Loading
PDBj
MenuPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDBDonate
RCSB PDBPDBeBMRBAdv. SearchSearch help

5CDR
DownloadVisualize
BU of 5cdr by Molmil
2.65 structure of S.aureus DNA gyrase and artificially nicked DNA
Descriptor: DNA (5'-D(*AP*GP*CP*CP*GP*TP*AP*)-3'), DNA (5'-D(*AP*GP*CP*CP*GP*TP*AP*GP*GP*TP*AP*CP*CP*TP*AP*CP*GP*GP*CP*T)-3'), DNA (5'-D(*GP*GP*TP*AP*CP*CP*TP*AP*CP*GP*GP*CP*T)-3'), ...
Authors:Bax, B.D, Srikannathasan, V, Chan, P.F.
Deposit date:2015-07-04
Release date:2015-12-16
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2.65 Å)
Cite:Structural basis of DNA gyrase inhibition by antibacterial QPT-1, anticancer drug etoposide and moxifloxacin.
Nat Commun, 6, 2015
5CDP
DownloadVisualize
BU of 5cdp by Molmil
2.45A structure of etoposide with S.aureus DNA gyrase and DNA
Descriptor: (5S,5aR,8aR,9R)-9-(4-hydroxy-3,5-dimethoxyphenyl)-8-oxo-5,5a,6,8,8a,9-hexahydrofuro[3',4':6,7]naphtho[2,3-d][1,3]dioxol -5-yl 4,6-O-[(1R)-ethylidene]-beta-D-glucopyranoside, DNA (5'-D(*AP*GP*CP*CP*GP*TP*AP*G*GP*GP*TP*AP*CP*CP*TP*AP*CP*GP*GP*CP*T)-3'), DNA gyrase subunit A, ...
Authors:Bax, B.D, Srikannathasan, V, Chan, P.F.
Deposit date:2015-07-04
Release date:2015-12-16
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2.45 Å)
Cite:Structural basis of DNA gyrase inhibition by antibacterial QPT-1, anticancer drug etoposide and moxifloxacin.
Nat Commun, 6, 2015
4P58
DownloadVisualize
BU of 4p58 by Molmil
Crystal structure of mouse comt bound to an inhibitor
Descriptor: 1',3'-dimethyl-1H,1'H-3,4'-bipyrazole, Catechol O-methyltransferase
Authors:Lanier, M.
Deposit date:2014-03-15
Release date:2014-06-25
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (2.06 Å)
Cite:A fragment-based approach to identifying S-adenosyl-l-methionine -competitive inhibitors of catechol O-methyl transferase (COMT).
J.Med.Chem., 57, 2014
3HIE
DownloadVisualize
BU of 3hie by Molmil
Structure of the membrane-binding domain of the Sec3 subunit of the Exocyst complex
Descriptor: Exocyst complex component SEC3, PHOSPHATE ION
Authors:Baek, K, Dominguez, R.
Deposit date:2009-05-19
Release date:2010-02-23
Last modified:2024-11-27
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structure-function study of the N-terminal domain of exocyst subunit Sec3.
J.Biol.Chem., 285, 2010
3GBS
DownloadVisualize
BU of 3gbs by Molmil
Crystal structure of Aspergillus oryzae cutinase
Descriptor: Cutinase 1
Authors:Gosser, Y, Lu, Z, Alemu, G, Li, H, Kong, X, Liu, Z, Montclare, J.
Deposit date:2009-02-20
Release date:2009-10-06
Last modified:2024-11-20
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Structural and functional studies of Aspergillus oryzae cutinase: enhanced thermostability and hydrolytic activity of synthetic ester and polyester degradation.
J.Am.Chem.Soc., 131, 2009
5KX8
DownloadVisualize
BU of 5kx8 by Molmil
Irak4-inhibitor co-structure
Descriptor: Interleukin-1 receptor-associated kinase 4, ~{N}-(3-aminocarbonyl-1-methyl-pyrazol-4-yl)-5-piperazin-1-yl-pyrazolo[1,5-a]pyrimidine-3-carboxamide
Authors:Fischmann, T.O.
