PDB: 72678 resultsInfo pagesStatus searchChemie searchBIRD

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3O8C	Visualizing ATP-dependent RNA Translocation by the NS3 Helicase from HCV Descriptor: HCV NS3 protease/helicase, RNA (5'-R(P*UP*(5BU)P*UP*UP*UP*U)-3'), SULFATE ION, ... Authors: Appleby, T.C, Somoza, J.R. Deposit date: 2010-08-02 Release date: 2011-01-05 Last modified: 2023-09-06 Method: X-RAY DIFFRACTION (2 Å) Cite: Visualizing ATP-Dependent RNA Translocation by the NS3 Helicase from HCV. J.Mol.Biol., 405, 2011
3ZED	X-ray structure of the birnavirus VP1-VP3 complex Descriptor: CAPSID PROTEIN VP3, GLYCEROL, POTASSIUM ION, ... Authors: Bahar, M.W, Sarin, L.P, Graham, S.C, Pang, J, Bamford, D.H, Stuart, D.I, Grimes, J.M. Deposit date: 2012-12-04 Release date: 2013-01-16 Last modified: 2023-12-20 Method: X-RAY DIFFRACTION (2.2 Å) Cite: Structure of a Vp1-Vp3 Complex Suggests How Birnaviruses Package the Vp1 Polymerase. J.Virol., 87, 2013
4A36	Structure of duck RIG-I helicase domain bound to 19-mer dsRNA and ATP transition state analogue Descriptor: 5'-R(*GP*CP*AP*UP*GP*CP*GP*AP*CP*CP*UP*CP*UP*GP *UP*UP*UP*GP*A)-3', 5'-R(*UP*CP*AP*AP*AP*CP*AP*GP*AP*GP*GP*UP*CP*GP *CP*AP*UP*GP*C)-3', ADENOSINE-5'-DIPHOSPHATE, ... Authors: Kowalinski, E, Lunardi, T, McCarthy, A.A, Cusack, S. Deposit date: 2011-09-30 Release date: 2011-10-19 Last modified: 2023-12-20 Method: X-RAY DIFFRACTION (3.7 Å) Cite: Structural Basis for the Activation of Innate Immune Pattern Recognition Receptor Rig-I by Viral RNA. Cell(Cambridge,Mass.), 147, 2011
1P79	Crystal structure of a bulged RNA tetraplex: implications for a novel binding site in RNA tetraplex Descriptor: 5'-R(*UP*GP*UP*GP*GP*U)-3', POTASSIUM ION Authors: Pan, B, Xiong, Y, Shi, K, Sundaralingam, M. Deposit date: 2003-04-30 Release date: 2003-11-04 Last modified: 2024-02-14 Method: X-RAY DIFFRACTION (1.1 Å) Cite: Crystal Structure of a Bulged RNA Tetraplex at 1.1 A Resolution: Implications for a Novel Binding Site in RNA Tetraplex STRUCTURE, 11, 2003
2O5J	Crystal structure of the T. thermophilus RNAP polymerase elongation complex with the NTP substrate analog Descriptor: 5'-D(*AP*AP*CP*GP*CP*CP*AP*GP*AP*CP*AP*GP*GP*G)-3', 5'-D(P*CP*CP*CP*TP*GP*TP*CP*TP*GP*GP*CP*GP*TP*TP*CP*GP*CP*GP*CP*GP*CP*CP*G)-3', 5'-R(P*GP*AP*GP*UP*CP*UP*GP*CP*GP*GP*CP*GP*CP*GP*CP*G)-3', ... Authors: Vassylyev, D.G, Vassylyeva, M.N. Deposit date: 2006-12-06 Release date: 2007-07-03 Last modified: 2023-08-30 Method: X-RAY DIFFRACTION (3 Å) Cite: Structural basis for substrate loading in bacterial RNA polymerase. Nature, 448, 2007
2O5I	Crystal structure of the T. thermophilus RNA polymerase elongation complex Descriptor: 5'-D(*AP*AP*CP*GP*CP*CP*AP*GP*AP*CP*AP*GP*GP*G)-3', 5'-D(P*CP*CP*CP*TP*GP*TP*CP*TP*GP*GP*CP*GP*TP*TP*CP*GP*CP*GP*CP*GP*CP*CP*G)-3', 5'-R(P*GP*AP*GP*UP*CP*UP*GP*CP*GP*GP*CP*GP*CP*GP*CP*G)-3', ... Authors: Vassylyev, D.G, Tahirov, T.H, Vassylyeva, M.N. Deposit date: 2006-12-06 Release date: 2007-07-03 Last modified: 2023-08-30 Method: X-RAY DIFFRACTION (2.5 Å) Cite: Structural basis for transcription elongation by bacterial RNA polymerase. Nature, 448, 2007
