Loading
PDBj
MenuPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDBDonate
RCSB PDBPDBeBMRBAdv. SearchSearch help

5MWT
DownloadVisualize
BU of 5mwt by Molmil
Galectin-1 in Complex with Ligand JB97
Descriptor: BETA-MERCAPTOETHANOL, Galectin-1, SULFATE ION, ...
Authors:Grimm, C, Bechold, J.
Deposit date:2017-01-19
Release date:2018-02-14
Last modified:2025-04-09
Method:X-RAY DIFFRACTION (1.711 Å)
Cite:Structural insights into the redesign of a sucrose phosphorylase by induced loop repositioning
To Be Published
5KBR
DownloadVisualize
BU of 5kbr by Molmil
Pak1 in complex with 7-azaindole inhibitor
Descriptor: (4-chlorophenyl)-[5-(1-piperidin-4-ylpyrazol-4-yl)-1~{H}-pyrrolo[2,3-b]pyridin-3-yl]methanone, Serine/threonine-protein kinase PAK 1
Authors:Ferguson, A.
Deposit date:2016-06-03
Release date:2016-09-28
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (2.36 Å)
Cite:Optimization of Highly Kinase Selective Bis-anilino Pyrimidine PAK1 Inhibitors.
ACS Med Chem Lett, 7, 2016
1MZI
DownloadVisualize
BU of 1mzi by Molmil
Solution ensemble structures of HIV-1 gp41 2F5 mAb epitope
Descriptor: 2F5 epitope of HIV-1 gp41 fusion protein
Authors:Barbato, G, Bianchi, E, Ingallinella, P, Hurni, W.H, Miller, M.D, Ciliberto, G, Cortese, R, Bazzo, R, Shiver, J.W, Pessi, A.
Deposit date:2002-10-08
Release date:2003-09-02
Last modified:2024-05-29
Method:SOLUTION NMR
Cite:Structural analysis of the epitope of the anti-HIV antibody 2F5 sheds light into its mechanism of neutralization and HIV fusion.
J.Mol.Biol., 330, 2003
8E9E
DownloadVisualize
BU of 8e9e by Molmil
Rat protein farnesyltransferase in complex with FPP and inhibitor 2f
Descriptor: (5S)-4-({1-[(4-bromophenyl)methyl]-1H-imidazol-5-yl}methyl)-5-butyl-1-[3-(trifluoromethoxy)phenyl]piperazin-2-one, 1,2-ETHANEDIOL, 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, ...
Authors:Wang, Y, Shi, Y, Beese, L.S.
Deposit date:2022-08-26
Release date:2022-10-26
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.844 Å)
Cite:Structure-Guided Discovery of Potent Antifungals that Prevent Ras Signaling by Inhibiting Protein Farnesyltransferase.
J.Med.Chem., 65, 2022
9JKV
DownloadVisualize
BU of 9jkv by Molmil
IBC-HCAR3-Gi complex
Descriptor: 1-propan-2-ylbenzotriazole-5-carboxylic acid, Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2, Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1, ...
Authors:Binghao, Z, Fang, Y.
Deposit date:2024-09-17
Release date:2025-10-29
Method:ELECTRON MICROSCOPY (3.26 Å)
Cite:IBC-HCAR3 complex
To Be Published
4R37
DownloadVisualize
BU of 4r37 by Molmil
Crystal structure analysis of LpxA, a UDP-N-acetylglucosamine acyltransferase from Bacteroides fragilis 9343 with UDP-GlcNAc
Descriptor: 2-(2-METHOXYETHOXY)ETHANOL, 3,6,9,12,15,18,21,24-OCTAOXAHEXACOSAN-1-OL, ACETATE ION, ...
Authors:Fisher, A.J, Chen, X, Ngo, A.
Deposit date:2014-08-14
Release date:2015-05-06
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structures of Bacteroides fragilis uridine 5'-diphosphate-N-acetylglucosamine (UDP-GlcNAc) acyltransferase (BfLpxA).
Acta Crystallogr.,Sect.D, 71, 2015
9G8V
DownloadVisualize
BU of 9g8v by Molmil
StmPr1, Stenotrophomonas maltophilia Protease 1, 36 kDa alkine serine protease
Descriptor: Alkaline serine protease, CALCIUM ION, GLYCEROL, ...
Authors:Sommer, M, Outzen, L, Negm, A, WIndhorst, S, Weber, W, Betzel, C.
Deposit date:2024-07-24
Release date:2025-08-06
Method:X-RAY DIFFRACTION (1.637 Å)
Cite:Unveiling the structure, function and dynamics of StmPr1 in Stenotrophomonas maltophilia virulence.
