Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

8WQX
DownloadVisualize
BU of 8wqx by Molmil
Fe-O nanocluster of form-X in the 4-fold channel of Ureaplasma diversum ferritin
Descriptor: FE (III) ION, ferritin
Authors:Wang, W.M, Ma, D.Y, Gong, W.J, Wu, L.J, Wang, H.F.
Deposit date:2023-10-12
Release date:2024-06-12
Method:ELECTRON MICROSCOPY (3.2 Å)
Cite:Growth Process of Fe-O Nanoclusters with Different Sizes Biosynthesized by Protein Nanocages.
J.Am.Chem.Soc., 146, 2024
7RRP
DownloadVisualize
BU of 7rrp by Molmil
Apoferritin structure at 1.27 angstrom resolution determined from a 300 kV Titan Krios G3i electron microscope with Falcon4 detector
Descriptor: Ferritin heavy chain, SODIUM ION, ZINC ION
Authors:Pintilie, G, Zhang, K, Chiu, W.
Deposit date:2021-08-10
Release date:2021-08-18
Last modified:2024-06-05
Method:ELECTRON MICROSCOPY (1.27 Å)
Cite:Resolving individual atoms of protein complex by cryo-electron microscopy.
Cell Res., 30, 2020
6D9F
DownloadVisualize
BU of 6d9f by Molmil
Protein 60 with aldehyde deformylating oxidase activity from Kitasatospora setae
Descriptor: 1,2-ETHANEDIOL, FE (III) ION, Putative VlmB homolog, ...
Authors:Arenas, R, Wilson, D.K, Mak, W.S, Siegel, J.B.
Deposit date:2018-04-28
Release date:2019-05-08
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.03 Å)
Cite:Discovery, Design, and Structural Characterization of Alkane-Producing Enzymes across the Ferritin-like Superfamily.
Biochemistry, 59, 2020
6SEV
DownloadVisualize
BU of 6sev by Molmil
Structure of Dps from Listeria innocua soaked with 10 mM zinc for 120 minutes
Descriptor: DNA starvation/stationary phase protection protein, ZINC ION
Authors:Zeth, K, Okuda, M.
Deposit date:2019-07-30
Release date:2019-09-25
Last modified:2024-05-15
Method:X-RAY DIFFRACTION (2 Å)
Cite:Metal Positions and Translocation Pathways of the Dodecameric Ferritin-like Protein Dps.
Inorg.Chem., 58, 2019
2ZG9
DownloadVisualize
BU of 2zg9 by Molmil
Crystal Structure of Pd(allyl)/apo-H114AFr
Descriptor: 1,2-ETHANEDIOL, CADMIUM ION, Ferritin light chain, ...
Authors:Abe, S, Niemeyer, J, Abe, M, Ueno, T, Hikage, T, Erker, G, Watanabe, Y.
Deposit date:2008-01-18
Release date:2008-08-26
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Control of the coordination structure of organometallic palladium complexes in an apo-ferritin cage.
J.Am.Chem.Soc., 130, 2008
7K3V
DownloadVisualize
BU of 7k3v by Molmil
Apoferritin structure at 1.34 angstrom resolution determined from a 300 kV Titan Krios G3i electron microscope with K3 detector
Descriptor: Ferritin heavy chain, SODIUM ION, ZINC ION
Authors:Zhang, K, Pintilie, G, Li, S, Schmid, M, Chiu, W.
Deposit date:2020-09-14
Release date:2020-11-18
Last modified:2024-03-06
Method:ELECTRON MICROSCOPY (1.34 Å)
Cite:Resolving individual atoms of protein complex by cryo-electron microscopy.
Cell Res., 30, 2020
7K3W
DownloadVisualize
BU of 7k3w by Molmil
Apoferritin structure at 1.36 angstrom resolution determined from a 300 kV Titan Krios G3i electron microscope with Falcon4 detector
Descriptor: Ferritin heavy chain, SODIUM ION, ZINC ION
Authors:Zhang, K, Pintilie, G, Li, S, Schmid, M, Chiu, W.
