PDB: 45953 resultsInfo pagesStatus searchChemie searchBIRD

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4C93	Crystal structure of the carboxy-terminal domain of yeast Ctf4 bound to Pol alpha. Descriptor: DNA POLYMERASE ALPHA CATALYTIC SUBUNIT A, DNA POLYMERASE ALPHA-BINDING PROTEIN Authors: Simon, A.C, Pellegrini, L. Deposit date: 2013-10-02 Release date: 2014-04-30 Last modified: 2024-05-08 Method: X-RAY DIFFRACTION (2.694 Å) Cite: A Ctf4 Trimer Couples the Cmg Helicase to DNA Polymerase a in the Eukaryotic Replisome Nature, 510, 2014
1RXZ	C-terminal region of A. fulgidus FEN-1 complexed with A. fulgidus PCNA Descriptor: DNA polymerase sliding clamp, Flap structure-specific endonuclease Authors: Chapados, B.R, Hosfield, D.J, Han, S, Qiu, J, Yelent, B, Shen, B, Tainer, J.A. Deposit date: 2003-12-18 Release date: 2004-01-27 Last modified: 2023-08-23 Method: X-RAY DIFFRACTION (2 Å) Cite: Structural Basis for FEN-1 Substrate Specificity and PCNA-Mediated Activation in DNA Replication and Repair Cell(Cambridge,Mass.), 116, 2004
8CRY	Crystal structure of alien DNA CTSZZPBSBSZPPBAG in an orthorhombic lattice Descriptor: DNA (5'-D(*CP*TP*(JSP)P*(1W5)P*(1W5)P*(1WA)P*(IGU)P*(JSP)P*(IGU)P*(JSP)P*(1W5)P*(1WA)P*(1WA)P*(IGU)P*AP*G)-3'), MAGNESIUM ION Authors: Georgiadis, M.M. Deposit date: 2022-05-12 Release date: 2023-05-17 Last modified: 2024-05-22 Method: X-RAY DIFFRACTION (1.2 Å) Cite: Alien DNA visualized at high resolution in A- and B-forms To Be Published
1ZNA	CONFORMATION AND DYNAMICS IN A Z-DNA TETRAMER Descriptor: DNA (5'-D(*CP*GP*CP*G)-3') Authors: Drew, H.R, Dickerson, R.E. Deposit date: 1981-01-26 Release date: 1981-03-18 Last modified: 2024-05-22 Method: X-RAY DIFFRACTION (1.5 Å) Cite: Conformation and dynamics in a Z-DNA tetramer. J.Mol.Biol., 152, 1981
202D	SOLUTION STRUCTURE OF THE MENOGARIL-DNA COMPLEX Descriptor: DNA (5'-D(*GP*AP*CP*AP*TP*GP*TP*C)-3'), MENOGARIL Authors: Chen, H, Patel, D.J. Deposit date: 1995-03-29 Release date: 1995-06-03 Last modified: 2024-03-13 Method: SOLUTION NMR Cite: Solution Structure of the Menogaril-DNA Complex J.Am.Chem.Soc., 117, 1995
4DWY	Interactions of Mn2+ with a non-self-complementary Z-type DNA duplex Descriptor: DNA (5'-D(*CP*AP*CP*GP*CP*G)-3'), DNA (5'-D(*CP*GP*CP*GP*TP*G)-3'), MANGANESE (II) ION Authors: Mandal, P.K, Venkadesh, S, Gautham, N. Deposit date: 2012-02-27 Release date: 2012-11-28 Last modified: 2024-03-20 Method: X-RAY DIFFRACTION (1.61 Å) Cite: Interactions of Mn(2+) with a non-self-complementary Z-type DNA duplex Acta Crystallogr.,Sect.F, 68, 2012
7XFV	Dimeric G-quadruplex DNA Formed in the Proximal Promoter of VEGFR-2 Descriptor: DNA (5'-D(*AP*TP*GP*AP*GP*GP*GP*GP*CP*GP*GP*GP*GP*T)-3') Authors: Zhang, Y, Lan, W, Wang, C, Cao, C. Deposit date: 2022-04-02 Release date: 2023-03-15 Last modified: 2024-05-15 Method: SOLUTION NMR Cite: Dimeric G-quadruplex DNA Structure in the Proximal Promoter of VEGFR-2 Reveals a New Drug Target to Inhibit Tumor Angiogenesis. Chin.J.Chem., 40, 2023
