PDB: 9760 resultsInfo pagesStatus searchChemie searchBIRD

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3BIK	Crystal Structure of the PD-1/PD-L1 Complex Descriptor: GLYCEROL, Programmed cell death 1 ligand 1, Programmed cell death protein 1 Authors: Lin, D.Y, Tanaka, Y, Iwasaki, M, Gittis, A.G, Su, H.P, Mikami, B, Okazaki, T, Honjo, T, Minato, N, Garboczi, D.N. Deposit date: 2007-11-30 Release date: 2008-02-26 Last modified: 2023-08-30 Method: X-RAY DIFFRACTION (2.65 Å) Cite: The PD-1/PD-L1 complex resembles the antigen-binding Fv domains of antibodies and T cell receptors. Proc.Natl.Acad.Sci.Usa, 105, 2008
6QNA	Structure of bovine anti-RSV hybrid Fab B13HC-B4LC Descriptor: B13 Heavy chain, B4 light chain, GLYCEROL Authors: Ren, J, Nettleship, J.E, Harris, G, Mwangi, W, Rhaman, N, Grant, C, Kotecha, A, Fry, E, Charleston, B, Stuart, D.I, Hammond, J, Owens, R.J. Deposit date: 2019-02-10 Release date: 2019-05-29 Last modified: 2024-01-24 Method: X-RAY DIFFRACTION (2.62 Å) Cite: The role of the light chain in the structure and binding activity of two cattle antibodies that neutralize bovine respiratory syncytial virus. Mol.Immunol., 112, 2019
6QN9	Structure of bovine anti-RSV Fab B4 Descriptor: GLYCEROL, Heavy chain, SULFATE ION, ... Authors: Ren, J, Nettleship, J.E, Harris, G, Mwangi, W, Rhaman, N, Grant, C, Kotecha, A, Fry, E, Charleston, B, Stuart, D.I, Hammond, J, Owens, R.J. Deposit date: 2019-02-10 Release date: 2019-05-29 Last modified: 2024-01-24 Method: X-RAY DIFFRACTION (1.89 Å) Cite: The role of the light chain in the structure and binding activity of two cattle antibodies that neutralize bovine respiratory syncytial virus. Mol.Immunol., 112, 2019
6QN8	Structure of bovine anti-RSV Fab B13 Descriptor: CHLORIDE ION, Heavy chain of bovine anti-RSV B13 Fab, Light chain of bovine anti-RSV Fab B13 Authors: Ren, J, Nettleship, J.E, Harris, G, Mwangi, W, Rhaman, N, Grant, C, Kotecha, A, Fry, E, Charleston, B, Stuart, D.I, Hammond, J, Owens, R.J. Deposit date: 2019-02-10 Release date: 2019-05-29 Last modified: 2019-08-21 Method: X-RAY DIFFRACTION (2.12 Å) Cite: The role of the light chain in the structure and binding activity of two cattle antibodies that neutralize bovine respiratory syncytial virus. Mol.Immunol., 112, 2019
1VES	Structure of New Antigen Receptor variable domain from sharks Descriptor: New Antigen Receptor variable domain Authors: Streltsov, V.A. Deposit date: 2004-04-05 Release date: 2004-08-24 Last modified: 2023-10-25 Method: X-RAY DIFFRACTION (2.18 Å) Cite: Structural evidence for evolution of shark Ig new antigen receptor variable domain antibodies from a cell-surface receptor Proc.Natl.Acad.Sci.USA, 101, 2004
6QN7	Structure of bovine anti-RSV hybrid Fab B4HC-B13LC Descriptor: Heavy chain of bovine anti-RSV B4, Light chain of bovine anti-RSV B13 Authors: Ren, J, Nettleship, J.E, Harris, G, Mwangi, W, Rhaman, N, Grant, C, Kotecha, A, Fry, E, Charleston, B, Stuart, D.I, Hammond, J, Owens, R.J. Deposit date: 2019-02-10 Release date: 2019-05-29 Last modified: 2019-08-21 Method: X-RAY DIFFRACTION (2.15 Å) Cite: The role of the light chain in the structure and binding activity of two cattle antibodies that neutralize bovine respiratory syncytial virus. Mol.Immunol., 112, 2019
1VER	Structure of New Antigen Receptor variable domain from sharks Descriptor: New Antigen Receptor variable domain Authors: Streltsov, V.A. Deposit date: 2004-04-05 Release date: 2004-08-24 Last modified: 2023-12-27 Method: X-RAY DIFFRACTION (2.82 Å) Cite: Structural evidence for evolution of shark Ig new antigen receptor variable domain antibodies from a cell-surface receptor Proc.Natl.Acad.Sci.USA, 101, 2004
4MUC	The 4th and 5th C-terminal domains of Factor H related protein 1 Descriptor: Complement factor H-related protein 1, SULFATE ION Authors: Bhattacharjee, A, Goldman, A, Kolodziejczyk, R, Jokiranta, T.S. Deposit date: 2013-09-21 Release date: 2015-02-18 Last modified: 2015-05-06 Method: X-RAY DIFFRACTION (2.897 Å) Cite: The Major Autoantibody Epitope on Factor H in Atypical Hemolytic Uremic Syndrome Is Structurally Different from Its Homologous Site in Factor H-related Protein 1, Supporting a Novel Model for Induction of Autoimmunity in This Disease. J.Biol.Chem., 290, 2015
