PDB: 10243 resultsInfo pagesStatus searchChemie searchBIRD

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8UJB	In situ human 80S ribosome with EBP1 (consensus map) Descriptor: 18S rRNA, 28S rRNA, 40S ribosomal protein S10, ... Authors: Wei, Z, Yong, X. Deposit date: 2023-10-11 Release date: 2025-04-30 Method: ELECTRON MICROSCOPY (2.67 Å) Cite: In situ human 80S ribosome with EBP1 (Consensus map) To Be Published
8RCM	Escherichia coli paused disome complex (Non-rotated disome interface class 2) Descriptor: 1,4-DIAMINOBUTANE, 16S ribosomal RNA, 23S ribosomal RNA, ... Authors: Fluegel, T, Schacherl, M. Deposit date: 2023-12-06 Release date: 2024-03-06 Last modified: 2025-03-12 Method: ELECTRON MICROSCOPY (3.59 Å) Cite: Transient disome complex formation in native polysomes during ongoing protein synthesis captured by cryo-EM. Nat Commun, 15, 2024
8RCL	Escherichia coli paused disome complex (Non-rotated disome interface class 1) Descriptor: 1,4-DIAMINOBUTANE, 16S ribosomal RNA, 23S ribosomal RNA, ... Authors: Fluegel, T, Schacherl, M. Deposit date: 2023-12-06 Release date: 2024-03-13 Last modified: 2025-03-12 Method: ELECTRON MICROSCOPY (3.49 Å) Cite: Transient disome complex formation in native polysomes during ongoing protein synthesis captured by cryo-EM. Nat Commun, 15, 2024
6KE6	3.4 angstrom cryo-EM structure of yeast 90S small subunit preribosome Descriptor: 13 kDa ribonucleoprotein-associated protein, 18S rRNA, 40S ribosomal protein S1-A, ... Authors: Du, Y, Ye, K, An, W. Deposit date: 2019-07-03 Release date: 2020-08-05 Last modified: 2024-03-27 Method: ELECTRON MICROSCOPY (3.4 Å) Cite: 3.4 angstrom cryo-EM structure of yeast 90S small subunit preribosome To be published
8RCT	Escherichia coli paused disome complex (Rotated disome interface class 2) Descriptor: 1,4-DIAMINOBUTANE, 16S ribosomal RNA, 23S ribosomal RNA, ... Authors: Fluegel, T, Schacherl, M. Deposit date: 2023-12-07 Release date: 2024-03-06 Last modified: 2025-03-12 Method: ELECTRON MICROSCOPY (5.32 Å) Cite: Transient disome complex formation in native polysomes during ongoing protein synthesis captured by cryo-EM. Nat Commun, 15, 2024
8RCS	Escherichia coli paused disome complex (Rotated disome interface class 1) Descriptor: 1,4-DIAMINOBUTANE, 16S ribosomal RNA, 23S ribosomal RNA, ... Authors: Fluegel, T, Schacherl, M. Deposit date: 2023-12-07 Release date: 2024-03-06 Last modified: 2025-03-12 Method: ELECTRON MICROSCOPY (4.46 Å) Cite: Transient disome complex formation in native polysomes during ongoing protein synthesis captured by cryo-EM. Nat Commun, 15, 2024
7D5T	Cryo-EM structure of 90S preribosome with inactive Utp24 (state F1) Descriptor: 13 kDa ribonucleoprotein-associated protein, 18S rRNA, 40S ribosomal protein S1-A, ... Authors: Du, Y, Zhang, J, An, W, Ye, K. Deposit date: 2020-09-28 Release date: 2021-10-06 Last modified: 2024-05-29 Method: ELECTRON MICROSCOPY (6 Å) Cite: Cryo-EM structure of 90S preribosome with inactive Utp24 (state F1) To Be Published
8A3L	Structural insights into the binding of bS1 to the ribosome Descriptor: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S1, ... Authors: D'Urso, G, Chat, S, Gillet, R, Giudice, E. Deposit date: 2022-06-08 Release date: 2023-05-10 Last modified: 2025-03-12 Method: ELECTRON MICROSCOPY (3.42 Å) Cite: Structural insights into the binding of bS1 to the ribosome. Nucleic Acids Res., 51, 2023
8XXM	Cryo-EM structure of the human 40S ribosome with PDCD4 and eIF3G Descriptor: 18S rRNA, 40S ribosomal protein S10, 40S ribosomal protein S11, ... Authors: Ye, X, Huang, Z, Li, Y, Wang, M, Cheng, J. Deposit date: 2024-01-18 Release date: 2024-05-01 Last modified: 2024-07-10 Method: ELECTRON MICROSCOPY (3.2 Å) Cite: Human tumor suppressor PDCD4 directly interacts with ribosomes to repress translation. Cell Res., 34, 2024
