1RRD
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![BU of 1rrd by Molmil](/molmil-images/mine/1rrd) | DNA/RNA HYBRID DUPLEX CONTAINING A PURINE-RICH RNA STRAND, NMR, 10 STRUCTURES | Descriptor: | DNA (5'-D(*GP*CP*TP*TP*CP*TP*CP*TP*TP*C)-3'), RNA (5'-R(*GP*AP*AP*GP*AP*GP*AP*AP*GP*C)-3') | Authors: | Gyi, J.I, Lane, A.N, Conn, G.L, Brown, T. | Deposit date: | 1997-10-21 | Release date: | 1998-04-22 | Last modified: | 2024-05-22 | Method: | SOLUTION NMR | Cite: | Solution structures of DNA.RNA hybrids with purine-rich and pyrimidine-rich strands: comparison with the homologous DNA and RNA duplexes. Biochemistry, 37, 1998
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3JXY
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![BU of 3jxy by Molmil](/molmil-images/mine/3jxy) | |
5VZL
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![BU of 5vzl by Molmil](/molmil-images/mine/5vzl) | cryo-EM structure of the Cas9-sgRNA-AcrIIA4 anti-CRISPR complex | Descriptor: | CRISPR-associated endonuclease Cas9, phage anti-CRISPR AcrIIA4, single guide RNA (116-MER) | Authors: | Jiang, F, Liu, J.J, Nogales, E, Doudna, J.A. | Deposit date: | 2017-05-29 | Release date: | 2017-07-26 | Last modified: | 2024-03-13 | Method: | ELECTRON MICROSCOPY (3.9 Å) | Cite: | Disabling Cas9 by an anti-CRISPR DNA mimic. Sci Adv, 3, 2017
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5L2G
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![BU of 5l2g by Molmil](/molmil-images/mine/5l2g) | Solution Structure of a DNA Dodecamer with 5-methylcytosine at the 9th Position | Descriptor: | DNA (5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*(5CM)P*GP*CP*G)-3') | Authors: | Miears, H.L, Hoppins, J.J, Gruber, D.R, Kasymov, R.D, Johnson, E.C, Zharkov, D.O, Smirnov, S.L. | Deposit date: | 2016-08-01 | Release date: | 2016-12-21 | Last modified: | 2024-05-01 | Method: | SOLUTION NMR | Cite: | Oxidative damage to epigenetically methylated sites affects DNA stability, dynamics and enzymatic demethylation. Nucleic Acids Res., 46, 2018
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1SUU
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![BU of 1suu by Molmil](/molmil-images/mine/1suu) | |
1QZQ
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![BU of 1qzq by Molmil](/molmil-images/mine/1qzq) | human Tyrosyl DNA phosphodiesterase | Descriptor: | tyrosyl-DNA phosphodiesterase 1 | Authors: | Raymond, A.C, Rideout, M.C, Staker, B, Hjerrild, K, Burgin Jr, A.B. | Deposit date: | 2003-09-17 | Release date: | 2004-05-11 | Last modified: | 2024-02-14 | Method: | X-RAY DIFFRACTION (2.4 Å) | Cite: | Analysis of Human Tyrosyl-DNA Phosphodiesterase I Catalytic Residues. J.Mol.Biol., 338, 2004
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5L06
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![BU of 5l06 by Molmil](/molmil-images/mine/5l06) | Solution Structure of a DNA Dodecamer with 5-methylcytosine at the 3rd Position | Descriptor: | DNA (5'-D(*CP*GP*(5CM)P*GP*AP*AP*TP*TP*CP*GP*CP*G)-3') | Authors: | Miears, H.L, Hoppins, J.J, Gruber, D.R, Kasymov, R.D, Zharkov, D.O, Smirnov, S.L. | Deposit date: | 2016-07-26 | Release date: | 2016-12-21 | Last modified: | 2024-05-01 | Method: | SOLUTION NMR | Cite: | Oxidative damage to epigenetically methylated sites affects DNA stability, dynamics and enzymatic demethylation. Nucleic Acids Res., 46, 2018