8JKD	Cryo-EM structure of CCHFV envelope protein Gc trimer in complex with Gc13 Fab Descriptor: Glycoprotein C Authors: Chong, T, Cao, S. Deposit date: 2023-06-01 Release date: 2024-01-24 Last modified: 2024-02-28 Method: ELECTRON MICROSCOPY (2.6 Å) Cite: Neutralizing monoclonal antibodies against the Gc fusion loop region of Crimean-Congo hemorrhagic fever virus. Plos Pathog., 20, 2024
2KPY	Solution Structure of the major allergen of Artemisia vulgaris (Art v 1) Descriptor: Major pollen allergen Art v 1 Authors: Razzera, G, Gadermaier, G, Almeida, M, Egger, M, Jahn-Schmid, B, Almeida, F, Ferreira, F, Valente, A. Deposit date: 2009-10-23 Release date: 2010-10-06 Last modified: 2023-06-14 Method: SOLUTION NMR Cite: Mapping the interactions between a major pollen allergen and human IgE antibodies. Structure, 18, 2010
5M15	Synthetic nanobody in complex with MBP Descriptor: Maltose-binding periplasmic protein, Synthetic nanobody L2_D09, (a-MBP#3) Authors: Zimmermann, I, Egloff, P, Seeger, M.A. Deposit date: 2016-10-07 Release date: 2017-11-15 Last modified: 2019-10-16 Method: X-RAY DIFFRACTION (1.9 Å) Cite: Synthetic single domain antibodies for the conformational trapping of membrane proteins. Elife, 7, 2018
5M13	Synthetic nanobody in complex with MBP Descriptor: 1,2-ETHANEDIOL, Maltose-binding periplasmic protein, synthetic Nanobody L2_C06 (a-MBP#2) Authors: Zimmermann, I, Egloff, P, Seeger, M.A. Deposit date: 2016-10-07 Release date: 2017-11-15 Last modified: 2019-10-16 Method: X-RAY DIFFRACTION (1.372 Å) Cite: Synthetic single domain antibodies for the conformational trapping of membrane proteins. Elife, 7, 2018
5M14	Synthetic nanobody in complex with MBP Descriptor: Maltose-binding periplasmic protein, synthetic Nanobody L2_G11 (a-MBP#2) Authors: Zimmermann, I, Egloff, P, Seeger, M.A. Deposit date: 2016-10-07 Release date: 2017-11-15 Last modified: 2019-10-16 Method: X-RAY DIFFRACTION (1.6 Å) Cite: Synthetic single domain antibodies for the conformational trapping of membrane proteins. Elife, 7, 2018
3P30	crystal structure of the cluster II Fab 1281 in complex with HIV-1 gp41 ectodomain Descriptor: 1281 Fab heavy chain, 1281 Fab light chain, HIV-1 gp41 Authors: Frey, G, Chen, J, Rits-Volloch, S, Freeman, M.M, Zolla-Pazner, S, Chen, B. Deposit date: 2010-10-04 Release date: 2010-11-17 Last modified: 2017-11-08 Method: X-RAY DIFFRACTION (3.3 Å) Cite: Distinct conformational states of HIV-1 gp41 are recognized by neutralizing and non-neutralizing antibodies. Nat.Struct.Mol.Biol., 17, 2010
1WRF	Refined solution structure of Der f 2, The Major Mite Allergen from Dermatophagoides farinae Descriptor: Mite group 2 allergen Der f 2 Authors: Ichikawa, S, Takai, T, Inoue, T, Yuuki, T, Okumura, Y, Ogura, K, Inagaki, F, Hatanaka, H. Deposit date: 2004-10-15 Release date: 2005-04-19 Last modified: 2022-03-02 Method: SOLUTION NMR Cite: NMR Study on the Major Mite Allergen Der f 2: Its Refined Tertiary Structure, Epitopes for Monoclonal Antibodies and Characteristics Shared by ML Protein Group Members J.Biochem.(Tokyo), 137, 2005
5VAA	Crystal structure of mouse IgG2a Fc T370K mutant Descriptor: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, GLYCEROL, Ig gamma-2A chain C region, ... Authors: Armstrong, A.A, Gilliland, G.L. Deposit date: 2017-03-24 Release date: 2017-06-07 Last modified: 2020-07-29 Method: X-RAY DIFFRACTION (1.55 Å) Cite: Efficient Generation of Bispecific Murine Antibodies for Pre-Clinical Investigations in Syngeneic Rodent Models. Sci Rep, 7, 2017
5YWO	Structure of JEV-2F2 Fab complex Descriptor: 2F2 heavy chain, 2F2 light chain, JEV E protein, ... Authors: Qiu, X, Lei, Y.F, Yang, P, Gao, Q, Wang, N, Cao, L, Yuan, S, Wang, X, Xu, Z.K, Rao, Z. Deposit date: 2017-11-29 Release date: 2018-03-21 Last modified: 2018-09-12 Method: ELECTRON MICROSCOPY (4.7 Å) Cite: Structural basis for neutralization of Japanese encephalitis virus by two potent therapeutic antibodies Nat Microbiol, 3, 2018