4D25	Crystal structure of the Bombyx mori Vasa helicase (E339Q) in complex with RNA and AMPPNP Descriptor: 5'-R(*UP*GP*AP*CP*AP*UP)-3', BMVLG PROTEIN, GLYCEROL, ... Authors: Spinelli, P, Pillai, R.S, Kadlec, J, Cusack, S. Deposit date: 2014-05-07 Release date: 2014-06-18 Last modified: 2023-12-20 Method: X-RAY DIFFRACTION (1.9 Å) Cite: RNA Clamping by Vasa Assembles a Pirna Amplifier Complex on Transposon Transcripts. Cell(Cambridge,Mass.), 157, 2014
4D26	Crystal structure of the Bombyx mori Vasa helicase (E339Q) in complex with RNA,ADP and Pi Descriptor: 5'-R(*UP*GP*AP*CP*AP*UP)-3', ADENOSINE-5'-DIPHOSPHATE, BMVLG PROTEIN, ... Authors: Spinelli, P, Pillai, R.S, Kadlec, J, Cusack, S. Deposit date: 2014-05-07 Release date: 2014-06-18 Last modified: 2023-12-20 Method: X-RAY DIFFRACTION (2.1 Å) Cite: RNA Clamping by Vasa Assembles a Pirna Amplifier Complex on Transposon Transcripts. Cell(Cambridge,Mass.), 157, 2014
4BHH	Crystal structure of tetramer of La Crosse virus nucleoprotein in complex with ssRNA Descriptor: NUCLEOPROTEIN, POLY-URIDINE 45-MER Authors: Reguera, J, Malet, H, Weber, F, Cusack, S. Deposit date: 2013-04-03 Release date: 2013-04-24 Last modified: 2023-12-20 Method: X-RAY DIFFRACTION (3.4 Å) Cite: Structural Basis for Encapsidation of Genomic RNA by La Crosse Orthobunyavirus Nucleoprotein. Proc.Natl.Acad.Sci.USA, 110, 2013
4AL7	Crystal structure of the Csy4-minimal crRNA complex Descriptor: 5'-R(*CP*UP*GP*CP*CP*GP*UP*AP*UP*AP*GP*GP*CP*AP*G)-3', CSY4 ENDORIBONUCLEASE Authors: Haurwitz, R.E, Sternberg, S.H, Doudna, J.A. Deposit date: 2012-03-02 Release date: 2012-06-13 Last modified: 2023-12-20 Method: X-RAY DIFFRACTION (2.32 Å) Cite: Csy4 Relies on an Unusual Catalytic Dyad to Position and Cleave Crispr RNA. Embo J., 31, 2012
4J50	Crystal Structure of an Expanded RNA CAG Repeat Descriptor: PHOSPHATE ION, RNA (5'-R(*UP*UP*GP*GP*GP*CP*CP*AP*GP*CP*AP*GP*CP*AP*GP*GP*UP*CP*C)-3') Authors: Park, H, Disney, M.D. Deposit date: 2013-02-07 Release date: 2013-02-20 Last modified: 2024-02-28 Method: X-RAY DIFFRACTION (1.65 Å) Cite: A dynamic structural model of expanded RNA CAG repeats: a refined X-ray structure and computational investigations using molecular dynamics and umbrella sampling simulations. J.Am.Chem.Soc., 135, 2013
2V3C	Crystal structure of the SRP54-SRP19-7S.S SRP RNA complex of M. jannaschii Descriptor: 7S RNA, SIGNAL RECOGNITION 54 KDA PROTEIN, SIGNAL RECOGNITION PARTICLE 19 KDA PROTEIN Authors: Hainzl, T, Huang, S, Sauer-Eriksson, A.E. Deposit date: 2007-06-15 Release date: 2007-09-04 Last modified: 2023-12-13 Method: X-RAY DIFFRACTION (2.5 Å) Cite: Interaction of Signal-Recognition Particle 54 Gtpase Domain and Signal-Recognition Particle RNA in the Free Signal-Recognition Particle. Proc.Natl.Acad.Sci.USA, 104, 2007