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1NZP
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![BU of 1nzp by Molmil](/molmil-images/mine/1nzp) | Solution Structure of the Lyase Domain of Human DNA Polymerase Lambda | Descriptor: | DNA polymerase lambda | Authors: | DeRose, E.F, Kirby, T.W, Mueller, G.A, Bebenek, K, Garcia-Diaz, M, Blanco, L, Kunkel, T.A, London, R.E. | Deposit date: | 2003-02-19 | Release date: | 2003-08-05 | Last modified: | 2024-05-22 | Method: | SOLUTION NMR | Cite: | Solution Structure of the Lyase Domain of Human DNA Polymerase Lambda Biochemistry, 42, 2003
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219D
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![BU of 219d by Molmil](/molmil-images/mine/219d) | |
5TGX
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![BU of 5tgx by Molmil](/molmil-images/mine/5tgx) | |
4H5A
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![BU of 4h5a by Molmil](/molmil-images/mine/4h5a) | |
2LB4
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![BU of 2lb4 by Molmil](/molmil-images/mine/2lb4) | DNA / RNA Hybrid containing a central stereo specific Sp borano phosphate linkage | Descriptor: | DNA_(5'-D(*AP*TP*GP*GP*TP*BGR*CP*TP*C)-3')_, RNA_(5'-R(*GP*AP*GP*CP*AP*CP*CP*AP*U)-3')_ | Authors: | Johnson, C.N, Spring, A.M, Shaw, B.R, Germann, M.W. | Deposit date: | 2011-03-22 | Release date: | 2011-06-29 | Last modified: | 2024-05-01 | Method: | SOLUTION NMR | Cite: | Structural Basis of the RNase H1 Activity on Stereo Regular Borano Phosphonate DNA/RNA Hybrids. Biochemistry, 50, 2011
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2ADM
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![BU of 2adm by Molmil](/molmil-images/mine/2adm) | ADENINE-N6-DNA-METHYLTRANSFERASE TAQI | Descriptor: | ADENINE-N6-DNA-METHYLTRANSFERASE TAQI, S-ADENOSYLMETHIONINE | Authors: | Schluckebier, G, Saenger, W. | Deposit date: | 1996-07-15 | Release date: | 1997-01-27 | Last modified: | 2024-02-14 | Method: | X-RAY DIFFRACTION (2.6 Å) | Cite: | Differential binding of S-adenosylmethionine S-adenosylhomocysteine and Sinefungin to the adenine-specific DNA methyltransferase M.TaqI. J.Mol.Biol., 265, 1997
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2LAR
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![BU of 2lar by Molmil](/molmil-images/mine/2lar) | DNA / RNA Hybrid containing a central stereo specific Rp borano phosphate linkage | Descriptor: | DNA_(5'-D(*AP*TP*GP*GP*TP*BGR*CP*TP*C)-3')_, RNA_(5'-R(*GP*AP*GP*CP*AP*CP*CP*AP*U)-3')_ | Authors: | Johnson, C.N, Spring, A.M, Shaw, B.R, Germann, M.W. | Deposit date: | 2011-03-18 | Release date: | 2011-10-12 | Last modified: | 2024-05-01 | Method: | SOLUTION NMR | Cite: | Structural basis of the RNase H1 activity on stereo regular borano phosphonate DNA/RNA hybrids. Biochemistry, 50, 2011
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9EOQ