Sci Rep, 15, 2025
7PS2
DownloadVisualize
BU of 7ps2 by Molmil
Crystal structure of the receptor binding domain of SARS-CoV-2 beta variant spike glycoprotein in complex with Beta-29 and Beta-53 Fabs
Descriptor: Beta-29 Fab heavy chain, Beta-29 Fab light chain, Beta-53 Fab light chain, ...
Authors:Zhou, D, Ren, J, Stuart, D.I.
Deposit date:2021-09-22
Release date:2021-12-15
Last modified:2024-10-23
Method:X-RAY DIFFRACTION (2.99 Å)
Cite:The antibody response to SARS-CoV-2 Beta underscores the antigenic distance to other variants.
Cell Host Microbe, 30, 2022
6QAJ
DownloadVisualize
BU of 6qaj by Molmil
Structure of the tripartite motif of KAP1/TRIM28
Descriptor: Endolysin,Transcription intermediary factor 1-beta, ZINC ION
Authors:Stoll, G.A, Oda, S, Yu, M, Modis, Y.
Deposit date:2018-12-19
Release date:2019-07-24
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (2.901 Å)
Cite:Structure of KAP1 tripartite motif identifies molecular interfaces required for retroelement silencing.
Proc.Natl.Acad.Sci.USA, 116, 2019
7LVN
DownloadVisualize
BU of 7lvn by Molmil
Solution structure of tarantula toxin omega-Avsp1a
Descriptor: Omega-Avsp1a
Authors:Chin, Y.K.Y, Herzig, V, King, G.F.
Deposit date:2021-02-26
Release date:2022-03-02
Last modified:2024-11-20
Method:SOLUTION NMR
Cite:The Tarantula Toxin omega-Avsp1a Specifically Inhibits Human Ca V 3.1 and Ca V 3.3 via the Extracellular S3-S4 Loop of the Domain 1 Voltage-Sensor.
Biomedicines, 10, 2022
6EO9
DownloadVisualize
BU of 6eo9 by Molmil
Crystal structure of thrombin in complex with a novel glucose-conjugated potent inhibitor
Descriptor: DIMETHYL SULFOXIDE, Hirudin variant-2, N-(2-{[5-(5-chlorothiophen-2-yl)-1,2-oxazol-3-yl]methoxy}-6-{3-[(2,3,4,6-tetra-O-acetyl-beta-D-glucopyranosyl)oxy]propoxy}phenyl)-1-(propan-2-yl)piperidine-4-carboxamide, ...
Authors:Belviso, B.D, Caliandro, R, Aresta, B.M, De Candia, M, Altomare, C.D.
Deposit date:2017-10-09
Release date:2017-12-13
Last modified:2024-11-20
Method:X-RAY DIFFRACTION (1.84 Å)
Cite:How a beta-D-glucoside side chain enhances binding affinity to thrombin of inhibitors bearing 2-chlorothiophene as P1 moiety: crystallography, fragment deconstruction study, and evaluation of antithrombotic properties.
J. Med. Chem., 57, 2014
5WMB
DownloadVisualize
BU of 5wmb by Molmil
Structure of the 10S (-)-cis-BP-dG modified Rev1 ternary complex (the BP residue is disordered)
Descriptor: 1,2-ETHANEDIOL, 2'-DEOXYCYTIDINE-5'-TRIPHOSPHATE, DI(HYDROXYETHYL)ETHER, ...
Authors:Rechkoblit, O, Kolbanovsky, A, Landes, H, Geacintov, N.E, Aggarwal, A.K.
Deposit date:2017-07-28
Release date:2017-10-25
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (2.25 Å)
Cite:Mechanism of error-free replication across benzo[a]pyrene stereoisomers by Rev1 DNA polymerase.
Nat Commun, 8, 2017
5KF8
DownloadVisualize
BU of 5kf8 by Molmil
X-ray structure of a glucosamine N-Acetyltransferase from Clostridium acetobutylicum in complex with glucosamine
Descriptor: 1,2-ETHANEDIOL, 2-amino-2-deoxy-beta-D-glucopyranose, 3-[4-(2-HYDROXYETHYL)PIPERAZIN-1-YL]PROPANE-1-SULFONIC ACID, ...
Authors:Holden, H.M, Thoden, J.B, Dopkins, B.J, Tipton, P.A.
Deposit date:2016-06-12
Release date:2016-07-06
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structural Studies on a Glucosamine/Glucosaminide N-Acetyltransferase.
Biochemistry, 55, 2016
7LXK
DownloadVisualize
BU of 7lxk by Molmil
Ara h 1 leader sequence, Ara h 1.0101 (25-83) A25G
Descriptor: Allergen Ara h 1, clone P41B
Authors:Mueller, G, London, R.
