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2RRQ	DNA oligomer containing propylene cross-linked cyclic 2'-deoxyuridylate dimer Descriptor: DNA (5'-D(*CP*CP*TP*TP*CP*AP*(JDT)P*TP*AP*CP*AP*TP*CP*C)-3'), DNA (5'-D(*GP*GP*AP*TP*GP*TP*AP*AP*TP*GP*AP*AP*GP*G)-3') Authors: Furuita, K, Murata, S, Jee, J.G, Ichikawa, S, Matsuda, A, Kojima, C. Deposit date: 2011-03-24 Release date: 2011-06-08 Last modified: 2024-05-15 Method: SOLUTION NMR Cite: Structural Feature of Bent DNA Recognized by HMGB1 J.Am.Chem.Soc., 133, 2011
7XKM	Crystal structure of DNA-Ag(I) rod comprising a one-dimensional array of 11 silver ions Descriptor: DNA (5'-D(*CP*GP*CP*GP*CP*(BRU)P*CP*(BRU)P*CP*GP*CP*G)-3'), SILVER ION Authors: Kondo, J, Ono, A, Atsugi, T. Deposit date: 2022-04-20 Release date: 2022-07-06 Last modified: 2024-05-29 Method: X-RAY DIFFRACTION (2.79 Å) Cite: A Novel Ag I -DNA Rod Comprising a One-Dimensional Array of 11 Silver Ions within a Double Helical Structure. Angew.Chem.Int.Ed.Engl., 61, 2022
4GRE	DNA holliday junction stabilized by iodine halogen bond. I2J Construct of related reference Descriptor: DNA (5'-D(*CP*CP*GP*AP*TP*AP*CP*CP*GP*G)-3'), DNA (5'-D(*CP*CP*GP*GP*TP*AP*(IOU)P*CP*GP*G)-3') Authors: Ho, P.S, Carter, M. Deposit date: 2012-08-24 Release date: 2013-07-31 Last modified: 2024-02-28 Method: X-RAY DIFFRACTION (1.7 Å) Cite: Enthalpy-entropy compensation in biomolecular halogen bonds measured in DNA junctions. Biochemistry, 52, 2013
4GS2	DNA Holliday junction stabilized by iodine halogen bond. I1J construct in related reference. Descriptor: DNA (5'-D(*CP*CP*GP*AP*TP*AP*CP*CP*GP*G)-3'), DNA (5'-D(*CP*CP*GP*GP*TP*AP*(5IU)P*CP*GP*G)-3') Authors: Ho, P.S, Carter, M. Deposit date: 2012-08-27 Release date: 2013-07-31 Last modified: 2023-09-13 Method: X-RAY DIFFRACTION (1.9 Å) Cite: Enthalpy-entropy compensation in biomolecular halogen bonds measured in DNA junctions. Biochemistry, 52, 2013
4E2I	The Complex Structure of the SV40 Helicase Large T Antigen and p68 Subunit of DNA Polymerase Alpha-Primase Descriptor: DNA polymerase alpha subunit B, Large T antigen, ZINC ION Authors: Zhou, B, Arnett, D.R, Yu, X, Brewster, A, Sowd, G.A, Xie, C.L, Vila, S, Gai, D, Fanning, E, Chen, X.S. Deposit date: 2012-03-08 Release date: 2012-06-13 Last modified: 2024-02-28 Method: X-RAY DIFFRACTION (5 Å) Cite: Structural basis for the interaction of a hexameric replicative helicase with the regulatory subunit of human DNA polymerase alpha-primase. J.Biol.Chem., 287, 2012
6DBL	Cryo-EM structure of RAG in complex with 12-RSS and 23-RSS substrate DNAs Descriptor: CALCIUM ION, Molecule name: Forward strand of 12-RSS substrate DNA, Molecule name: Forward strand of 23-RSS substrate DNA, ... Authors: Wu, H, Liao, M, Ru, H, Mi, W. Deposit date: 2018-05-03 Release date: 2018-08-01 Last modified: 2024-11-06 Method: ELECTRON MICROSCOPY (5 Å) Cite: DNA melting initiates the RAG catalytic pathway. Nat. Struct. Mol. Biol., 25, 2018