2QH2	Solution structure of the CR7 terminal hairpin loop from human telomerase RNA Descriptor: Human telomerase RNA CR7 terminal hairpin loop Authors: Feigon, J, Theimer, C.A, Chim, N, Breece, K.E. Deposit date: 2007-06-29 Release date: 2007-09-25 Last modified: 2024-05-01 Method: SOLUTION NMR Cite: Structural and functional characterization of human telomerase RNA processing and cajal body localization signals. Mol.Cell, 27, 2007
1PBR	STRUCTURE OF 16S RIBOSOMAL RNA, NMR, MINIMIZED AVERAGE STRUCTURE Descriptor: 16S RIBOSOMAL RNA, 2,6-diamino-2,6-dideoxy-beta-L-idopyranose-(1-3)-beta-D-ribofuranose, 2-DEOXYSTREPTAMINE, ... Authors: Fourmy, D, Recht, M.I, Blanchard, S, Puglisi, J.D. Deposit date: 1996-09-12 Release date: 1997-09-17 Last modified: 2024-05-01 Method: SOLUTION NMR Cite: Structure of the A site of Escherichia coli 16S ribosomal RNA complexed with an aminoglycoside antibiotic. Science, 274, 1996
1LNG	Crystal Structure of the SRP19-7S.S SRP RNA Complex of M. jannaschii Descriptor: 7S.S SRP RNA, MAGNESIUM ION, Signal recognition particle 19 kDa protein Authors: Hainzl, T, Huang, S, Sauer-Eriksson, A.E. Deposit date: 2002-05-03 Release date: 2002-06-07 Last modified: 2023-08-16 Method: X-RAY DIFFRACTION (2.3 Å) Cite: Structure of the SRP19 RNA complex and implications for signal recognition particle assembly. Nature, 417, 2002
1K9W	HIV-1(MAL) RNA Dimerization Initiation Site Descriptor: HIV-1 DIS(Mal)UU RNA, MAGNESIUM ION Authors: Ennifar, E, Walter, P, Ehresmann, B, Ehresmann, C, Dumas, P. Deposit date: 2001-10-31 Release date: 2001-11-30 Last modified: 2024-02-07 Method: X-RAY DIFFRACTION (3.1 Å) Cite: Crystal structures of coaxially stacked kissing complexes of the HIV-1 RNA dimerization initiation site. Nat.Struct.Biol., 8, 2001
2WYL	Apo structure of a metallo-b-lactamase Descriptor: FORMYL GROUP, GLYCEROL, L-ASCORBATE-6-PHOSPHATE LACTONASE ULAG Authors: Garces, F, Fernandez, F.J, Penya-Soler, E, Aguilar, J, Baldoma, L, Coll, M, Badia, J, Vega, M.C. Deposit date: 2009-11-16 Release date: 2010-04-14 Last modified: 2011-07-13 Method: X-RAY DIFFRACTION (2.59 Å) Cite: Molecular Architecture of the Mn(2+)Dependent Lactonase Ulag Reveals an Rnase-Like Metallo-Beta-Lactamase Fold and a Novel Quaternary Structure. J.Mol.Biol., 398, 2010
2WYM	Structure of a metallo-b-lactamase Descriptor: CITRATE ANION, GLYCEROL, L-ASCORBATE-6-PHOSPHATE LACTONASE ULAG, ... Authors: Garces, F, Fernandez, F.J, Penya-Soler, E, Aguilar, J, Baldoma, L, Coll, M, Badia, J, Vega, M.C. Deposit date: 2009-11-16 Release date: 2010-04-14 Last modified: 2023-12-20 Method: X-RAY DIFFRACTION (2.6 Å) Cite: Molecular Architecture of the Mn(2+)Dependent Lactonase Ulag Reveals an Rnase-Like Metallo-Beta-Lactamase Fold and a Novel Quaternary Structure. J.Mol.Biol., 398, 2010