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![BU of 9eoq by Molmil](/molmil-images/mine/9eoq) | Cryo-EM Structure of a 1033 Scaffold Base DNA Origami Nanostructure V4 and TBA | Descriptor: | DNA (42-MER), DNA (5'-D(P*AP*TP*AP*TP*AP*GP*CP*GP*TP*GP*GP*AP*AP*GP*T)-3') | Authors: | Ali, K, Georg, K, Volodymyr, M, Johanna, G, Maximilian, N.H, Lukas, K, Simone, C, Hendrik, D. | Deposit date: | 2024-03-15 | Release date: | 2024-04-24 | Last modified: | 2024-05-08 | Method: | ELECTRON MICROSCOPY (7.5 Å) | Cite: | Designing Rigid DNA Origami Templates for Molecular Visualization Using Cryo-EM. Nano Lett., 24, 2024
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1B0S
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![BU of 1b0s by Molmil](/molmil-images/mine/1b0s) | BINDING OF AR-1-144, A TRI-IMIDAZOLE DNA MINOR GROOVE BINDER, TO CCGG SEQUENCE ANALYZED BY NMR SPECTROSCOPY | Descriptor: | (2-{[4-({4-[(4-FORMYLAMINO-1-METHYL-1H-IMIDAZOLE-2-CARBONYL)-AMINO]-1-METHYL-1H-IMIDAZOLE-2-CARBONYL}-AMINO)-1-METHYL-1 H-IMIDAZOLE-2-CARBONYL]-AMINO}-ETHYL)-DIMETHYL-AMMONIUM, DNA (5'-D(*GP*AP*AP*CP*CP*GP*GP*TP*TP*C)-3') | Authors: | Yang, X.-L, Kaenzig, C, Lee, M, Wang, A.H.-J. | Deposit date: | 1998-11-12 | Release date: | 1999-08-31 | Last modified: | 2023-12-27 | Method: | SOLUTION NMR | Cite: | Binding of AR-1-144, a tri-imidazole DNA minor groove binder, to CCGG sequence analyzed by NMR spectroscopy. Eur.J.Biochem., 263, 1999
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6WJK
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![BU of 6wjk by Molmil](/molmil-images/mine/6wjk) | Crystal Structure of a Self-Assembling DNA Crystal Scaffold with Rhombohedral Symmetry | Descriptor: | DNA (32-MER), DNA (5'-D(*TP*GP*GP*AP*AP*AP*CP*AP*GP*AP*CP*TP*GP*TP*CP*AP*GP*AP*TP*G)-3'), DNA (5'-D(P*AP*GP*CP*AP*TP*GP*A)-3'), ... | Authors: | Simmons, C.R, MacCulloch, T, Stephanopoulos, N, Yan, H. | Deposit date: | 2020-04-13 | Release date: | 2021-02-24 | Last modified: | 2023-10-18 | Method: | X-RAY DIFFRACTION (4.514 Å) | Cite: | A Self-Assembled Rhombohedral DNA Crystal Scaffold with Tunable Cavity Sizes and High-Resolution Structural Detail. Angew.Chem.Int.Ed.Engl., 59, 2020
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5VI0
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![BU of 5vi0 by Molmil](/molmil-images/mine/5vi0) | |
6ALU
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![BU of 6alu by Molmil](/molmil-images/mine/6alu) | Solution structure of a DNA dodecamer with 5-methylcytosine at the 3rd and 8-oxoguanine at the 4th position | Descriptor: | DNA (5'-D(*(DC5)P*GP*(DMC)P*(8OG)P*AP*AP*TP*TP*CP*GP*CP*(DG3))-3') | Authors: | Gruber, D.R, Shernyukov, A.V, Endutkin, A.V, Bagryanskaya, E.G, Zharkov, D.O, Smirnov, S.L. | Deposit date: | 2017-08-08 | Release date: | 2017-09-06 | Last modified: | 2024-05-01 | Method: | SOLUTION NMR | Cite: | Oxidative damage to epigenetically methylated sites affects DNA stability, dynamics and enzymatic demethylation. Nucleic Acids Res., 46, 2018
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6ALS
