PDB: 40 resultsInfo pagesStatus searchChemie searchBIRD

---

1EAN	THE RUNX1 Runt domain at 1.70A resolution: A structural switch and specifically bound chloride ions modulate DNA binding Descriptor: CHLORIDE ION, RUNT-RELATED TRANSCRIPTION FACTOR 1 Authors: Backstrom, S, Wolf-Watz, M, Grundstrom, C, Hard, T, Grundstrom, T, Sauer, U.H. Deposit date: 2001-07-13 Release date: 2002-09-12 Last modified: 2023-12-13 Method: X-RAY DIFFRACTION (1.7 Å) Cite: The Runx1 Runt Domain at 1.25 A Resolution: A Structural Switch and Specifically Bound Chloride Ions Modulate DNA Binding J.Mol.Biol., 322, 2002
1EAO	THE RUNX1 Runt domain at 1.4A resolution: a structural switch and specifically bound chloride ions modulate DNA binding Descriptor: BROMIDE ION, RUNT-RELATED TRANSCRIPTION FACTOR 1 Authors: Backstrom, S, Wolf-Watz, M, Grundstrom, C, Hard, T.H, Grundstrom, T, Sauer, U.H. Deposit date: 2001-07-14 Release date: 2002-09-12 Last modified: 2024-05-01 Method: X-RAY DIFFRACTION (1.4 Å) Cite: The Runx1 Runt Domain at 1.25A Resolution: A Structural Switch and Specifically Bound Chloride Ions Modulate DNA Binding J.Mol.Biol., 322, 2002
1EAQ	The RUNX1 Runt domain at 1.25A resolution: A structural switch and specifically bound chloride ions modulate DNA binding Descriptor: CHLORIDE ION, RUNT-RELATED TRANSCRIPTION FACTOR 1 Authors: Backstrom, S, Wolf-Watz, M, Grundstrom, C, Hard, T, Grundstrom, T, Sauer, U.H. Deposit date: 2001-07-14 Release date: 2002-09-12 Last modified: 2024-10-09 Method: X-RAY DIFFRACTION (1.25 Å) Cite: The Runx1 Runt Domain at 1.25 A Resolution: A Structural Switch and Specifically Bound Chloride Ions Modulate DNA Binding J.Mol.Biol., 322, 2002
1GU4	Crystal structure of C/EBPBETA BZIP homodimer bound to a high affinity DNA fragment Descriptor: 5'-D(*AP*AP*TP*AP*TP*TP*GP*CP*GP*CP* AP*AP*TP*CP*CP*T)-3', 5'-D(*TP*AP*GP*GP*AP*TP*TP*GP*CP*GP* CP*AP*AP*TP*AP*T)-3', CAAT/ENHANCER BINDING PROTEIN BETA Authors: Tahirov, T.H, Ogata, K. Deposit date: 2002-01-23 Release date: 2003-06-26 Last modified: 2023-12-13 Method: X-RAY DIFFRACTION (1.8 Å) Cite: Structural Basis for Flexible Base Recognition by C/Ebpbeta To be Published
1GU5	Crystal structure of C/EBPBETA BZIP homodimer bound to a DNA fragment from the MIM-1 promoter Descriptor: 5'-D(*AP*TP*GP*AP*TP*TP*GP*GP*CP*CP* AP*AP*CP*AP*CP*A)-3', 5'-D(*TP*TP*GP*TP*GP*TP*TP*GP*GP*CP* CP*AP*AP*TP*CP*A)-3', CAAT/ENHANCER BINDING PROTEIN BETA Authors: Tahirov, T.H, Ogata, K. Deposit date: 2002-01-24 Release date: 2003-06-26 Last modified: 2023-12-13 Method: X-RAY DIFFRACTION (2.1 Å) Cite: Structural Basis for Flexible Base Recognition by C/Ebpbeta To be Published
1H89	CRYSTAL STRUCTURE OF TERNARY PROTEIN-DNA COMPLEX2 Descriptor: CAAT/ENHANCER BINDING PROTEIN BETA, DNA(5'-(*CP*CP*AP*GP*TP*CP*CP*GP*TP*TP*AP* AP*GP*GP*AP*TP*TP*GP*CP*GP*CP*CP*AP*CP*AP*T)-3'), DNA(5'-(*GP*AP*TP*GP*TP*GP*GP*CP*GP*CP*AP* AP*TP*CP*CP*TP*TP*AP*AP*CP*GP*GP*AP*CP*TP*G)-3'), ... Authors: Tahirov, T.H, Ogata, K. Deposit date: 2001-01-30 Release date: 2002-01-28 Last modified: 2023-12-13 Method: X-RAY DIFFRACTION (2.45 Å) Cite: Mechanism of C-Myb-C/Ebpbeta Cooperation from Separated Sites on a Promoter Cell(Cambridge,Mass.), 108, 2002
1GTW	crystal structure of C/EBPbeta bZip homodimer bound to a DNA fragment from the tom-1A promoter Descriptor: 5'-D(*AP*AP*TP*GP*TP*GP*GP*CP*GP*CP* AP*AP*TP*CP*CP*T)-3', 5'-D(*TP*AP*GP*GP*AP*TP*TP*GP*CP*GP* CP*CP*AP*CP*AP*T)-3', CAAT/ENHANCER BINDING PROTEIN BETA Authors: Tahirov, T.H, Ogata, K. Deposit date: 2002-01-22 Release date: 2004-02-06 Last modified: 2023-12-13 Method: X-RAY DIFFRACTION (1.85 Å) Cite: Structural Basis for Flexible Base Recognition by C/Ebpbeta To be Published