6DBQ	Cryo-EM structure of RAG in complex with 12-RSS and 23-RSS substrate DNAs Descriptor: CALCIUM ION, Molecule name: Forward strand of 12-RSS substrate DNA, Molecule name: Forward strand of 23-RSS substrate DNA, ... Authors: Wu, H, Liao, M, Ru, H, Mi, W. Deposit date: 2018-05-03 Release date: 2018-08-01 Last modified: 2024-03-13 Method: ELECTRON MICROSCOPY (4.22 Å) Cite: DNA melting initiates the RAG catalytic pathway. Nat. Struct. Mol. Biol., 25, 2018
6DBV	Cryo-EM structure of RAG in complex with 12-RSS and 23-RSS substrate DNAs Descriptor: CALCIUM ION, Forward strand of 12-RSS substrate DNA, Forward strand of 23-RSS substrate DNA, ... Authors: Wu, H, Liao, M, Ru, H, Mi, W. Deposit date: 2018-05-03 Release date: 2018-08-01 Last modified: 2024-11-06 Method: ELECTRON MICROSCOPY (4.29 Å) Cite: DNA melting initiates the RAG catalytic pathway. Nat. Struct. Mol. Biol., 25, 2018
7WAZ	PlmCasX-sgRNAv1-dsDNA ternary complex at ts loading state Descriptor: NTS-DNA, RNA (115-MER), TS-DNA, ... Authors: Zhang, S, Liu, J.J.G. Deposit date: 2021-12-15 Release date: 2022-03-16 Last modified: 2025-07-02 Method: ELECTRON MICROSCOPY (3.4 Å) Cite: Chimeric CRISPR-CasX enzymes and guide RNAs for improved genome editing activity. Mol.Cell, 82, 2022
6AQX	Crystal Structure of Z-DNA with 6-fold Twinning_Z4B Descriptor: DNA (5'-D(*CP*GP*CP*GP*CP*G)-3') Authors: Luo, Z, Dauter, Z, Gilski, M. Deposit date: 2017-08-21 Release date: 2017-08-30 Last modified: 2023-10-04 Method: X-RAY DIFFRACTION (1.55 Å) Cite: Four highly pseudosymmetric and/or twinned structures of d(CGCGCG)2 extend the repertoire of crystal structures of Z-DNA. Acta Crystallogr D Struct Biol, 73, 2017
6AQV	Crystal Structure of Z-DNA with 6-fold Twinning_Z3B Descriptor: DNA (5'-D(*CP*GP*CP*GP*CP*G)-3') Authors: Luo, Z, Dauter, Z, Gilski, M. Deposit date: 2017-08-21 Release date: 2017-08-30 Last modified: 2023-10-04 Method: X-RAY DIFFRACTION (1.3 Å) Cite: Four highly pseudosymmetric and/or twinned structures of d(CGCGCG)2 extend the repertoire of crystal structures of Z-DNA. Acta Crystallogr D Struct Biol, 73, 2017
441D	HIGH RESOLUTION A-DNA CRYSTAL STRYCTURES OF D(AGGGGCCCCT): AN A-DNA MODEL OF POLY(DG).POLY(DC) Descriptor: DNA (5'-D(*AP*GP*GP*GP*GP*CP*CP*CP*CP*T)-3') Authors: Gao, Y.G, Robinson, H.H, Wang, A.H. Deposit date: 1999-01-13 Release date: 1999-01-15 Last modified: 2024-02-28 Method: X-RAY DIFFRACTION (1.5 Å) Cite: High-resolution A-DNA crystal structures of d(AGGGGCCCCT). An A-DNA model of poly(dG) x poly(dC). Eur.J.Biochem., 261, 1999