Deposit date:2020-09-14
Release date:2020-11-18
Last modified:2024-03-06
Method:ELECTRON MICROSCOPY (1.36 Å)
Cite:Resolving individual atoms of protein complex by cryo-electron microscopy.
Cell Res., 30, 2020
2ZG7
DownloadVisualize
BU of 2zg7 by Molmil
Crystal Structure of Pd(allyl)/apo-Fr
Descriptor: 1,2-ETHANEDIOL, CADMIUM ION, Ferritin light chain, ...
Authors:Abe, S, Niemeyer, J, Abe, M, Ueno, T, Hikage, T, Erker, G, Watanabe, Y.
Deposit date:2008-01-18
Release date:2008-08-26
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Control of the coordination structure of organometallic palladium complexes in an apo-ferritin cage.
J.Am.Chem.Soc., 130, 2008
1BKA
DownloadVisualize
BU of 1bka by Molmil
OXALATE-SUBSTITUTED DIFERRIC LACTOFERRIN
Descriptor: FE (III) ION, LACTOFERRIN, OXALATE ION
Authors:Baker, H.M, Smith, C.A, Baker, E.N.
Deposit date:1996-04-15
Release date:1996-11-08
Last modified:2024-06-05
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Anion binding by transferrins: importance of second-shell effects revealed by the crystal structure of oxalate-substituted diferric lactoferrin.
Biochemistry, 35, 1996
2ZG8
DownloadVisualize
BU of 2zg8 by Molmil
Crystal Structure of Pd(allyl)/apo-H49AFr
Descriptor: 1,2-ETHANEDIOL, CADMIUM ION, Ferritin light chain, ...
Authors:Abe, S, Niemeyer, J, Abe, M, Ueno, T, Hikage, T, Erker, G, Watanabe, Y.
Deposit date:2008-01-18
Release date:2008-08-26
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Control of the coordination structure of organometallic palladium complexes in an apo-ferritin cage.
J.Am.Chem.Soc., 130, 2008
1EH3
DownloadVisualize
BU of 1eh3 by Molmil
R210K N-TERMINAL LOBE HUMAN LACTOFERRIN
Descriptor: CARBONATE ION, FE (III) ION, LACTOFERRIN
Authors:Peterson, N.A, Anderson, B.F, Jameson, G.B, Tweedie, J.W, Baker, E.N.
Deposit date:2000-02-18
Release date:2000-03-01
Last modified:2021-11-03
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal structure and iron-binding properties of the R210K mutant of the N-lobe of human lactoferrin: implications for iron release from transferrins.
Biochemistry, 39, 2000
6IPC
DownloadVisualize
BU of 6ipc by Molmil
Non-native human ferritin 8-mer
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, Ferritin heavy chain
Authors:Zang, J.C, Chen, H, Zhao, G.
Deposit date:2018-11-03
Release date:2019-03-13
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (4.443 Å)
Cite:Disulfide-mediated conversion of 8-mer bowl-like protein architecture into three different nanocages.
Nat Commun, 10, 2019
8WR0
DownloadVisualize
BU of 8wr0 by Molmil
Fe-O nanocluster of form-XII in the 4-fold channel of Ureaplasma diversum ferritin
Descriptor: FE (III) ION, ferritin
Authors:Wang, W.M, Ma, D.Y, Gong, W.J, Wu, L.J, Wang, H.F.
Deposit date:2023-10-12
Release date:2024-06-12
Method:ELECTRON MICROSCOPY (3.1 Å)
Cite:Growth Process of Fe-O Nanoclusters with Different Sizes Biosynthesized by Protein Nanocages.