4DY8	Interactions of Mn2+ with a non-self-complementary Z-type DNA duplex Descriptor: DNA (5'-D(*CP*AP*CP*GP*CP*G)-3'), DNA (5'-D(*CP*GP*CP*GP*TP*G)-3'), DNA (5'-D(P*TP*G)-3'), ... Authors: Mandal, P.K, Venkadesh, S, Gautham, N. Deposit date: 2012-02-28 Release date: 2012-11-28 Last modified: 2024-03-20 Method: X-RAY DIFFRACTION (1.76 Å) Cite: Interactions of Mn(2+) with a non-self-complementary Z-type DNA duplex Acta Crystallogr.,Sect.F, 68, 2012
8ASH	Crystal structure of d(CCGGGGTACCCCGG) with XRB Descriptor: 4-[(~{E})-(3,6-dimethyl-1,3-benzothiazol-2-yl)iminomethyl]-~{N},~{N}-dimethyl-aniline, DNA (5'-D(*CP*CP*GP*GP*GP*GP*TP*AP*CP*CP*CP*CP*GP*G)-3') Authors: Sbirkova-Dimitrova, H.I, Shivachev, B.L, Rusev, R, Kuvandjiev, N, Heroux, A, Doukov, T. Deposit date: 2022-08-19 Release date: 2023-01-18 Last modified: 2024-01-31 Method: X-RAY DIFFRACTION (1.837 Å) Cite: Structural Characterization of Alzheimer DNA Promoter Sequences from the Amyloid Precursor Gene in the Presence of Thioflavin T and Analogs Crystals, 12, 2022
1RWZ	Crystal Structure of Proliferating Cell Nuclear Antigen (PCNA) from A. fulgidus Descriptor: DNA polymerase sliding clamp Authors: Chapados, B.R, Hosfield, D.J, Han, S, Qiu, J, Yelent, B, Shen, B, Tainer, J.A. Deposit date: 2003-12-17 Release date: 2004-01-27 Last modified: 2024-04-03 Method: X-RAY DIFFRACTION (1.8 Å) Cite: Structural Basis for FEN-1 Substrate Specificity and PCNA-Mediated Activation in DNA Replication and Repair Cell(Cambridge,Mass.), 116, 2004
1RXM	C-terminal region of FEN-1 bound to A. fulgidus PCNA Descriptor: DNA polymerase sliding clamp, consensus FEN-1 peptide Authors: Chapados, B.R, Hosfield, D.J, Han, S, Qiu, J, Yelent, B, Shen, B, Tainer, J.A. Deposit date: 2003-12-18 Release date: 2004-01-27 Last modified: 2023-08-23 Method: X-RAY DIFFRACTION (2.8 Å) Cite: Structural Basis for FEN-1 Substrate Specificity and PCNA-Mediated Activation in DNA Replication and Repair Cell(Cambridge,Mass.), 116, 2004
4C95	Crystal structure of the carboxy-terminal domain of yeast Ctf4 bound to Sld5 Descriptor: DNA POLYMERASE ALPHA-BINDING PROTEIN, DNA REPLICATION COMPLEX GINS PROTEIN SLD5 Authors: Simon, A.C, Pellegrini, L. Deposit date: 2013-10-02 Release date: 2014-04-30 Last modified: 2024-05-08 Method: X-RAY DIFFRACTION (2.694 Å) Cite: A Ctf4 Trimer Couples the Cmg Helicase to DNA Polymerase a in the Eukaryotic Replisome Nature, 510, 2014
3IKL	Crystal structure of Pol gB delta-I4. Descriptor: DNA polymerase subunit gamma-2, mitochondrial Authors: Lee, Y.S, Kennedy, W.D, Yin, Y.W. Deposit date: 2009-08-06 Release date: 2010-08-25 Last modified: 2024-02-21 Method: X-RAY DIFFRACTION (3.1 Å) Cite: Structural insight into processive human mitochondrial DNA synthesis and disease-related polymerase mutations. Cell(Cambridge,Mass.), 139, 2009