5O9Z	Cryo-EM structure of a pre-catalytic human spliceosome primed for activation (B complex) Descriptor: 116 kDa U5 small nuclear ribonucleoprotein component, Homo sapiens RNA, U6 small nuclear 1 (RNU6-1), ... Authors: Bertram, K, Kastner, B. Deposit date: 2017-06-20 Release date: 2017-08-16 Last modified: 2025-07-09 Method: ELECTRON MICROSCOPY (4.5 Å) Cite: Cryo-EM Structure of a Pre-catalytic Human Spliceosome Primed for Activation. Cell, 170, 2017
8YF5	Cryo EM structure of Komagataella phaffii Rat1-Rai1-Rtt103 complex Descriptor: 5'-3' exoribonuclease, Decapping nuclease, Exonuclease Rat1p and Rai1p interacting protein Authors: Yanagisawa, T, Murayama, Y, Ehara, H, Sekine, S.I. Deposit date: 2024-02-24 Release date: 2024-09-25 Last modified: 2025-06-18 Method: ELECTRON MICROSCOPY (3.78 Å) Cite: Structural basis of eukaryotic transcription termination by the Rat1 exonuclease complex. Nat Commun, 15, 2024
7D63	Cryo-EM structure of 90S preribosome with inactive Utp24 (state C) Descriptor: 13 kDa ribonucleoprotein-associated protein, 18S rRNA, 40S ribosomal protein S1-A, ... Authors: Du, Y, Zhang, J, An, W, Ye, K. Deposit date: 2020-09-29 Release date: 2021-10-06 Last modified: 2024-05-29 Method: ELECTRON MICROSCOPY (12.3 Å) Cite: Cryo-EM structure of 90S preribosome with inactive Utp24 (state C) To Be Published
8XXL	Cryo-EM structure of the human 40S ribosome with PDCD4 Descriptor: 18S rRNA, 40S ribosomal protein S10, 40S ribosomal protein S11, ... Authors: Ye, X, Huang, Z, Li, Y, Wang, M, Cheng, J. Deposit date: 2024-01-18 Release date: 2024-05-01 Last modified: 2024-07-10 Method: ELECTRON MICROSCOPY (2.9 Å) Cite: Human tumor suppressor PDCD4 directly interacts with ribosomes to repress translation. Cell Res., 34, 2024
1UEV	Divergent evolutions of trinucleotide polymerization revealed by an archaeal CCA-adding enzyme structure Descriptor: ADENOSINE-5'-TRIPHOSPHATE, CALCIUM ION, MAGNESIUM ION, ... Authors: Nureki, O, RIKEN Structural Genomics/Proteomics Initiative (RSGI) Deposit date: 2003-05-21 Release date: 2003-12-02 Last modified: 2023-12-27 Method: X-RAY DIFFRACTION (2.7 Å) Cite: Divergent evolutions of trinucleotide polymerization revealed by an archaeal CCA-adding enzyme structure. Embo J., 22, 2003
1UET	Divergent evolutions of trinucleotide polymerization revealed by an archaeal CCA-adding enzyme structure Descriptor: ACETATE ION, CALCIUM ION, MAGNESIUM ION, ... Authors: Nureki, O, RIKEN Structural Genomics/Proteomics Initiative (RSGI) Deposit date: 2003-05-21 Release date: 2003-12-02 Last modified: 2023-12-27 Method: X-RAY DIFFRACTION (2 Å) Cite: Divergent evolutions of trinucleotide polymerization revealed by an archaeal CCA-adding enzyme structure. Embo J., 22, 2003
1UEU	Divergent evolutions of trinucleotide polymerization revealed by an archaeal CCA-adding enzyme structure Descriptor: ACETATE ION, CYTIDINE-5'-TRIPHOSPHATE, MAGNESIUM ION, ... Authors: Nureki, O, RIKEN Structural Genomics/Proteomics Initiative (RSGI) Deposit date: 2003-05-21 Release date: 2003-12-02 Last modified: 2024-12-25 Method: X-RAY DIFFRACTION (2 Å) Cite: Divergent evolutions of trinucleotide polymerization revealed by an archaeal CCA-adding enzyme structure. Embo J., 22, 2003
7F60	Crystal structure of auxiliary protein in complex with human nuclear protein Descriptor: Nuclear pore complex protein Nup98-Nup96, ORF6 protein, mRNA export factor Authors: Gao, X, Cui, S. Deposit date: 2021-06-23 Release date: 2022-09-14 Last modified: 2023-11-29 Method: X-RAY DIFFRACTION (2.85 Å) Cite: Structural basis for Sarbecovirus ORF6 mediated blockage of nucleocytoplasmic transport Nat Commun, 13, 2022