J.Am.Chem.Soc., 146, 2024
8W7T
DownloadVisualize
BU of 8w7t by Molmil
Fe-O nanocluster of form-VII in the 4-fold channel of Ureaplasma diversum ferritin
Descriptor: CHLORIDE ION, FE (III) ION, Ferritin, ...
Authors:Wang, W.M, Xi, H.F, Gong, W.J, Ma, D.Y, Wang, H.F.
Deposit date:2023-08-31
Release date:2024-06-12
Method:X-RAY DIFFRACTION (2.499 Å)
Cite:Growth Process of Fe-O Nanoclusters with Different Sizes Biosynthesized by Protein Nanocages.
J.Am.Chem.Soc., 146, 2024
8W79
DownloadVisualize
BU of 8w79 by Molmil
Fe-O nanocluster of form-III in the 4-fold channel of Ureaplasma diversum ferritin
Descriptor: FE (III) ION, Ferritin
Authors:Wang, W.M, Xi, H.F, Gong, W.J, Ma, D.Y, Wang, H.F.
Deposit date:2023-08-30
Release date:2024-06-12
Method:X-RAY DIFFRACTION (2.697 Å)
Cite:Growth Process of Fe-O Nanoclusters with Different Sizes Biosynthesized by Protein Nanocages.
J.Am.Chem.Soc., 146, 2024
8WPT
DownloadVisualize
BU of 8wpt by Molmil
Truncated mutant (1-171) of ferritin from Ureaplasma diversum
Descriptor: CHLORIDE ION, FE (III) ION, Truncated ferritin
Authors:Wang, W.M, Xi, H.F, Gong, W.J, Ma, D.Y, Wang, H.F.
Deposit date:2023-10-10
Release date:2024-06-12
Method:X-RAY DIFFRACTION (2.36 Å)
Cite:Growth Process of Fe-O Nanoclusters with Different Sizes Biosynthesized by Protein Nanocages.
J.Am.Chem.Soc., 146, 2024
8W7O
DownloadVisualize
BU of 8w7o by Molmil
Fe-O nanocluster of form-V in the 4-fold channel of Ureaplasma diversum ferritin
Descriptor: FE (III) ION, Ferritin, MAGNESIUM ION
Authors:Wang, W.M, Xi, H.F, Gong, W.J, Ma, D.Y, Wang, H.F.
Deposit date:2023-08-31
Release date:2024-06-12
Method:X-RAY DIFFRACTION (2.399 Å)
Cite:Growth Process of Fe-O Nanoclusters with Different Sizes Biosynthesized by Protein Nanocages.
J.Am.Chem.Soc., 146, 2024
8W7U
DownloadVisualize
BU of 8w7u by Molmil
Mutant of ferritin from Ureaplasma diversum (Udif-E164A-E168A) without soaking
Descriptor: FE (III) ION, Ferritin, MAGNESIUM ION
Authors:Wang, W.M, Xi, H.F, Gong, W.J, Ma, D.Y, Wang, H.F.
Deposit date:2023-08-31
Release date:2024-06-12
Method:X-RAY DIFFRACTION (2.502 Å)
Cite:Growth Process of Fe-O Nanoclusters with Different Sizes Biosynthesized by Protein Nanocages.
J.Am.Chem.Soc., 146, 2024
8WQY
DownloadVisualize
BU of 8wqy by Molmil
Fe-O nanocluster of form-XI in the 4-fold channel of Ureaplasma diversum ferritin
Descriptor: FE (III) ION, ferritin
Authors:Wang, W.M, Ma, D.Y, Gong, W.J, Wu, L.J, Wang, H.F.
Deposit date:2023-10-12
Release date:2024-06-12
Method:ELECTRON MICROSCOPY (3 Å)
Cite:Growth Process of Fe-O Nanoclusters with Different Sizes Biosynthesized by Protein Nanocages.