2PI5	T7 RNA polymerase complexed with a phi10 promoter Descriptor: 5'-D(*CP*TP*TP*C*CP*TP*AP*TP*AP*GP*TP*GP*AP*GP*TP*CP*GP*TP*AP*TP*TP*A)-3', 5'-D(*TP*AP*AP*TP*AP*CP*GP*AP*CP*TP*CP*AP*CP*T)-3', DNA-directed RNA polymerase Authors: Kennedy, W.P, Momand, J.R, Yin, Y.W. Deposit date: 2007-04-12 Release date: 2007-06-19 Last modified: 2024-02-21 Method: X-RAY DIFFRACTION (2.9 Å) Cite: Mechanism for de novo RNA synthesis and initiating nucleotide specificity by t7 RNA polymerase. J.Mol.Biol., 370, 2007
1ZC5	Structure of the RNA signal essential for translational frameshifting in HIV-1 Descriptor: HIV-1 frameshift RNA signal Authors: Gaudin, C, Mazauric, M.H, Traikia, M, Guittet, E, Yoshizawa, S, Fourmy, D. Deposit date: 2005-04-11 Release date: 2005-06-07 Last modified: 2024-05-29 Method: SOLUTION NMR Cite: Structure of the RNA Signal Essential for Translational Frameshifting in HIV-1 J.Mol.Biol., 349, 2005
7KGA	Crystal structure of a mosquito-borne flavivirus dumbbell RNA Descriptor: IRIDIUM HEXAMMINE ION, RNA (90-MER) Authors: Akiyama, B.M, Graham, M.E, O'Donoghue, Z, Beckham, J.D, Kieft, J.S. Deposit date: 2020-10-16 Release date: 2021-06-23 Last modified: 2024-03-06 Method: X-RAY DIFFRACTION (2.1 Å) Cite: Three-dimensional structure of a flavivirus dumbbell RNA reveals molecular details of an RNA regulator of replication. Nucleic Acids Res., 49, 2021
8UTG	An RNA G-Quadruplex from the NS5 gene in the West Nile Virus Genome Descriptor: AMMONIUM ION, POTASSIUM ION, RNA (5'-R(*UP*AP*UP*GP*GP*AP*AP*GP*AP*GP*GP*CP*GP*GP*UP*UP*GP*GP*UP*AP*U)-3') Authors: Terrell, J.R, Le, T.T, Wilson, W.D, Siemer, J.L. Deposit date: 2023-10-31 Release date: 2024-06-19 Last modified: 2024-07-17 Method: X-RAY DIFFRACTION (1.97 Å) Cite: Structure of an RNA G-quadruplex from the West Nile virus genome. Nat Commun, 15, 2024
2PCV	Solution Structure of an rRNA Substrate Bound to the Pseudouridylation Pocket of a Box H/ACA snoRNA Descriptor: U65 Box H/ACA snoRNA Authors: Jin, H, Loria, J.P, Moore, P.B. Deposit date: 2007-03-30 Release date: 2007-05-08 Last modified: 2024-05-22 Method: SOLUTION NMR Cite: Solution structure of an rRNA substrate bound to the pseudouridylation pocket of a box H/ACA snoRNA. Mol.Cell, 26, 2007
7ZEX	Complex Cyp33-RRMdelta alpha : UAAUGUCG RNA Descriptor: Isoform 3 of Peptidyl-prolyl cis-trans isomerase E, RNA (5'-R(*UP*AP*AP*UP*GP*UP*CP*G)-3') Authors: Blatter, M, Allain, F, Meylan, C. Deposit date: 2022-03-31 Release date: 2022-05-04 Last modified: 2024-06-19 Method: SOLUTION NMR Cite: RNA binding induces an allosteric switch in Cyp33 to repress MLL1-mediated transcription. Sci Adv, 9, 2023
2PO4	X-ray crystal structure of polymerase domain of the bacteriophage N4 virion RNA polymerase Descriptor: Virion RNA polymerase Authors: Murakami, K.S, Davydova, E.K, Rothman-Denes, L.B. Deposit date: 2007-04-25 Release date: 2008-04-01 Last modified: 2024-02-21 Method: X-RAY DIFFRACTION (2 Å) Cite: X-ray crystal structure of polymerase domain of the bacteriophage N4 virion RNA polymerase Proc.Natl.Acad.Sci.USA, 15, 2008

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