5CH0	Crystal structure of an A-form DNA duplex containing 5-hydroxylmethylcytidine Descriptor: DNA (5'-R(*G)-D(P*(UMS))-R(P*G)-D(P*T)-R(P*A)-D(P*(5HC))-R(P*AP*C)-3') Authors: Sheng, J. Deposit date: 2015-07-10 Release date: 2016-07-20 Last modified: 2023-09-27 Method: X-RAY DIFFRACTION (1.4 Å) Cite: Crystal structure of an A-form DNA duplex containing 5-hydroxylmethylcytidine To Be Published
5CJY	Crystal structure of a B-form DNA duplex containing 5-hydroxylmethylcytidine Descriptor: DNA (5'-D(*CP*GP*(5HC)P*GP*AP*AP*TP*TP*CP*GP*CP*G)-3'), MAGNESIUM ION Authors: Sheng, J. Deposit date: 2015-07-15 Release date: 2016-07-20 Last modified: 2023-09-27 Method: X-RAY DIFFRACTION (1.55 Å) Cite: Crystal structure of a B-form DNA duplex containing 5-hydroxylmethylcytidine To Be Published
4E1U	[Ru(bpy)2 dppz]2+ bound to DNA Descriptor: 5'-D(*CP*GP*GP*AP*AP*AP*TP*TP*AP*CP*CP*G)-3', BARIUM ION, Delta-[Ru(bpy)2dppz]2+ Authors: Song, H, Kaiser, J.T, Barton, J.K. Deposit date: 2012-03-07 Release date: 2012-06-20 Last modified: 2024-02-28 Method: X-RAY DIFFRACTION (0.92 Å) Cite: Crystal structure of delta-[Ru(bpy)2dppz]2+ bound to mismatched DNA reveals side-by-side metalloinsertion and intercalation. Nat Chem, 4, 2012
3HUE	Structure of the S. pombe Nbs1 FHA-BRCT1-BRCT2 domains Descriptor: DNA repair and telomere maintenance protein nbs1 Authors: Williams, R.S, Guenther, G, Tainer, J.A. Deposit date: 2009-06-13 Release date: 2009-10-13 Last modified: 2011-07-13 Method: X-RAY DIFFRACTION (2.8 Å) Cite: Nbs1 flexibly tethers Ctp1 and Mre11-Rad50 to coordinate DNA double-strand break processing and repair. Cell(Cambridge,Mass.), 139, 2009
5DEV	High resolution structure of CCG DNA repeats at 1.71 angstrom resolution Descriptor: DNA (5'-D(*TP*CP*CP*GP*CP*CP*GP*CP*CP*GP*A)-3') Authors: Hou, M.H, Jhan, C.R. Deposit date: 2015-08-26 Release date: 2016-09-07 Last modified: 2024-03-20 Method: X-RAY DIFFRACTION (1.71 Å) Cite: High resolution structure of CCG DNA repeats at 1.71 angstrom resolution To Be Published
2QLC	The crystal structure of DNA repair protein RadC from Chlorobium tepidum TLS Descriptor: DNA repair protein radC homolog Authors: Zhang, R, Duggan, E, Clancy, S, Joachimiak, A, Midwest Center for Structural Genomics (MCSG) Deposit date: 2007-07-12 Release date: 2007-09-04 Last modified: 2024-02-21 Method: X-RAY DIFFRACTION (2.3 Å) Cite: The crystal structure of DNA repair protein RadC from Chlorobium tepidum TLS. To be Published
