PDB: 45953 resultsInfo pagesStatus searchChemie searchBIRD

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5GWL	Structure of two CCTG repeats Descriptor: DNA (5'-D(*CP*CP*TP*GP*CP*CP*TP*G)-3'), SODIUM ION Authors: Guo, P, Lam, S.L. Deposit date: 2016-09-12 Release date: 2016-10-12 Last modified: 2024-05-01 Method: SOLUTION NMR Cite: Minidumbbell: A New Form of Native DNA Structure J.Am.Chem.Soc., 138, 2016
5GWQ	Structure of two TTTA repeats Descriptor: DNA (5'-D(*TP*TP*TP*AP*TP*TP*TP*A)-3'), SODIUM ION Authors: Guo, P, Lam, S.L. Deposit date: 2016-09-13 Release date: 2016-10-12 Last modified: 2024-05-01 Method: SOLUTION NMR Cite: Minidumbbell: A New Form of Native DNA Structure J.Am.Chem.Soc., 138, 2016
7XFJ	Structure of nucleosome-AAG complex (T-50I, post-catalytic state) Descriptor: DNA (152-MER), DNA-3-methyladenine glycosylase, Histone H2A type 1, ... Authors: Zheng, L, Tsai, B, Gao, N. Deposit date: 2022-04-01 Release date: 2023-11-08 Method: ELECTRON MICROSCOPY (3 Å) Cite: Structural and mechanistic insights into the DNA glycosylase AAG-mediated base excision in nucleosome. Cell Discov, 9, 2023
8W50	Crystal structure of DNA binding and cleavage core of human topoisomerase 2-alpha in a DNA binding-competent conformation Descriptor: DNA topoisomerase 2-alpha, SULFATE ION Authors: Chan, N.L, Liu, K.T, Chen, S.F. Deposit date: 2023-08-25 Release date: 2024-07-24 Method: X-RAY DIFFRACTION (2.67 Å) Cite: Structural Basis for the Assembly of Type IIA Topoisomerase DNA Cleavage/Religation Center To Be Published
5Z69	Structure of the recombination mediator protein RecF-ATPrS in RecFOR pathway Descriptor: DNA replication and repair protein RecF, PHOSPHOTHIOPHOSPHORIC ACID-ADENYLATE ESTER Authors: Tang, Q, Liu, Y.-P, Yan, X.-X. Deposit date: 2018-01-22 Release date: 2018-10-17 Method: X-RAY DIFFRACTION (2.102 Å) Cite: ATP-dependent conformational change in ABC-ATPase RecF serves as a switch in DNA repair. Sci Rep, 8, 2018
5KES	Solution structure of the yeast Ddi1 HDD domain Descriptor: DNA damage-inducible protein 1 Authors: Trempe, J.-F, Ratcliffe, C, Veverka, V, Saskova, K, Gehring, K. Deposit date: 2016-06-10 Release date: 2016-10-05 Last modified: 2024-05-15 Method: SOLUTION NMR Cite: Structural studies of the yeast DNA damage-inducible protein Ddi1 reveal domain architecture of this eukaryotic protein family. Sci Rep, 6, 2016
3EUS	The crystal structure of the DNA binding protein from Silicibacter pomeroyi Descriptor: DNA-binding protein Authors: Zhang, R, Li, H, Freeman, L, Joachimiak, A, Midwest Center for Structural Genomics (MCSG) Deposit date: 2008-10-10 Release date: 2008-11-25 Last modified: 2023-12-27 Method: X-RAY DIFFRACTION (1.8 Å) Cite: The crystal structure of the DNA binding protein from Silicibacter pomeroyi To be Published