Deposit date:2016-07-20
Release date:2016-08-17
Last modified:2024-11-13
Method:X-RAY DIFFRACTION (2.671 Å)
Cite:Efforts towards the optimization of a bi-aryl class of potent IRAK4 inhibitors.
Bioorg.Med.Chem.Lett., 26, 2016
1WCT
DownloadVisualize
BU of 1wct by Molmil
A NOVEL CONOTOXIN FROM CONUS TEXTILE WITH UNUSUAL POST-TRANSLATIONAL MODIFICATIONS REDUCES PRESYNAPTIC CALCIUM INFLUX, NMR, 1 STRUCTURE, GLYCOSYLATED PROTEIN
Descriptor: OMEGAC-TXIX, beta-D-galactopyranose-(1-3)-2-acetamido-2-deoxy-beta-D-galactopyranose
Authors:Rigby, A.C, Hambe, B, Czerwiec, E, Baleja, J.D, Furie, B.C, Furie, B, Stenflo, J.
Deposit date:1998-12-18
Release date:1999-06-08
Last modified:2025-03-26
Method:SOLUTION NMR
Cite:A conotoxin from Conus textile with unusual posttranslational modifications reduces presynaptic Ca2+ influx.
Proc.Natl.Acad.Sci.USA, 96, 1999
5KX7
DownloadVisualize
BU of 5kx7 by Molmil
Irak4-inhibitor co-structure
Descriptor: Interleukin-1 receptor-associated kinase 4, ~{N}-(3-aminocarbonyl-1-methyl-pyrazol-4-yl)-6-(1-methylpyrazol-4-yl)pyridine-2-carboxamide
Authors:Fischmann, T.O.
Deposit date:2016-07-20
Release date:2016-08-17
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Efforts towards the optimization of a bi-aryl class of potent IRAK4 inhibitors.
Bioorg.Med.Chem.Lett., 26, 2016
8OLU
DownloadVisualize
BU of 8olu by Molmil
Leishmania tarentolae proteasome 20S subunit in complex with 1-Benzyl-N-(3-(cyclopropylcarbamoyl)phenyl)-6-oxo-1,6-dihydropyridazine-3-carboxamide
Descriptor: Proteasome alpha 1 subunit, putative, Proteasome alpha 5 subunit, ...
Authors:Rowland, P.
Deposit date:2023-03-30
Release date:2023-08-09
Last modified:2023-08-23
Method:ELECTRON MICROSCOPY (2.59 Å)
Cite:Structure-Guided Design and Synthesis of a Pyridazinone Series of Trypanosoma cruzi Proteasome Inhibitors.
J.Med.Chem., 66, 2023
5M2N
DownloadVisualize
BU of 5m2n by Molmil
Crystal Structure of Elongator subunit Elp2
Descriptor: Elongator complex protein 2
Authors:Glatt, S, Mueller, C.W.
Deposit date:2016-10-13
Release date:2016-12-28
Last modified:2024-11-13
Method:X-RAY DIFFRACTION (2.812 Å)
Cite:Architecture of the yeast Elongator complex.
EMBO Rep., 18, 2017
5LDN
DownloadVisualize
BU of 5ldn by Molmil
A viral capsid:antibody complex
Descriptor: Hexon protein,hexon capsid, antibody
Authors:James, L.
Deposit date:2016-06-27
Release date:2017-07-12
Last modified:2024-10-09
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Antibody-antigen kinetics constrain intracellular humoral immunity.
Sci Rep, 6, 2016
5MN2
DownloadVisualize
BU of 5mn2 by Molmil
Cocrystal structure of Fc gamma receptor IIIa interacting with Affimer G3, a specific binding protein which blocks IgG binding to the receptor.
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Affimer G3, DI(HYDROXYETHYL)ETHER, ...
Authors:Robinson, J.I, Owen, R.L, Tomlinson, D.C, Baxter, E.W, Nettleship, J.E, Waterhouse, M.P, Harris, S.A, Owens, R.J, McPherson, M.J, Morgan, A.W, Tiede, C, Goldman, A, Thomsen, M.