3U2D	S. aureus GyrB ATPase domain in complex with small molecule inhibitor Descriptor: 4-bromo-5-methyl-N-[1-(3-nitropyridin-2-yl)piperidin-4-yl]-1H-pyrrole-2-carboxamide, DNA gyrase subunit B, MAGNESIUM ION Authors: Boriack-Sjodin, P.A, Prince, D.B, Eakin, A.E, Sherer, B.A. Deposit date: 2011-10-03 Release date: 2012-01-11 Last modified: 2024-02-28 Method: X-RAY DIFFRACTION (1.85 Å) Cite: Pyrrolamide DNA gyrase inhibitors: fragment-based nuclear magnetic resonance screening to identify antibacterial agents. Antimicrob.Agents Chemother., 56, 2012
3U2K	S. aureus GyrB ATPase domain in complex with a small molecule inhibitor Descriptor: 2-chloro-6-(4-{[(3,4-dichloro-5-methyl-1H-pyrrol-2-yl)carbonyl]amino}piperidin-1-yl)pyridine-4-carboxamide, DNA gyrase subunit B, MAGNESIUM ION Authors: Boriack-Sjodin, P.A, Prince, D.B, Eakin, A.E, Sherer, B.A. Deposit date: 2011-10-03 Release date: 2012-01-11 Last modified: 2024-02-28 Method: X-RAY DIFFRACTION (1.64 Å) Cite: Pyrrolamide DNA gyrase inhibitors: fragment-based nuclear magnetic resonance screening to identify antibacterial agents. Antimicrob.Agents Chemother., 56, 2012
3HUF	Structure of the S. pombe Nbs1-Ctp1 complex Descriptor: DNA repair and telomere maintenance protein nbs1, Double-strand break repair protein ctp1, THIOCYANATE ION Authors: Williams, R.S, Guenther, G, Tainer, J.A. Deposit date: 2009-06-13 Release date: 2009-10-13 Last modified: 2011-07-13 Method: X-RAY DIFFRACTION (2.15 Å) Cite: Nbs1 flexibly tethers Ctp1 and Mre11-Rad50 to coordinate DNA double-strand break processing and repair. Cell(Cambridge,Mass.), 139, 2009
6IYQ	Crystal structure of a DNA duplex cross-linked by 6-thioguanine-6-thioguanine disulfides Descriptor: DNA (5'-D(*CP*GP*CP*GP*AP*(S6G)P*(S6G)P*(BRU)P*CP*GP*CP*G)-3') Authors: Kondo, J, Ono, A, Atsugi, T. Deposit date: 2018-12-17 Release date: 2019-10-30 Last modified: 2024-03-27 Method: X-RAY DIFFRACTION (2.01 Å) Cite: Crystal structure of a DNA duplex cross-linked by 6-thioguanine-6-thioguanine disulfides: reversible formation and cleavage catalyzed by Cu(II) ion and glutathione Rsc Adv, 2019
3UEO	Crystal structure of TopBP1 BRCT4/5 domains in complex with a phospho-peptide Descriptor: DNA topoisomerase 2-binding protein 1, phospho-peptide Authors: Leung, C.C, Glover, J.N.M. Deposit date: 2011-10-31 Release date: 2013-07-03 Last modified: 2014-03-26 Method: X-RAY DIFFRACTION (2.6 Å) Cite: Structural insights into recognition of MDC1 by TopBP1 in DNA replication checkpoint control. Structure, 21, 2013
412D	DUPLEX [5'-D(GCGTA+TACGC)]2 WITH INCORPORATED 2'-O-METHYL-[TRI(OXYETHYL)] RIBONUCLEOSIDE Descriptor: DNA (5'-D(*GP*CP*GP*TP*AP*(126)P*AP*CP*GP*C)-3'), MAGNESIUM ION Authors: Tereshko, V, Portmann, S, Tay, E.C, Martin, P, Natt, F, Altmann, K.H, Egli, M. Deposit date: 1998-06-30 Release date: 1998-07-17 Last modified: 2024-02-28 Method: X-RAY DIFFRACTION (1.65 Å) Cite: Correlating structure and stability of DNA duplexes with incorporated 2'-O-modified RNA analogues. Biochemistry, 37, 1998

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