337D	STRUCTURAL PARAMETERS FROM SINGLE-CRYSTAL STRUCTURES FOR ACCURATE MODELS OF A-DNA Descriptor: DNA (5'-D(*GP*CP*GP*(5CM)P*GP*(5CM)P*GP*C)-3') Authors: Mooers, B.H.M, Eichman, B.F, Ho, P.S. Deposit date: 1997-06-26 Release date: 1997-07-21 Last modified: 2024-02-21 Method: X-RAY DIFFRACTION (1.85 Å) Cite: Structural Parameters from Single-Crystal Structures for Accurate Models of A-DNA To be Published
3E7H	The crystal structure of the beta subunit of the DNA-directed RNA polymerase from Vibrio cholerae O1 biovar eltor Descriptor: DNA-directed RNA polymerase subunit beta Authors: Zhang, R, Wu, R, Freeman, L, Joachimiak, A, Midwest Center for Structural Genomics (MCSG) Deposit date: 2008-08-18 Release date: 2008-10-14 Last modified: 2024-02-21 Method: X-RAY DIFFRACTION (1.7 Å) Cite: The crystal structure of the beta subunit of the DNA-directed RNA polymerase from Vibrio cholerae O1 biovar eltor To be Published
6VCS	SRA domain of UHRF1 in complex with DNA Descriptor: DNA (5'-D(*GP*CP*CP*TP*GP*TP*AP*CP*AP*GP*GP*C)-3'), E3 ubiquitin-protein ligase UHRF1, UNK-UNK-UNK-UNK, ... Authors: Dong, C, Tempel, W, Bountra, C, Edwards, A.M, Arrowsmith, C.H, Min, J, Structural Genomics Consortium (SGC) Deposit date: 2019-12-22 Release date: 2020-03-04 Last modified: 2023-10-11 Method: X-RAY DIFFRACTION (1.7 Å) Cite: SRA domain of UHRF1 in complex with DNA To Be Published
2IUT	P. aeruginosa FtsK motor domain, dimeric Descriptor: DNA TRANSLOCASE FTSK, MAGNESIUM ION, PHOSPHOTHIOPHOSPHORIC ACID-ADENYLATE ESTER Authors: Massey, T.H, Mercogliano, C.P, Yates, J, Sherratt, D.J, Lowe, J. Deposit date: 2006-06-07 Release date: 2006-08-29 Last modified: 2024-05-08 Method: X-RAY DIFFRACTION (2.25 Å) Cite: Double-Stranded DNA Translocation: Structure and Mechanism of Hexameric Ftsk Mol.Cell, 23, 2006
4G0F	Crystal structure of the complex of a human telomeric repeat G-quadruplex and N-methyl mesoporphyrin IX (P6) Descriptor: DNA (5'-D(*AP*GP*GP*GP*TP*TP*AP*GP*GP*GP*TP*TP*AP*GP*GP*GP*TP*TP*AP*GP*GP*G)-3'), N-METHYLMESOPORPHYRIN, POTASSIUM ION Authors: Nicoludis, J.M, Miller, S.T, Jeffrey, P, Lawton, T.J, Rosenzweig, A.C, Yatsunyk, L.A. Deposit date: 2012-07-09 Release date: 2012-12-26 Last modified: 2024-02-28 Method: X-RAY DIFFRACTION (2.15 Å) Cite: Optimized End-Stacking Provides Specificity of N-Methyl Mesoporphyrin IX for Human Telomeric G-Quadruplex DNA. J.Am.Chem.Soc., 134, 2012
8OEX	Crystal structure of the native Z-DNA duplex d(CGCGCG) before soaking of CuCl2 Descriptor: DNA (5'-D(*CP*GP*CP*GP*CP*G)-3'), SPERMINE Authors: Lambert, M.C, Hall, J.P. Deposit date: 2023-03-13 Release date: 2024-03-27 Method: X-RAY DIFFRACTION (1.07 Å) Cite: Structural analysis of peroxide-soaked DNA crystals containing ordered copper binding sites: towards understanding oxidative damage at the atomic scale To Be Published