Deposit date:2021-03-03
Release date:2022-03-09
Last modified:2024-10-23
Method:SOLUTION NMR
Cite:Structure, Immunogenicity, and IgE Cross-Reactivity among Walnut and Peanut Vicilin-Buried Peptides.
J.Agric.Food Chem., 70, 2022
9D6L
DownloadVisualize
BU of 9d6l by Molmil
Human Sec61 complex inhibited by KZR-261
Descriptor: 4-{(3S)-9-(cyclohexylmethyl)-5-[(3R,5R)-4-(3-fluoro-5-methoxyphenyl)-3,5-dimethylpiperazine-1-sulfonyl]-3-methyl-1,5,9-triazacyclododecane-1-sulfonyl}-N,N-dimethylaniline, Protein transport protein Sec61 subunit alpha isoform 1, Protein transport protein Sec61 subunit beta, ...
Authors:Park, E, Wang, L.
Deposit date:2024-08-15
Release date:2025-07-23
Last modified:2025-07-30
Method:ELECTRON MICROSCOPY (3.1 Å)
Cite:Preclinical characterization of novel multi-client inhibitors of Sec61 with broad antitumor activity.
J.Pharmacol.Exp.Ther., 392, 2025
6AKH
DownloadVisualize
BU of 6akh by Molmil
Pre-catalytic Ternary Complex of Human DNA Polymerase Mu with Templating Adenine and Incoming Mn-dUMPNPP
Descriptor: 1,2-ETHANEDIOL, 2'-DEOXYURIDINE 5'-ALPHA,BETA-IMIDO-TRIPHOSPHATE, 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, ...
Authors:Chang, Y.K, Wu, W.J, Tsai, M.D.
Deposit date:2018-08-31
Release date:2019-05-29
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Human DNA Polymerase mu Can Use a Noncanonical Mechanism for Multiple Mn2+-Mediated Functions.
J.Am.Chem.Soc., 141, 2019
4QQ1
DownloadVisualize
BU of 4qq1 by Molmil
Crystal structure of the isotype 1 Transferrin binding protein B (TbpB) from serogroup B Neisseria meningitidis
Descriptor: CESIUM ION, GLYCEROL, SULFATE ION, ...
Authors:Calmettes, C, Moraes, T.F.
Deposit date:2014-06-26
Release date:2015-04-01
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (3.33 Å)
Cite:Patterns of structural and sequence variation within isotype lineages of the Neisseria meningitidis transferrin receptor system.
Microbiologyopen, 4, 2015
6Q5N
DownloadVisualize
BU of 6q5n by Molmil
Crystal structure of a CC-Hex mutant that forms a parallel six-helix coiled coil CC-Hex*-L24Nle
Descriptor: 1,4-DIETHYLENE DIOXIDE, CC-Hex*-L24Nle, GLYCEROL
Authors:Wood, C.W, Beesley, J.L, Rhys, G.G, Brady, R.L, Woolfson, D.N.
Deposit date:2018-12-09
Release date:2019-05-22
Last modified:2024-11-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Navigating the Structural Landscape of De Novo alpha-Helical Bundles.
J.Am.Chem.Soc., 141, 2019
7Q0I
DownloadVisualize
BU of 7q0i by Molmil
Crystal structure of the N-terminal domain of SARS-CoV-2 beta variant spike glycoprotein in complex with Beta-43
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose, ...
Authors:Zhou, D, Ren, J, Stuart, D.I.
Deposit date:2021-10-14
Release date:2021-12-22
Last modified:2024-11-13
Method:X-RAY DIFFRACTION (2.39 Å)
Cite:The antibody response to SARS-CoV-2 Beta underscores the antigenic distance to other variants.
Cell Host Microbe, 30, 2022
7Q0G
DownloadVisualize
BU of 7q0g by Molmil
Crystal structure of the receptor binding domain of SARS-CoV-2 beta variant spike glycoprotein in complex with Beta-49 and FI-3A Fabs
Descriptor: Beta-49 Fab heavy chain, Beta-49 Fab light chain, CHLORIDE ION, ...
Authors:Zhou, D, Ren, J, Stuart, D.I.
Deposit date:2021-10-14
Release date:2021-12-22
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (1.82 Å)
Cite:The antibody response to SARS-CoV-2 Beta underscores the antigenic distance to other variants.