1H8A	CRYSTAL STRUCTURE OF TERNARY PROTEIN-DNA COMPLEX3 Descriptor: CAAT/ENHANCER BINDING PROTEIN BETA, DNA(5'-(*CP*CP*AP*GP*TP*CP*CP*GP*TP*TP*AP* AP*GP*GP*AP*TP*TP*GP*CP*GP*CP*CP*AP*CP*AP*T)-3'), DNA(5'-(*GP*AP*TP*GP*TP*GP*GP*CP*GP*CP*AP* AP*TP*CP*CP*TP*TP*AP*AP*CP*GP*GP*AP*CP*TP*G)-3'), ... Authors: Tahirov, T.H, Ogata, K. Deposit date: 2001-01-31 Release date: 2002-01-28 Last modified: 2023-12-13 Method: X-RAY DIFFRACTION (2.23 Å) Cite: Mechanism of C-Myb-C/Ebpbeta Cooperation from Separated Sites on a Promoter Cell(Cambridge,Mass.), 108, 2002
8E40	Full-length APOBEC3G in complex with HIV-1 Vif, CBF-beta, and fork RNA Descriptor: Core-binding factor subunit beta, DNA dC->dU-editing enzyme APOBEC-3G, RNA, ... Authors: Ito, F, Alvarez-Cabrera, A.L, Liu, S, Yang, H, Shiriaeva, A, Zhou, Z.H, Chen, X.S. Deposit date: 2022-08-17 Release date: 2023-01-11 Last modified: 2024-06-12 Method: ELECTRON MICROSCOPY (3.57 Å) Cite: Structural basis for HIV-1 antagonism of host APOBEC3G via Cullin E3 ligase. Sci Adv, 9, 2023
8FVJ	Dimeric form of HIV-1 Vif in complex with human CBF-beta, ELOB, ELOC, and CUL5 Descriptor: Core-binding factor subunit beta, Cullin-5, Elongin-B, ... Authors: Ito, F, Alvarez-Cabrera, A.L, Zhou, Z.H, Chen, X.S. Deposit date: 2023-01-19 Release date: 2023-09-06 Last modified: 2024-05-01 Method: ELECTRON MICROSCOPY (3.54 Å) Cite: Structural basis of HIV-1 Vif-mediated E3 ligase targeting of host APOBEC3H. Nat Commun, 14, 2023
8FVI	Human APOBEC3H bound to HIV-1 Vif in complex with CBF-beta, ELOB, ELOC, and CUL5 Descriptor: Core-binding factor subunit beta, Cullin 5, DNA dC->dU-editing enzyme APOBEC-3H, ... Authors: Ito, F, Alvarez-Cabrera, A.L, Zhou, Z.H, Chen, X.S. Deposit date: 2023-01-19 Release date: 2023-09-06 Last modified: 2024-05-01 Method: ELECTRON MICROSCOPY (3.24 Å) Cite: Structural basis of HIV-1 Vif-mediated E3 ligase targeting of host APOBEC3H. Nat Commun, 14, 2023
1LJM	DNA recognition is mediated by conformational transition and by DNA bending Descriptor: CHLORIDE ION, RUNX1 transcription factor Authors: Bartfeld, D, Shimon, L, Couture, G.C, Rabinovich, D, Frolow, F, Levanon, D, Groner, Y, Shakked, Z. Deposit date: 2002-04-22 Release date: 2002-11-06 Last modified: 2023-08-16 Method: X-RAY DIFFRACTION (2.5 Å) Cite: DNA Recognition by the RUNX1 Transcription Factor Is Mediated by an Allosteric Transition in the RUNT Domain and by DNA Bending. Structure, 10
3CBF	Crystal structure of LysN, alpha-aminoadipate aminotransferase, from Thermus thermophilus HB27 Descriptor: (2S)-2-[({3-hydroxy-2-methyl-5-[(phosphonooxy)methyl]pyridin-4-yl}methyl)amino]hexanedioic acid, Alpha-aminodipate aminotransferase Authors: Tomita, T, Miyazaki, T, Miyagawa, T, Fushinobu, S, Kuzuyama, T, Nishiyama, M. Deposit date: 2008-02-21 Release date: 2009-01-13 Last modified: 2023-11-01 Method: X-RAY DIFFRACTION (1.67 Å) Cite: Mechanism for multiple-substrates recognition of alpha-aminoadipate aminotransferase from Thermus thermophilus Proteins, 2008
5CBF	Structural and Functional Characterization of a Calcium-activated Cation channel from Tsukamurella Paurometabola Descriptor: CALCIUM ION, Ion transport 2 domain protein Authors: Dhakshnamoorthy, B, Rohaim, A, Rui, H, Blachowicz, L, Roux, B. Deposit date: 2015-06-30 Release date: 2016-07-20 Last modified: 2023-09-27 Method: X-RAY DIFFRACTION (3.61 Å) Cite: Structural and functional characterization of a calcium-activated cation channel from Tsukamurella paurometabola. Nat Commun, 7, 2016
6CBF	Macrophage Migration Inhibitory Factor in Complex with a Pyrazole Inhibitor (6a) Descriptor: 2-phenoxy-5-(1H-pyrazol-4-yl)benzoic acid, Macrophage migration inhibitory factor, SULFATE ION Authors: Robertson, M.J, Krimmer, S.G, Jorgensen, W.L. Deposit date: 2018-02-02 Release date: 2018-04-04 Last modified: 2024-03-13 Method: X-RAY DIFFRACTION (2.3 Å) Cite: Optimization of Pyrazoles as Phenol Surrogates to Yield Potent Inhibitors of Macrophage Migration Inhibitory Factor. ChemMedChem, 13, 2018

<12