7F90	Crystal structure of SARS auxiliary protein in complex with human nuclear protein Descriptor: Nuclear pore complex protein Nup98-Nup96, ORF6 protein, mRNA export factor Authors: Gao, X, Cui, S. Deposit date: 2021-07-03 Release date: 2022-09-14 Last modified: 2023-11-29 Method: X-RAY DIFFRACTION (2.39 Å) Cite: Structural basis for Sarbecovirus ORF6 mediated blockage of nucleocytoplasmic transport Nat Commun, 13, 2022
7QWR	Structure of the ribosome-nascent chain containing an ER signal sequence in complex with NAC Descriptor: 28S rRNA, 5.8S ribosomal RNA, 5S ribosomal RNA, ... Authors: Jomaa, A, Gamerdinger, M, Hsieh, H, Wallisch, A, Chandrasekaran, V, Ulusoy, Z, Scaiola, A, Hegde, R, Shan, S, Ban, N, Deuerling, E. Deposit date: 2022-01-25 Release date: 2022-03-09 Last modified: 2024-07-17 Method: ELECTRON MICROSCOPY (2.9 Å) Cite: Mechanism of signal sequence handover from NAC to SRP on ribosomes during ER-protein targeting. Science, 375, 2022
7D5S	Cryo-EM structure of 90S preribosome with inactive Utp24 (state A2) Descriptor: 13 kDa ribonucleoprotein-associated protein, 18S rRNA, 40S ribosomal protein S12, ... Authors: Du, Y, Zhang, J, An, W, Ye, K. Deposit date: 2020-09-28 Release date: 2021-10-06 Last modified: 2024-05-29 Method: ELECTRON MICROSCOPY (4.6 Å) Cite: Cryo-EM structure of 90S preribosome with inactive Utp24 (state A2) To Be Published
9OMA	Cryo-EM structure of PCMTD1-ELOBC-CUL5-RBX2 (CRL5-PCMTD1) Descriptor: Cullin-5, Elongin-B, Elongin-C, ... Authors: Pang, E.Z, Zhao, B, Flowers, C, Oroudjeva, E, Winters, J.B, Pandey, V, Sawaya, M.R, Wohlschlegel, W, Loo, J.A, Rodriguez, J.A, Clarke, S.G. Deposit date: 2025-05-13 Release date: 2025-06-04 Last modified: 2025-06-18 Method: ELECTRON MICROSCOPY (4.14 Å) Cite: Structural basis for L-isoaspartyl-containing protein recognition by the PCMTD1 cullin-RING E3 ubiquitin ligase. Biorxiv, 2025
9OMF	Cryo-EM structure of neddylated PCMTD1-ELOBC-CUL5-RBX2 (N8-CRL5-PCMTD1) Descriptor: Cullin-5, Elongin-B, Elongin-C, ... Authors: Pang, E.Z, Zhao, B, Flowers, C, Oroudjeva, E, Winters, J.B, Pandey, V, Sawaya, M.R, Wohlschlegel, W, Loo, J.A, Rodriguez, J.A, Clarke, S.G. Deposit date: 2025-05-13 Release date: 2025-06-04 Last modified: 2025-06-18 Method: ELECTRON MICROSCOPY (9.72 Å) Cite: Structural basis for L-isoaspartyl-containing protein recognition by the PCMTD1 cullin-RING E3 ubiquitin ligase. Biorxiv, 2025
8YFE	Cryo EM structure of Komagataella phaffii Rat1-Rai1 complex Descriptor: 5'-3' exoribonuclease, Decapping nuclease Authors: Yanagisawa, T, Murayama, Y, Ehara, H, Sekine, S.I. Deposit date: 2024-02-24 Release date: 2024-09-25 Last modified: 2025-06-18 Method: ELECTRON MICROSCOPY (3.47 Å) Cite: Structural basis of eukaryotic transcription termination by the Rat1 exonuclease complex. Nat Commun, 15, 2024
7ZYG	CryoEM structure of Ku heterodimer bound to DNA, PAXX and XLF Descriptor: DNA, Non-homologous end-joining factor 1, PHOSPHATE ION, ... Authors: Hardwick, S.W, Kefala-Stavridi, A, Chirgadze, D.Y, Blundell, T.L, Chaplin, A.K. Deposit date: 2022-05-24 Release date: 2023-06-07 Last modified: 2024-07-24 Method: ELECTRON MICROSCOPY (2.68 Å) Cite: PAXX binding to the NHEJ machinery explains functional redundancy with XLF. Sci Adv, 9, 2023
7QWS	Structure of ribosome translating beta-tubulin in complex with TTC5 and NAC Descriptor: 28S rRNA, 5.8S rRNA, 5S rRNA, ... Authors: Jomaa, A, Gamerdinger, M, Hsieh, H, Wallisch, A, Chandrasekaran, V, Ulusoy, Z, Scaiola, A, Hegde, R, Shan, S, Ban, N, Deuerling, E. Deposit date: 2022-01-25 Release date: 2022-03-09 Last modified: 2024-07-17 Method: ELECTRON MICROSCOPY (3.4 Å) Cite: Mechanism of signal sequence handover from NAC to SRP on ribosomes during ER-protein targeting. Science, 375, 2022

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