8OE9	Crystal structure of the Z-DNA duplex d(CGCGCG) soaked in copper(II) chloride and hydrogen peroxide Descriptor: DNA (5'-D(*CP*GP*CP*GP*CP*G)-3'), SPERMINE Authors: Lambert, M.C, Hall, J.P. Deposit date: 2023-03-10 Release date: 2024-03-27 Method: X-RAY DIFFRACTION (1.04 Å) Cite: Structural analysis of peroxide-soaked DNA crystals containing ordered copper binding sites: towards understanding oxidative damage at the atomic scale To Be Published
3C2J	Crystal structure analysis of trioxacarcin A covalently bound to d(AACCGGTT) Descriptor: DNA (5'-D(*DAP*DAP*DCP*DCP*DGP*DGP*DTP*DT)-3'), Trioxacarcin A Authors: Pfoh, R, Sheldrick, G.M. Deposit date: 2008-01-25 Release date: 2008-06-03 Last modified: 2024-03-13 Method: X-RAY DIFFRACTION (1.78 Å) Cite: Crystal structure of trioxacarcin A covalently bound to DNA Nucleic Acids Res., 36, 2008
4FXM	Crystal structure of the complex of a human telomeric repeat G-quadruplex and N-methyl mesoporphyrin IX (P21212) Descriptor: DNA (5'-D(*AP*GP*GP*GP*TP*TP*AP*GP*GP*GP*TP*TP*AP*GP*GP*GP*TP*TP*AP*GP*GP*G)-3'), N-METHYLMESOPORPHYRIN, POTASSIUM ION Authors: Nicoludis, J.M, Miller, S.T, Jeffrey, P, Lawton, T.J, Rosenzweig, A.C, Yatsunyk, L.A. Deposit date: 2012-07-03 Release date: 2012-12-26 Last modified: 2023-09-13 Method: X-RAY DIFFRACTION (1.651 Å) Cite: Optimized End-Stacking Provides Specificity of N-Methyl Mesoporphyrin IX for Human Telomeric G-Quadruplex DNA. J.Am.Chem.Soc., 134, 2012
5V3G	PRDM9-allele-C ZnF8-13 Descriptor: DNA (5'-D(*AP*GP*GP*GP*CP*AP*AP*CP*GP*CP*TP*CP*AP*CP*TP*GP*GP*GP*GP*TP*C)-3'), DNA (5'-D(*TP*GP*AP*CP*CP*CP*CP*AP*GP*TP*GP*AP*GP*CP*GP*TP*TP*GP*CP*CP*C)-3'), PR domain zinc finger protein 9, ... Authors: Patel, A, Cheng, X. Deposit date: 2017-03-07 Release date: 2017-08-23 Last modified: 2024-03-06 Method: X-RAY DIFFRACTION (2.416 Å) Cite: Structural basis of human PR/SET domain 9 (PRDM9) allele C-specific recognition of its cognate DNA sequence. J. Biol. Chem., 292, 2017
1IQR	Crystal structure of DNA photolyase from Thermus thermophilus Descriptor: FLAVIN-ADENINE DINUCLEOTIDE, PHOSPHATE ION, photolyase Authors: Komori, H, Masui, R, Kuramitsu, S, Yokoyama, S, Shibata, T, Inoue, Y, Miki, K, RIKEN Structural Genomics/Proteomics Initiative (RSGI) Deposit date: 2001-07-27 Release date: 2001-11-28 Last modified: 2023-12-27 Method: X-RAY DIFFRACTION (2.1 Å) Cite: Crystal structure of thermostable DNA photolyase: pyrimidine-dimer recognition mechanism. Proc.Natl.Acad.Sci.USA, 98, 2001