J.Am.Chem.Soc., 146, 2024
8W74
DownloadVisualize
BU of 8w74 by Molmil
Fe-O nanocluster of form-II in the 4-fold channel of Ureaplasma diversum ferritin
Descriptor: FE (III) ION, Ferritin
Authors:Wang, W.M, Xi, H.F, Gong, W.J, Ma, D.Y, Wang, H.F.
Deposit date:2023-08-30
Release date:2024-06-12
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Growth Process of Fe-O Nanoclusters with Different Sizes Biosynthesized by Protein Nanocages.
J.Am.Chem.Soc., 146, 2024
8W7B
DownloadVisualize
BU of 8w7b by Molmil
Fe-O nanocluster of form-IV in the 4-fold channel of Ureaplasma diversum ferritin
Descriptor: FE (III) ION, Ferritin
Authors:Wang, W.M, Xi, H.F, Gong, W.J, Ma, D.Y, Wang, H.F.
Deposit date:2023-08-30
Release date:2024-06-12
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Growth Process of Fe-O Nanoclusters with Different Sizes Biosynthesized by Protein Nanocages.
J.Am.Chem.Soc., 146, 2024
8W7Q
DownloadVisualize
BU of 8w7q by Molmil
Fe-O nanocluster of form-VI in the 4-fold channel of Ureaplasma diversum ferritin
Descriptor: CHLORIDE ION, FE (III) ION, Ferritin, ...
Authors:Wang, W.M, Xi, H.F, Gong, W.J, Ma, D.Y, Wang, H.F.
Deposit date:2023-08-31
Release date:2024-06-12
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Growth Process of Fe-O Nanoclusters with Different Sizes Biosynthesized by Protein Nanocages.
J.Am.Chem.Soc., 146, 2024
8WPV
DownloadVisualize
BU of 8wpv by Molmil
Truncated mutant (1-171) of ferritin from Ureaplasma diversum soaked in Fe2+ solution for 30min
Descriptor: CHLORIDE ION, FE (III) ION, MAGNESIUM ION, ...
Authors:Wang, W.M, Xi, H.F, Gong, W.J, Ma, D.Y, Wang, H.F.
Deposit date:2023-10-10
Release date:2024-06-12
Method:X-RAY DIFFRACTION (2.059 Å)
Cite:Growth Process of Fe-O Nanoclusters with Different Sizes Biosynthesized by Protein Nanocages.
J.Am.Chem.Soc., 146, 2024
2QQY
DownloadVisualize
BU of 2qqy by Molmil
Crystal structure of ferritin like, diiron-carboxylate proteins from Bacillus anthracis str. Ames
Descriptor: Sigma B operon
Authors:Kim, Y, Joachimiak, G, Wu, R, Patterson, S, Gornicki, P, Joachimiak, A, Midwest Center for Structural Genomics (MCSG)
Deposit date:2007-07-27
Release date:2007-08-14
Last modified:2017-10-25
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal Structure of Ferritin like, Diiron-carboxylate Proteins from Bacillus anthracis str. Ames.
To be Published
3V8X
DownloadVisualize
BU of 3v8x by Molmil
The crystal structure of transferrin binding protein A (TbpA) from Neisserial meningitidis serogroup B in complex with full length human transferrin
Descriptor: (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTANE, N-acetyl-alpha-neuraminic acid-(2-6)-beta-D-galactopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-alpha-D-mannopyranose-(1-3)-[beta-D-galactopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, N-acetyl-alpha-neuraminic acid-(2-6)-beta-D-galactopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-alpha-D-mannopyranose-(1-6)-[2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-alpha-D-mannopyranose-(1-3)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ...
Authors:Noinaj, N, Easley, N, Buchanan, S.K.
Deposit date:2011-12-23
Release date:2012-02-29
Last modified:2020-07-29
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Structural basis for iron piracy by pathogenic Neisseria.
Nature, 483, 2012

221716

數據於2024-06-26公開中

PDB statisticsPDBj update infoContact PDBjnumon