Cell Host Microbe, 30, 2022
4YU0
DownloadVisualize
BU of 4yu0 by Molmil
Crystal structure of a tetramer of GluA2 TR mutant ligand binding domains bound with glutamate at 1.26 Angstrom resolution
Descriptor: DI(HYDROXYETHYL)ETHER, GLUTAMIC ACID, Glutamate receptor 2,Glutamate receptor 2, ...
Authors:Chebli, M, Salazar, H, Baranovic, J, Carbone, A.L, Ghisi, V, Faelber, K, Lau, A.Y, Daumke, O, Plested, A.J.R.
Deposit date:2015-03-18
Release date:2016-01-13
Last modified:2024-11-13
Method:X-RAY DIFFRACTION (1.26 Å)
Cite:Crystal structure of the tetrameric GluA2 ligand-binding domain in complex with glutamate at 1.26 Angstroms resolution
To Be Published
7LAW
DownloadVisualize
BU of 7law by Molmil
crystal structure of GITR complex with GITR-L
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Tumor necrosis factor ligand superfamily member 18, Tumor necrosis factor receptor superfamily member 18
Authors:Longenecker, K.L, Rogers, B, Bigelow, L, Judge, R.A, Alvarez, H.
Deposit date:2021-01-07
Release date:2022-03-09
Last modified:2024-10-23
Method:X-RAY DIFFRACTION (2.752 Å)
Cite:An anti-PD-1-GITR-L bispecific agonist induces GITR clustering-mediated T cell activation for cancer immunotherapy.
Nat Cancer, 3, 2022
9K8X
DownloadVisualize
BU of 9k8x by Molmil
Crystal structure of the calcium indicator GCaMP6s-BrUS-145 in calcium-bounded state
Descriptor: 1,2-ETHANEDIOL, CALCIUM ION, Calcium indicator GCaMP6s-BrUS-145,Calmodulin-1, ...
Authors:Varfolomeeva, L.A, Simonyan, T.R, Mamontova, A.V, Popov, V.O, Bogdanov, A.M, Boyko, K.M.
Deposit date:2024-10-24
Release date:2024-12-11
Last modified:2025-01-01
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:Calcium Indicators with Fluorescence Lifetime-Based Signal Readout: A Structure-Function Study.
Int J Mol Sci, 25, 2024
9GF5
DownloadVisualize
BU of 9gf5 by Molmil
CRYSTAL STRUCTURE OF COMPLEX OF ASO BINDING FAB FRAGMENT IN COMPLEX WITH ASO980
Descriptor: 1,2-ETHANEDIOL, 1-[(2R,4S,5R)-4-[[(1R,3R,4R,7S)-7-[[(2R,3S,5R)-5-(6-aminopurin-9-yl)-3-[[(2R,3S,5R)-5-(4-azanyl-2-oxidanylidene-pyrimidin-1-yl)-3-oxidanyl-oxolan-2-yl]methoxy-sulfanyl-phosphoryl]oxy-oxolan-2-yl]methoxy-sulfanyl-phosphoryl]oxy-3-(4-azanyl-5-methyl-2-oxidanylidene-pyrimidin-1-yl)-2,5-dioxabicyclo[2.2.1]heptan-1-yl]methoxy-sulfanyl-phosphoryl]oxy-5-(hydroxymethyl)oxolan-2-yl]-5-methyl-pyrimidine-2,4-dione, 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, ...
Authors:Hung-En, H, Zanini, C, Simonneau, C, Fraidling, J, Kraft, T, Mayer, K, Sommer, A, Indlekofer, A, Wirth, T, Benz, J, Georges, G, Langer, M, Gassner, C, Larraillet, V, Manso, M, Ravn, J, Hofer, K, Emrich, T, Niewoehner, J, Schumacher, F, Brinkmann, U.
Deposit date:2024-08-08
Release date:2025-08-20
Last modified:2025-11-12
Method:X-RAY DIFFRACTION (1.57 Å)
Cite:Improved targeted delivery of antisense oligonucleotide with an antibody mask.
Nucleic Acids Res., 53, 2025
8DW5
DownloadVisualize
BU of 8dw5 by Molmil
Complex of Human Transthyretin with 3',5'-Dichlorophenylanthranilic Acid
Descriptor: 2-[(3,5-dichlorophenyl)amino]benzoic acid, Transthyretin
Authors:Truong, J.Q, Holdsworth, B, Holien, J.K.
Deposit date:2022-07-31
Release date:2022-08-10
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.52 Å)
Cite:Structural Analysis of the Complex of Human Transthyretin with 3',5'-Dichlorophenylanthranilic Acid at 1.5 angstrom Resolution.
Molecules, 27, 2022

244693

數據於2025-11-12公開中

PDB statisticsPDBj update infoContact PDBjnumon