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![BU of 6als by Molmil](/molmil-images/mine/6als) | Solution structure of a DNA dodecamer with 5-methylcytosine at the 3rd and 9th position and 8-oxoguanine at the 4th position | Descriptor: | DNA (5'-D(*(DC5)P*GP*(DMC)P*(8OG)P*AP*AP*TP*TP*(DMC)P*GP*CP*(DG3))-3') | Authors: | Gruber, D.R, Shernyukov, A.V, Endutkin, A.V, Bagryanskaya, E.G, Zharkov, D.O, Smirnov, S.L. | Deposit date: | 2017-08-08 | Release date: | 2017-09-06 | Last modified: | 2024-05-01 | Method: | SOLUTION NMR | Cite: | Oxidative damage to epigenetically methylated sites affects DNA stability, dynamics and enzymatic demethylation. Nucleic Acids Res., 46, 2018
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4AN8
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![BU of 4an8 by Molmil](/molmil-images/mine/4an8) | |
229D
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![BU of 229d by Molmil](/molmil-images/mine/229d) | DNA ANALOG OF YEAST TRANSFER RNA PHE ANTICODON DOMAIN WITH MODIFIED BASES 5-METHYL CYTOSINE AND 1-METHYL GUANINE | Descriptor: | DNA (5'-D(*CP*CP*AP*GP*AP*CP*(UMP)P*GP*AP*AP*(MG1)P*AP*(UMP)P*(5CM)P*(UMP)P*GP*G)-3') | Authors: | Basti, M.M, Stuart, J.W, Lam, A.T, Guenther, R, Agris, P.F. | Deposit date: | 1995-08-16 | Release date: | 1995-12-07 | Last modified: | 2024-05-22 | Method: | SOLUTION NMR | Cite: | Design, biological activity and NMR-solution structure of a DNA analogue of yeast tRNA(Phe) anticodon domain. Nat.Struct.Biol., 3, 1996
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6UEF
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![BU of 6uef by Molmil](/molmil-images/mine/6uef) | Crystal Structure of a Self-Assembling DNA Scaffold Containing Sequence Modifications to Attempt to Disrupt Crystal Contacts in a Rhombohedral Lattice. | Descriptor: | DNA (5'-D(*CP*AP*AP*TP*GP*AP*CP*TP*CP*AP*TP*GP*CP*TP*CP*AP*TP*CP*GP*GP*A)-3'), DNA (5'-D(*TP*GP*TP*CP*CP*GP*AP*TP*G)-3'), DNA (5'-D(P*AP*GP*CP*AP*TP*GP*A)-3'), ... | Authors: | Simmons, C.R, MacCulloch, T, Stephanopoulos, N, Yan, H. | Deposit date: | 2019-09-20 | Release date: | 2020-09-23 | Last modified: | 2023-10-11 | Method: | X-RAY DIFFRACTION (2.95 Å) | Cite: | A Self-Assembled Rhombohedral DNA Crystal Scaffold with Tunable Cavity Sizes and High-Resolution Structural Detail. Angew.Chem.Int.Ed.Engl., 59, 2020
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6ALT
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![BU of 6alt by Molmil](/molmil-images/mine/6alt) | Solution structure of a DNA dodecamer with 5-methylcytosine at the 3rd and 9th position | Descriptor: | DNA (5'-D(*(DC5)P*GP*(DMC)P*GP*AP*AP*TP*TP*(DMC)P*GP*CP*(DG3))-3') | Authors: | Gruber, D.R, Hoppins, J.J, Miears, H.L, Zharkov, D.O, Smirnov, S.L. | Deposit date: | 2017-08-08 | Release date: | 2017-09-20 | Last modified: | 2024-05-01 | Method: | SOLUTION NMR | Cite: | Oxidative damage to epigenetically methylated sites affects DNA stability, dynamics and enzymatic demethylation. Nucleic Acids Res., 46, 2018
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3FL6
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![BU of 3fl6 by Molmil](/molmil-images/mine/3fl6) | |