8JCD	Human H2BFWTH100R nucleosome with 601 DNA Descriptor: DNA (147-MER), Histone H2A type 1-B/E, Histone H2B type W-T, ... Authors: Ding, D.B, Ishibashi, T, Nguyen, T.T. Deposit date: 2023-05-11 Release date: 2024-05-15 Method: ELECTRON MICROSCOPY (3.14 Å) Cite: Human H2BFWTH100R nucleosome with 601 DNA to be published
8JBX	Human canonical 601 DNA nucleosome Descriptor: DNA (147-MER), Histone H2A type 1-B/E, Histone H2B type 1-C/E/F/G/I, ... Authors: Ding, D.B, Ishibashi, T, Nguyen, T.T. Deposit date: 2023-05-09 Release date: 2024-05-15 Method: ELECTRON MICROSCOPY (3.35 Å) Cite: Human canonical 601 DNA nucleosome to be published
2N3M	G-quadruplex structure of an anti-proliferative DNA sequence Descriptor: DNA_(28-MER) Authors: Do, N.Q, Chung, W.J, Truong, T.H.A, Heddi, B, Phan, A.T. Deposit date: 2015-06-05 Release date: 2016-07-06 Last modified: 2024-05-15 Method: SOLUTION NMR Cite: G-quadruplex structure of an anti-proliferative DNA sequence To be Published
4IM9	Cystal structure of DnaG primase C-terminal domain from Vibrio cholerae Descriptor: DNA primase Authors: Abdul Rehman, S.A, Tarique, K.F, Gourinath, S. Deposit date: 2013-01-02 Release date: 2014-05-07 Method: X-RAY DIFFRACTION (2.46 Å) Cite: Cystal structure of DnaG primase C-terminal domain from Vibrio cholerae To be Published
7VP2	Structure of a transcription factor and DNA complex Descriptor: DNA (5'-D(*AP*TP*GP*TP*GP*GP*TP*CP*CP*CP*CP*AP*CP*T)-3'), DNA (5'-D(*TP*AP*GP*TP*GP*GP*GP*GP*AP*CP*CP*AP*CP*A)-3'), Transcription factor TCP10 Authors: Zhang, Y, Xu, Y.P, Wang, B, Su, X.D. Deposit date: 2021-10-15 Release date: 2022-10-19 Last modified: 2023-11-29 Method: X-RAY DIFFRACTION (1.92 Å) Cite: Structural basis for DNA recognition by TCP transcription factors To Be Published
7VP4	Structure of a transcription factor and DNA complex Descriptor: DNA (5'-D(*AP*TP*GP*TP*GP*GP*TP*CP*CP*CP*CP*AP*GP*T)-3'), DNA (5'-D(*TP*AP*CP*TP*GP*GP*GP*GP*AP*CP*CP*AP*CP*A)-3'), Transcription factor TCP10 Authors: Zhang, Y, Xu, Y.P, Wang, B, Su, X.D. Deposit date: 2021-10-15 Release date: 2022-10-19 Last modified: 2023-11-29 Method: X-RAY DIFFRACTION (3.04 Å) Cite: Structural basis for DNA recognition by TCP transcription factors To Be Published
2WTF	DNA polymerase eta in complex with the cis-diammineplatinum (II) 1,3- GTG intrastrand cross-link Descriptor: 2'-DEOXYADENOSINE 5'-TRIPHOSPHATE, 5'-D(*GP*TP*GP*GP*TP*GP*AP*GP*CP)-3', 5'-D(*TP*CP*TP*TP*CP*TP*GP*TP*GP*CP *TP*CP*AP*CP*CP*AP*CP)-3', ... Authors: Reissner, T, Schneider, S, Ziv, O, Schorr, S, Livneh, Z, Carell, T. Deposit date: 2009-09-16 Release date: 2010-03-31 Last modified: 2023-12-20 Method: X-RAY DIFFRACTION (2.5 Å) Cite: Crystal Structure of a Cisplatin-(1,3-Gtg) Cross-Link within DNA Polymerase Eta. Angew.Chem.Int.Ed.Engl., 49, 2010

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