6DBT	Cryo-EM structure of RAG in complex with 12-RSS and 23-RSS substrate DNAs Descriptor: CALCIUM ION, Forward strand of 12-RSS substrate DNA, Forward strand of 23-RSS substrate DNA, ... Authors: Wu, H, Liao, M, Ru, H, Mi, W. Deposit date: 2018-05-03 Release date: 2018-08-01 Last modified: 2024-03-13 Method: ELECTRON MICROSCOPY (4.3 Å) Cite: DNA melting initiates the RAG catalytic pathway. Nat. Struct. Mol. Biol., 25, 2018
6EN1	Structure of the Tn1549 transposon Integrase (aa 82-397, R225K) in complex with a circular intermediate DNA (CI6a-DNA) Descriptor: DI(HYDROXYETHYL)ETHER, DNA (45-MER), Int protein Authors: Rubio-Cosials, A, Barabas, O. Deposit date: 2017-10-04 Release date: 2018-04-04 Last modified: 2024-01-17 Method: X-RAY DIFFRACTION (2.67 Å) Cite: Transposase-DNA Complex Structures Reveal Mechanisms for Conjugative Transposition of Antibiotic Resistance. Cell, 173, 2018
440D	HIGH RESOLUTION A-DNA CRYSTAL STRYCTURES OF D(AGGGGCCCCT): AN A-DNA MODEL OF POLY(DG).POLY(DC) Descriptor: DNA (5'-D(*AP*GP*GP*GP*GP*CP*CP*CP*CP*T)-3') Authors: Gao, Y.-G, Robinson, H.H, Wang, A.H.-J. Deposit date: 1999-01-13 Release date: 1999-01-15 Last modified: 2024-02-28 Method: X-RAY DIFFRACTION (1.1 Å) Cite: High-resolution A-DNA crystal structures of d(AGGGGCCCCT). An A-DNA model of poly(dG) x poly(dC). Eur.J.Biochem., 261, 1999
6AQT	Crystal Structure of Z-DNA with 6-fold Twinning_Z3A Descriptor: DNA (5'-D(*CP*GP*CP*GP*CP*G)-3') Authors: Luo, Z, Dauter, Z, Gilski, M. Deposit date: 2017-08-21 Release date: 2017-08-30 Last modified: 2023-10-04 Method: X-RAY DIFFRACTION (1.05 Å) Cite: Four highly pseudosymmetric and/or twinned structures of d(CGCGCG)2 extend the repertoire of crystal structures of Z-DNA. Acta Crystallogr D Struct Biol, 73, 2017
6AQW	Crystal Structure of Z-DNA with 6-fold Twinning_Z4A Descriptor: DNA (5'-D(*CP*GP*CP*GP*CP*G)-3') Authors: Luo, Z, Dauter, Z, Gilski, M. Deposit date: 2017-08-21 Release date: 2017-08-30 Last modified: 2023-10-04 Method: X-RAY DIFFRACTION (1.3 Å) Cite: Four highly pseudosymmetric and/or twinned structures of d(CGCGCG)2 extend the repertoire of crystal structures of Z-DNA. Acta Crystallogr D Struct Biol, 73, 2017
6EN2	Structure of the Tn1549 transposon Integrase (aa 82-397, R225K) in complex with a circular intermediate DNA (CI6b-DNA) Descriptor: DI(HYDROXYETHYL)ETHER, DNA (45-MER), Int protein Authors: Rubio-Cosials, A, Barabas, O. Deposit date: 2017-10-04 Release date: 2018-04-04 Last modified: 2024-01-17 Method: X-RAY DIFFRACTION (2.67 Å) Cite: Transposase-DNA Complex Structures Reveal Mechanisms for Conjugative Transposition of Antibiotic Resistance. Cell, 173, 2018
6BWY	DNA substrate selection by APOBEC3G Descriptor: DNA (30-MER), PHOSPHATE ION, Protection of telomeres protein 1, ... Authors: Ziegler, S.J, Buzovetsky, O. Deposit date: 2017-12-15 Release date: 2018-04-18 Last modified: 2023-10-04 Method: X-RAY DIFFRACTION (2.9 Å) Cite: Insights into DNA substrate selection by APOBEC3G from structural, biochemical, and functional studies. PLoS ONE, 13, 2018
