PDB: 225946 resultsInfo pagesStatus searchChemie searchBIRD

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2DXY	Structure of the complex of C-terminal lobe of bovine lactoferrin with trehalose at 2.0 A resolution Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, CARBONATE ION, FE (III) ION, ... Authors: Mir, R, Singh, N, Sinha, M, Sharma, S, Bhushan, A, Singh, T.P. Deposit date: 2006-09-03 Release date: 2006-09-19 Last modified: 2023-10-25 Method: X-RAY DIFFRACTION (2.03 Å) Cite: Structure of the complex of C-terminal lobe of bovine lactoferrin with trehalose at 2.0 A resolution To be Published
2DY0	Crystal structure of project JW0458 from Escherichia coli Descriptor: Adenine phosphoribosyltransferase, MAGNESIUM ION Authors: Shimizu, K, RIKEN Structural Genomics/Proteomics Initiative (RSGI) Deposit date: 2006-09-04 Release date: 2007-03-04 Last modified: 2023-10-25 Method: X-RAY DIFFRACTION (1.25 Å) Cite: Crystal structure of JW0458 from Escherichia coli To be Published
2DY1	Crystal structure of EF-G-2 from Thermus thermophilus Descriptor: Elongation factor G, GUANOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION Authors: Wang, H, Takemoto, C, Murayama, K, Terada, T, Chen, L, Liu, Z.J, Wang, B.C, Shirouzu, M, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI) Deposit date: 2006-09-04 Release date: 2007-09-25 Last modified: 2023-10-25 Method: X-RAY DIFFRACTION (1.6 Å) Cite: Crystal structure of EF-G-2 from Thermus thermophilus To be Published
2DY2	Nitrite reductase pH 6.0 Descriptor: COPPER (II) ION, Copper-containing nitrite reductase Authors: Jacobson, F. Deposit date: 2006-09-05 Release date: 2006-12-05 Last modified: 2023-10-25 Method: X-RAY DIFFRACTION (2.26 Å) Cite: pH Dependence of Copper Geometry, Reduction Potential, and Nitrite Affinity in Nitrite Reductase J.Biol.Chem., 282, 2007
2DY3	Crystal Structure of alanine racemase from Corynebacterium glutamicum Descriptor: Alanine racemase, PYRIDOXAL-5'-PHOSPHATE Authors: Miyaguchi, I, Sasaki, C, Kato, R, Oikawa, T, Sugio, S. Deposit date: 2006-09-05 Release date: 2007-09-11 Last modified: 2023-10-25 Method: X-RAY DIFFRACTION (2.1 Å) Cite: Crystal Structure of Alanine Racemase from Corynebacterium glutamicum at 2.1 A resolution To be Published
2DY4	Crystal structure of RB69 GP43 in complex with DNA containing Thymine Glycol Descriptor: 5'-D(*CP*GP*(CTG)P*GP*GP*AP*AP*TP*GP*A*CP*AP*GP*CP*CP*GP*CP*G)-3', 5'-D(*GP*CP*GP*GP*CP*TP*GP*T*CP*AP*TP*TP*CP*CP*A)-3', DNA polymerase Authors: Aller, P, Rould, M.A, Hogg, M, Wallace, S.S, Doublie, S. Deposit date: 2006-09-06 Release date: 2007-01-09 Last modified: 2023-11-15 Method: X-RAY DIFFRACTION (2.65 Å) Cite: A structural rationale for stalling of a replicative DNA polymerase at the most common oxidative thymine lesion, thymine glycol. Proc.Natl.Acad.Sci.USA, 104, 2007
2DY5	Crystal structure of rat heme oxygenase-1 in complex with heme and 2-[2-(4-chlorophenyl)ethyl]-2-[(1H-imidazol-1-yl)methyl]-1,3-dioxolane Descriptor: 1-({2-[2-(4-CHLOROPHENYL)ETHYL]-1,3-DIOXOLAN-2-YL}METHYL)-1H-IMIDAZOLE, CHLORIDE ION, Heme oxygenase 1, ... Authors: Sugishima, M, Takahashi, H, Fukuyama, K. Deposit date: 2006-09-06 Release date: 2007-05-22 Last modified: 2023-10-25 Method: X-RAY DIFFRACTION (2.7 Å) Cite: X-ray crystallographic and biochemical characterization of the inhibitory action of an imidazole-dioxolane compound on heme oxygenase Biochemistry, 46, 2007
2DY7	Solution structure of the first chromodomain of yeast Chd1 Descriptor: Chromo domain protein 1 Authors: Okuda, M, Nishimura, Y. Deposit date: 2006-09-07 Release date: 2006-11-28 Last modified: 2024-05-29 Method: SOLUTION NMR Cite: Structural Polymorphism of Chromodomains in Chd1 J.Mol.Biol., 365, 2007
