 584, 2010
8DRT
DownloadVisualize
BU of 8drt by Molmil
Product structure of SARS-CoV-2 Mpro C145A mutant in complex with nsp6-nsp7 (C6) cut site sequence (form 2)
Descriptor: 3C-like proteinase nsp5
Authors:Lee, J, Kenward, C, Worrall, L.J, Vuckovic, M, Paetzel, M, Strynadka, N.C.J.
Deposit date:2022-07-21
Release date:2022-09-21
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:X-ray crystallographic characterization of the SARS-CoV-2 main protease polyprotein cleavage sites essential for viral processing and maturation.
Nat Commun, 13, 2022

238582

數據於2025-07-09公開中

PDB statisticsPDBj update infoContact PDBjnumon