3B9K	Crystal structure of CD8alpha-beta in complex with YTS 156.7 FAB Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Fab Heavy chain, Fab Light Chain, ... Authors: Shore, D, Wilson, I.A. Deposit date: 2007-11-05 Release date: 2008-11-11 Last modified: 2020-07-29 Method: X-RAY DIFFRACTION (2.7 Å) Cite: The Crystal Structure of CD8 in Complex with YTS156.7.7 Fab and Interaction with Other CD8 Antibodies Define the Binding Mode of CD8 alphabeta to MHC Class I J.Mol.Biol., 384, 2008
5YWF	Crystal structure of 2H4 Fab Descriptor: 2H4 heavy chain, 2H4 light chain Authors: Qiu, X, Lei, Y, Yang, P, Gao, Q, Wang, N, Cao, L, Wang, X, Xu, Z.K, Rao, Z. Deposit date: 2017-11-29 Release date: 2018-03-21 Method: X-RAY DIFFRACTION (2.206 Å) Cite: Structural basis for neutralization of Japanese encephalitis virus by two potent therapeutic antibodies Nat Microbiol, 3, 2018
3ZV2	Human protein-tyrosine phosphatase 1b C215A, S216A mutant Descriptor: Tyrosine-protein phosphatase non-receptor type 1 Authors: Barford, D, Salmeen, A, Tonks, N.K. Deposit date: 2011-07-22 Release date: 2011-08-31 Last modified: 2023-12-20 Method: X-RAY DIFFRACTION (2.8 Å) Cite: Conformation-sensing antibodies stabilize the oxidized form of PTP1B and inhibit its phosphatase activity. Cell, 147, 2011
5YS2	Structure of the domain IV(D_IV) of Pseudorabies virus glycoprotein B( PRV gB) Descriptor: Envelope glycoprotein B,Envelope glycoprotein B Authors: Hu, X.L, Yang, F.L. Deposit date: 2017-11-12 Release date: 2017-12-27 Last modified: 2018-01-17 Method: X-RAY DIFFRACTION (2.698 Å) Cite: Two classes of protective antibodies against Pseudorabies virus variant glycoprotein B: Implications for vaccine design. PLoS Pathog., 13, 2017
5UBX	Crystal structure of a mutant mIgG2b Fc heterodimer in complex with Protein A peptide analog Z34C Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-[2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-[2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose, Ig gamma-2B chain C region, ... Authors: Armstrong, A.A, Zwolak, A, Gilliland, G.L. Deposit date: 2016-12-21 Release date: 2017-09-20 Last modified: 2023-10-04 Method: X-RAY DIFFRACTION (2.7 Å) Cite: Modulation of protein A binding allows single-step purification of mouse bispecific antibodies that retain FcRn binding. MAbs, 9, 2017
5DVN	Fc K392D/K409D homodimer Descriptor: Fc-III peptide, Ig gamma-1 chain C region Authors: Atwell, S, Leaver-Fay, A, Froning, K.J, Aldaz, H, Pustilnik, A, Lu, F, Huang, F, Yuan, R, Dhanani, S.H, Chamberlain, A.K, Fitchett, J.R, Gutierrez, B, Hendle, J, Demarest, S.J, Kuhlman, B. Deposit date: 2015-09-21 Release date: 2016-03-30 Last modified: 2016-07-06 Method: X-RAY DIFFRACTION (2.5 Å) Cite: Computationally Designed Bispecific Antibodies using Negative State Repertoires. Structure, 24, 2016
5DVO	Fc K392D/K409D homodimer Descriptor: Ig gamma-1 chain C region, SULFATE ION Authors: Atwell, S, Leaver-Fay, A, Froning, K.J, Aldaz, H, Pustilnik, A, Lu, F, Huang, F, Yuan, R, Dhanani, S.H, Chamberlain, A.K, Fitchett, J.R, Gutierrez, B, Hendle, J, Demarest, S.J, Kuhlman, B. Deposit date: 2015-09-21 Release date: 2016-03-30 Last modified: 2016-04-27 Method: X-RAY DIFFRACTION (2.5 Å) Cite: Computationally Designed Bispecific Antibodies using Negative State Repertoires. Structure, 24, 2016
6EUN	Crystal structure of Neisseria meningitidis vaccine antigen NadA variant 3 Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, 1,2-ETHANEDIOL, 1-ETHOXY-2-(2-ETHOXYETHOXY)ETHANE, ... Authors: Dello Iacono, L, Liguori, A, Malito, E, Bottomley, M.J. Deposit date: 2017-10-30 Release date: 2018-10-10 Last modified: 2024-05-08 Method: X-RAY DIFFRACTION (2.45 Å) Cite: NadA3 Structures Reveal Undecad Coiled Coils and LOX1 Binding Regions Competed by Meningococcus B Vaccine-Elicited Human Antibodies. MBio, 9, 2018

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