2DY8	Solution structure of the second chromodomain of yeast Chd1 Descriptor: Chromo domain protein 1 Authors: Okuda, M, Nishimura, Y. Deposit date: 2006-09-07 Release date: 2006-11-28 Last modified: 2024-05-29 Method: SOLUTION NMR Cite: Structural Polymorphism of Chromodomains in Chd1 J.Mol.Biol., 365, 2007
2DY9	Crystal structure of nucleoside diphosphate kinase in complex with ADP Descriptor: ADENOSINE-5'-DIPHOSPHATE, CHLORIDE ION, MAGNESIUM ION, ... Authors: Kato-Murayama, M, Murayama, K, Terada, T, Shirouzu, M, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI) Deposit date: 2006-09-08 Release date: 2007-03-08 Last modified: 2023-10-25 Method: X-RAY DIFFRACTION (2.01 Å) Cite: Crystal structure of nucleoside diphosphate kinase in complex with ADP To be Published
2DYA	Crystal structure of complex between Adenine nucleotide and nucleoside diphosphate kinase Descriptor: ADENOSINE-5'-DIPHOSPHATE, CHLORIDE ION, MAGNESIUM ION, ... Authors: Kato-Murayama, M, Murayama, K, Terada, T, Shirouzu, M, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI) Deposit date: 2006-09-08 Release date: 2007-03-08 Last modified: 2023-10-25 Method: X-RAY DIFFRACTION (1.77 Å) Cite: Crystal structure of complex between Adenine nucleotide and nucleoside diphosphate kinase To be Published
2DYB	The crystal structure of human p40(phox) Descriptor: Neutrophil cytosol factor 4 Authors: Honbou, K. Deposit date: 2006-09-08 Release date: 2007-01-23 Last modified: 2023-10-25 Method: X-RAY DIFFRACTION (3.15 Å) Cite: Full-length p40phox structure suggests a basis for regulation mechanism of its membrane binding. Embo J., 26, 2007
2DYC	Crystal structure of the N-terminal domain of mouse galectin-4 Descriptor: Galectin-4 Authors: Kato-Murayama, M, Murayama, K, Terada, T, Shirouzu, M, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI) Deposit date: 2006-09-08 Release date: 2007-10-16 Last modified: 2024-10-09 Method: X-RAY DIFFRACTION (2.4 Å) Cite: Crystal structure of the N-terminal domain of mouse galectin-4 To be Published
2DYD	Solution structure of the PABC domain from Triticum aevestium poly(A)-binding protein Descriptor: Poly(A)-binding protein Authors: Siddiqui, N. Deposit date: 2006-09-10 Release date: 2007-05-22 Last modified: 2024-05-29 Method: SOLUTION NMR Cite: Solution structure of the PABC domain from wheat poly (A)-binding protein: an insight into RNA metabolic and translational control in plants Biochemistry, 46, 2007
2DYF	Solution structure of the first WW domain of FBP11 / HYPA (FBP11 WW1) complexed with a PL (PPLP) motif peptide ligand Descriptor: Huntingtin-interacting protein HYPA/FBP11, PL (PPLP) motif peptide from Myosin tail region-interacting protein MTI1 Authors: Kato, Y, Miyakawa, T, Kurita, J, Tanokura, M. Deposit date: 2006-09-11 Release date: 2006-10-24 Last modified: 2024-05-29 Method: SOLUTION NMR Cite: Complex structure of fbp11 ww1 and a pl ligand reveals the mechanism of proline-rich ligand recognition by group-II/III ww domains To be Published
2DYH	Crystal structure of the Keap1 protein in complexed with the N-terminal region of the Nrf2 transcription factor Descriptor: Kelch-like ECH-associated protein 1, Nrf2/Neh2 peptide from Nuclear factor erythroid 2-related factor 2, SULFATE ION Authors: Padmanabhan, B, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI) Deposit date: 2006-09-14 Release date: 2007-09-04 Last modified: 2023-10-25 Method: X-RAY DIFFRACTION (1.9 Å) Cite: Different electrostatic potentials define ETGE and DLG motifs as hinge and latch in oxidative stress response Mol.Cell.Biol., 27, 2007
2DYI	Crystal structure of 16S ribosomal RNA processing protein RimM from Thermus thermophilus HB8 Descriptor: Probable 16S rRNA-processing protein rimM Authors: Kawazoe, M, Takemoto, C, Kaminishi, T, Tatsuguchi, A, Shirouzu, M, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI) Deposit date: 2006-09-14 Release date: 2007-03-14 Last modified: 2024-04-03 Method: X-RAY DIFFRACTION (2 Å) Cite: Crystal structure of 16S ribosomal RNA processing protein RimM from Thermus thermophilus HB8 To be published