Deposit date:2016-12-12
Release date:2017-12-13
Last modified:2024-11-13
Method:X-RAY DIFFRACTION (2.35 Å)
Cite:Affimer proteins inhibit immune complex binding to Fc gamma RIIIa with high specificity through competitive and allosteric modes of action.
Proc. Natl. Acad. Sci. U.S.A., 115, 2018
2H9W
DownloadVisualize
BU of 2h9w by Molmil
Green fluorescent protein ground states: the influence of a second protonation site near the chromophore
Descriptor: Green fluorescent protein, SULFATE ION
Authors:Garau, G.
Deposit date:2006-06-12
Release date:2007-04-24
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (1.82 Å)
Cite:Green Fluorescent Protein Ground States: The Influence of a Second Protonation Site near the Chromophore.
Biochemistry, 46, 2007
3NOS
DownloadVisualize
BU of 3nos by Molmil
HUMAN ENDOTHELIAL NITRIC OXIDE SYNTHASE WITH ARGININE SUBSTRATE
Descriptor: 5,6,7,8-TETRAHYDROBIOPTERIN, ENDOTHELIAL NITRIC-OXIDE SYNTHASE, N-OMEGA-HYDROXY-L-ARGININE, ...
Authors:Fischmann, T.O, Weber, P.C.
Deposit date:1999-02-03
Release date:2000-02-04
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Structural characterization of nitric oxide synthase isoforms reveals striking active-site conservation.
Nat.Struct.Biol., 6, 1999
9CXR
DownloadVisualize
BU of 9cxr by Molmil
X-ray Crystallographic Structure of the Poly(Hexamethylene Adipamide) (Nylon66) Hydrolase Nyl50 at Room Temperature
Descriptor: 1,2-ETHANEDIOL, Poly(hexamethylene adipamide) hydrolase, SODIUM ION, ...
Authors:Meilleur, F, Williams, A.N, Drufva, E.E, Parks, J.M, Chen, S.H, Michener, J.K.
Deposit date:2024-07-31
Release date:2025-01-29
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Identification and characterization of substrate- and product-selective nylon hydrolases.
Biorxiv, 2024
6GFJ
DownloadVisualize
BU of 6gfj by Molmil
Structure of RIP2 CARD domain fused to crystallisable MBP tag
Descriptor: Sugar ABC transporter substrate-binding protein,Receptor-interacting serine/threonine-protein kinase 2, alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose
Authors:Pellegrini, E, Cusack, S.
Deposit date:2018-04-30
Release date:2019-03-13
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (3.3 Å)
Cite:RIP2 filament formation is required for NOD2 dependent NF-kappa B signalling.
Nat Commun, 9, 2018
1DXS
DownloadVisualize
BU of 1dxs by Molmil
Crystal structure of the C-terminal sterile alpha motif (SAM) domain of human p73 alpha splice variant
Descriptor: P53-LIKE TRANSCRIPTION FACTOR
Authors:Wang, W.K, Chen, Y.W.
Deposit date:2000-01-15
Release date:2001-01-12
Last modified:2023-12-06
Method:X-RAY DIFFRACTION (2.54 Å)
Cite:Structure of the C-Terminal Sterile Alpha-Motif (Sam) Domain of Human P73 Alpha
Acta Crystallogr.,Sect.D, 57, 2001
3RDC
DownloadVisualize
BU of 3rdc by Molmil
Human Cyclophilin D Complexed with an Inhibitor
Descriptor: Peptidyl-prolyl cis-trans isomerase F, mitochondrial, ethyl N-[(4-aminobenzyl)carbamoyl]glycinate
Authors:Colliandre, L, Ahmed-Belkacem, H, Bessin, Y, Pawlotsky, J.M, Guichou, J.F.
Deposit date:2011-04-01
Release date:2012-03-21
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (1.94 Å)
Cite:Combining 'dry' co-crystallization and in situ diffraction to facilitate ligand screening by X-ray crystallography.