6DBU	Cryo-EM structure of RAG in complex with 12-RSS and 23-RSS substrate DNAs Descriptor: CALCIUM ION, Forward strand RSS substrate DNA, Recombination activating gene 1 - MBP chimera, ... Authors: Wu, H, Liao, M, Ru, H, Mi, W. Deposit date: 2018-05-03 Release date: 2018-08-01 Last modified: 2024-03-13 Method: ELECTRON MICROSCOPY (3.9 Å) Cite: DNA melting initiates the RAG catalytic pathway. Nat. Struct. Mol. Biol., 25, 2018
6DGD	PriA helicase bound to dsDNA of a DNA replication fork Descriptor: DNA (5'-D(P*AP*GP*CP*AP*CP*GP*CP*CP*GP*AP*CP*T)-3'), DNA (5'-D(P*GP*AP*GP*CP*AP*CP*GP*CP*CP*GP*AP*CP*T)-3'), DNA (5'-D(P*GP*TP*CP*GP*GP*CP*GP*TP*GP*CP*TP*C)-3'), ... Authors: Satyshur, K.A, Windgassen, T.A, Keck, J.L. Deposit date: 2018-05-17 Release date: 2018-09-05 Last modified: 2023-10-11 Method: X-RAY DIFFRACTION (2.823 Å) Cite: Structure-specific DNA replication-fork recognition directs helicase and replication restart activities of the PriA helicase. Proc. Natl. Acad. Sci. U.S.A., 115, 2018
7WB0	PlmCasX-sgRNAv1-dsDNA ternary complex at nts loading state with flexible H2 domain Descriptor: NTS-DNA, RNA (115-MER), TS-DNA, ... Authors: Zhang, S, Liu, J.J.G. Deposit date: 2021-12-15 Release date: 2022-03-16 Last modified: 2025-07-02 Method: ELECTRON MICROSCOPY (3.2 Å) Cite: Chimeric CRISPR-CasX enzymes and guide RNAs for improved genome editing activity. Mol.Cell, 82, 2022
6DBO	Cryo-EM structure of RAG in complex with 12-RSS and 23-RSS substrate DNAs Descriptor: CALCIUM ION, Forward strand of substrate RSS DNA, Recombination activating gene 1 - MBP chimera, ... Authors: Wu, H, Liao, M, Ru, H, Mi, W. Deposit date: 2018-05-03 Release date: 2018-08-01 Last modified: 2024-03-13 Method: ELECTRON MICROSCOPY (4.4 Å) Cite: DNA melting initiates the RAG catalytic pathway. Nat. Struct. Mol. Biol., 25, 2018
7YGO	DNA duplex containing 5OHU-Hg(II)-T base pairs Descriptor: DNA (5'-D(*GP*GP*AP*CP*CP*TP*(6HU)P*GP*GP*TP*CP*C)-3'), MERCURY (II) ION Authors: Kondo, J, Torigoe, H, Arakawa, F. Deposit date: 2022-07-12 Release date: 2023-05-24 Last modified: 2024-05-29 Method: X-RAY DIFFRACTION (2.403 Å) Cite: Specific binding of Hg 2+ to mismatched base pairs involving 5-hydroxyuracil in duplex DNA. J.Inorg.Biochem., 241, 2023
7WAY	PlmCasX-sgRNAv1-dsDNA ternary complex at nts loading state Descriptor: DNA (27-MER), DNA (33-MER), RNA, ... Authors: Zhang, S, Liu, J.J.G. Deposit date: 2021-12-15 Release date: 2022-03-16 Last modified: 2025-07-02 Method: ELECTRON MICROSCOPY (2.9 Å) Cite: Chimeric CRISPR-CasX enzymes and guide RNAs for improved genome editing activity. Mol.Cell, 82, 2022

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