2DYJ	Crystal structure of ribosome-binding factor A from Thermus thermophilus HB8 Descriptor: Ribosome-binding factor A Authors: Kawazoe, M, Takemoto, C, Nakayama-Ushikoshi, R, Terada, T, Shirouzu, M, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI) Deposit date: 2006-09-14 Release date: 2007-03-14 Last modified: 2023-10-25 Method: X-RAY DIFFRACTION (1.84 Å) Cite: Structural aspects of RbfA action during small ribosomal subunit assembly. Mol.Cell, 28, 2007
2DYK	Crystal structure of N-terminal GTP-binding domain of EngA from Thermus thermophilus HB8 Descriptor: GTP-binding protein, GUANOSINE-5'-DIPHOSPHATE Authors: Kawazoe, M, Takemoto, C, Fusatomi, E, Terada, T, Shirouzu, M, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI) Deposit date: 2006-09-14 Release date: 2007-03-14 Last modified: 2023-10-25 Method: X-RAY DIFFRACTION (1.96 Å) Cite: Crystal structure of N-terminal GTP-binding domain of EngA from Thermus thermophilus HB8 to be published
2DYL	Crystal structure of human mitogen-activated protein kinase kinase 7 activated mutant (S287D, T291D) Descriptor: Dual specificity mitogen-activated protein kinase kinase 7 Authors: Kukimoto-Niino, M, Takagi, T, Kaminishi, T, Uchikubo-Kamo, T, Terada, T, Matsuzaki, O, Shirouzu, M, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI) Deposit date: 2006-09-15 Release date: 2007-08-28 Last modified: 2023-10-25 Method: X-RAY DIFFRACTION (2.45 Å) Cite: Crystal structure of human mitogen-activated protein kinase kinase 7 activated mutant (S287D, T291D) To be Published
2DYM	The crystal structure of Saccharomyces cerevisiae Atg5- Atg16(1-46) complex Descriptor: Autophagy protein 16, Autophagy protein 5 Authors: Matsushita, M, Suzuki, N.N, Inagaki, F. Deposit date: 2006-09-15 Release date: 2006-12-26 Last modified: 2024-03-13 Method: X-RAY DIFFRACTION (2.2 Å) Cite: Structure of Atg5.Atg16, a complex essential for autophagy J.Biol.Chem., 282, 2007
2DYN	DYNAMIN (PLECKSTRIN HOMOLOGY DOMAIN) (DYNPH) Descriptor: DYNAMIN Authors: Timm, D.E. Deposit date: 1997-07-21 Release date: 1997-11-12 Last modified: 2024-02-14 Method: X-RAY DIFFRACTION (2.3 Å) Cite: Crystal structure of the pleckstrin homology domain from dynamin. Nat.Struct.Biol., 1, 1994
2DYO	The crystal structure of Saccharomyces cerevisiae Atg5- Atg16(1-57) complex Descriptor: Autophagy protein 16, Autophagy protein 5 Authors: Matsushita, M, Suzuki, N.N, Inagaki, F. Deposit date: 2006-09-15 Release date: 2006-12-26 Last modified: 2024-03-13 Method: X-RAY DIFFRACTION (1.97 Å) Cite: Structure of Atg5.Atg16, a complex essential for autophagy J.Biol.Chem., 282, 2007
2DYP	Crystal Structure of LILRB2(LIR2/ILT4/CD85d) complexed with HLA-G Descriptor: 9 Mer Peptide From Histone H2A.x, Beta-2-microglobulin, HLA class I histocompatibility antigen, ... Authors: Shiroishi, M, Kuroki, K, Rasubala, L, Kohda, D, Maenaka, K. Deposit date: 2006-09-15 Release date: 2006-11-07 Last modified: 2023-10-25 Method: X-RAY DIFFRACTION (2.5 Å) Cite: Structural basis for recognition of the nonclassical MHC molecule HLA-G by the leukocyte Ig-like receptor B2 (LILRB2/LIR2/ILT4/CD85d) Proc.Natl.Acad.Sci.Usa, 103, 2006
2DYQ	Crystal Structure of the C-terminal Phophotyrosine Interaction Domain of Human APBB3 Descriptor: Amyloid beta A4 precursor protein-binding family B member 3 Authors: Nishino, A, Saijo, S, Kishishita, S, Shirouzu, M, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI) Deposit date: 2006-09-16 Release date: 2007-09-18 Last modified: 2011-07-13 Method: X-RAY DIFFRACTION (3.1 Å) Cite: Crystal Structure of the C-terminal Phophotyrosine Interaction Domain of Human APBB3 To be Published

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