Acta Crystallogr.,Sect.D, 71, 2015
9DYS
DownloadVisualize
BU of 9dys by Molmil
X-ray Crystallographic Structure of the Poly(Hexamethylene Adipamide) (Nylon66) Hydrolase Nyl50 at Room Temperature bound to tetraethylene glycol
Descriptor: 1,2-ETHANEDIOL, Poly(hexamethylene adipamide) hydrolase, SODIUM ION, ...
Authors:Capra, N, Meilleur, F.
Deposit date:2024-10-14
Release date:2025-01-29
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Identification and characterization of substrate- and product-selective nylon hydrolases.
Biorxiv, 2024
6M7W
DownloadVisualize
BU of 6m7w by Molmil
Role of the highly conserved G68 residue in the yeast phosphorelay protein Ypd1: implications for interactions between histidine phosphotransfer (HPt) and response regulator proteins
Descriptor: Phosphorelay intermediate protein YPD1
Authors:Menon, S.K, Soni, K.S, West, A.H.
Deposit date:2018-08-21
Release date:2019-02-06
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.98 Å)
Cite:Role of the highly conserved G68 residue in the yeast phosphorelay protein Ypd1: implications for interactions between histidine phosphotransfer (HPt) and response regulator proteins.
BMC Biochem., 20, 2019
8BRK
DownloadVisualize
BU of 8brk by Molmil
Room temperature crystal structure of cytochrome c' from Thermus thermophilus
Descriptor: HEME C, Probable cytochrome
Authors:Fujii, S, Hough, M.A.
Deposit date:2022-11-23
Release date:2023-05-24
Last modified:2024-10-23
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Protein-to-structure pipeline for ambient-temperature in situ crystallography at VMXi.
Iucrj, 10, 2023
8BRL
DownloadVisualize
BU of 8brl by Molmil
Room temperature crystal structure of cytochrome c' from Hydrogenophilus thermoluteolus
Descriptor: Cytochrome c prime, HEME C, SULFATE ION
Authors:Fujii, S, Hough, M.A.
Deposit date:2022-11-23
Release date:2023-05-24
Last modified:2024-11-20
Method:X-RAY DIFFRACTION (1.88 Å)
Cite:Protein-to-structure pipeline for ambient-temperature in situ crystallography at VMXi.
Iucrj, 10, 2023
3BJI
DownloadVisualize
BU of 3bji by Molmil
Structural Basis of Promiscuous Guanine Nucleotide Exchange by the T-Cell Essential Vav1
Descriptor: Proto-oncogene vav, Ras-related C3 botulinum toxin substrate 1 precursor, ZINC ION
Authors:Chrencik, J.E, Brooun, A, Kuhn, P, Accelerated Technologies Center for Gene to 3D Structure (ATCG3D)
Deposit date:2007-12-04
Release date:2008-07-15
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Structural basis of guanine nucleotide exchange mediated by the T-cell essential Vav1.
J.Mol.Biol., 380, 2008
3ASW
DownloadVisualize
BU of 3asw by Molmil
Structural and biochemical characterization of ClfB:ligand interactions
Descriptor: Clumping factor B, Tail region derived peptide
Authors:Ganesh, V.K.
Deposit date:2010-12-22
Release date:2011-05-04
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Structural and biochemical characterization of ClfB:ligand interactions
To be published
8BP0
DownloadVisualize
BU of 8bp0 by Molmil
Crystal structure of BHMeHis1.8, an engineered enzyme for the Morita-Baylis-Hillman reaction
Descriptor: 1,2-ETHANEDIOL, BHMeHis1.8, TRIETHYLENE GLYCOL
Authors:Hardy, F.J.
Deposit date:2022-11-15
Release date:2024-02-28
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.621 Å)
Cite:A non-canonical nucleophile unlocks a new mechanistic pathway in a designed enzyme.
Nat Commun, 15, 2024

238582

數據於2025-07-09公開中

PDB statisticsPDBj update infoContact PDBjnumon