PDB: 5515 resultsInfo pagesStatus searchChemie searchBIRD

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4KY1	humanized HP1/2 Fab Descriptor: IMMUNOGLOBULIN IGG1 FAB, HEAVY CHAIN, LIGHT CHAIN Authors: Arndt, J.W, Hanf, K.J.M, Lugovskoy, A, Chen, L.L, Jarpe, M, Boriack-Sjodin, A, Li, Y, van Vlijmen, H, Pepinsky, B, Taylor, F, Silvian, L, Taveras, A. Deposit date: 2013-05-28 Release date: 2013-07-24 Last modified: 2023-09-20 Method: X-RAY DIFFRACTION (2.97 Å) Cite: Antibody humanization by redesign of complementarity-determining region residues proximate to the acceptor framework. METHODS (SAN DIEGO), 65, 2014
2Q33	Crystal structure of all-D monellin at 1.8 A resolution Descriptor: D-MONELLIN CHAIN A, D-MONELLIN CHAIN B Authors: Hung, L.-W, Kohmura, M, Ariyoshi, Y, Kim, S.-H. Deposit date: 2007-05-29 Release date: 2007-11-13 Last modified: 2017-10-18 Method: X-RAY DIFFRACTION (1.8 Å) Cite: Structure of an Enantiomeric Protein, D-Monellin at 1.8 A Resolution. Acta Crystallogr.,Sect.D, 54, 1998
4ZCN	Crystal structure of nvPizza2-S16S58 Descriptor: IODIDE ION, SULFATE ION, nvPizza2-S16S58 Authors: Voet, A.R.D, Noguchi, H, Addy, C, Zhang, K.Y.J, Tame, J.R.H. Deposit date: 2015-04-16 Release date: 2015-07-01 Last modified: 2023-11-08 Method: X-RAY DIFFRACTION (1.3 Å) Cite: Crystal structure of nvPizza2-S16S58 To Be Published
4KWV	Crystal Structure of human apo-QPRT Descriptor: Nicotinate-nucleotide pyrophosphorylase [carboxylating] Authors: Malik, S.S, Patterson, D.N, Ncube, Z, Toth, E.A. Deposit date: 2013-05-24 Release date: 2013-10-02 Last modified: 2023-09-20 Method: X-RAY DIFFRACTION (2.797 Å) Cite: The crystal structure of human quinolinic acid phosphoribosyltransferase in complex with its inhibitor phthalic acid. Proteins, 82, 2014
3C3H	alpha/beta-Peptide helix bundles: A GCN4-pLI analogue with an (alpha-alpha-beta) backbone and cyclic beta residues Descriptor: alpha/beta-peptide based on the GCN4-pLI side chain sequence, with an (alpha-alpha-beta) backbone and cyclic beta-residues at positions 1, 4, ... Authors: Horne, W.S, Price, J.L, Gellman, S.H. Deposit date: 2008-01-28 Release date: 2008-06-17 Last modified: 2024-07-10 Method: X-RAY DIFFRACTION (2.2 Å) Cite: Interplay among side chain sequence, backbone composition, and residue rigidification in polypeptide folding and assembly. Proc.Natl.Acad.Sci.Usa, 105, 2008
4LBT	Endothiapepsin in complex with 100mM acylhydrazone inhibitor Descriptor: (2S)-2-azanyl-3-(3H-indol-3-yl)-N-[(E)-(2,4,6-trimethylphenyl)methylideneamino]propanamide, DIMETHYL SULFOXIDE, Endothiapepsin, ... Authors: Radeva, N, Heine, A, Winquist, J, Klebe, G. Deposit date: 2013-06-21 Release date: 2014-04-02 Last modified: 2023-09-20 Method: X-RAY DIFFRACTION (1.251 Å) Cite: Structure-based design of inhibitors of the aspartic protease endothiapepsin by exploiting dynamic combinatorial chemistry. Angew.Chem.Int.Ed.Engl., 53, 2014
4LHH	Endothiapepsin in complex with 2mM acylhydrazone inhibitor Descriptor: (2S)-2-azanyl-3-(3H-indol-3-yl)-N-[(E)-(2,4,6-trimethylphenyl)methylideneamino]propanamide, ACETATE ION, DIMETHYL SULFOXIDE, ... Authors: Radeva, N, Heine, A, Klebe, G. Deposit date: 2013-07-01 Release date: 2014-04-02 Last modified: 2023-09-20 Method: X-RAY DIFFRACTION (1.73 Å) Cite: Structure-based design of inhibitors of the aspartic protease endothiapepsin by exploiting dynamic combinatorial chemistry. Angew.Chem.Int.Ed.Engl., 53, 2014
4KWW	The crystal structure of human quinolinic acid phosphoribosyltransferase in complex with its inhibitor phthalic acid Descriptor: Nicotinate-nucleotide pyrophosphorylase [carboxylating], PHTHALIC ACID Authors: Malik, S.S, Dimeka, P.N, Ncube, Z, Toth, E.A. Deposit date: 2013-05-24 Release date: 2013-10-02 Last modified: 2023-09-20 Method: X-RAY DIFFRACTION (2.55 Å) Cite: The crystal structure of human quinolinic acid phosphoribosyltransferase in complex with its inhibitor phthalic acid. Proteins, 82, 2014
3CWO	A beta/alpha-barrel built by the combination of fragments from different folds Descriptor: SULFATE ION, beta/alpha-barrel protein based on 1THF and 1TMY Authors: Bharat, T.A.M, Eisenbeis, S, Zeth, K, Hocker, B. Deposit date: 2008-04-22 Release date: 2008-07-08 Last modified: 2023-08-30 Method: X-RAY DIFFRACTION (3.1 Å) Cite: A beta alpha-barrel built by the combination of fragments from different folds. Proc.Natl.Acad.Sci.Usa, 105, 2008
4ATZ	Ad5 knob in complex with a designed ankyrin repeat protein Descriptor: DESIGNED ANKYRIN REPEAT PROTEIN, Fiber protein Authors: Mittl, P.R.E, Hess, C, Dreier, B. Deposit date: 2012-05-11 Release date: 2013-02-27 Last modified: 2023-12-20 Method: X-RAY DIFFRACTION (1.95 Å) Cite: Development of a generic adenovirus delivery system based on structure-guided design of bispecific trimeric DARPin adapters. Proc. Natl. Acad. Sci. U.S.A., 110, 2013
3BX7	Engineered Human Lipocalin 2 (LCN2) in Complex with the Extracellular Domain of Human CTLA-4 Descriptor: CYTOTOXIC T-LYMPHOCYTE-ASSOCIATED ANTIGEN 4, ENGINEERED HUMAN LIPOCALIN 2 Authors: Schonfeld, D.L, Chatwell, L, Skerra, A. Deposit date: 2008-01-11 Release date: 2009-01-20 Last modified: 2023-08-30 Method: X-RAY DIFFRACTION (2.1 Å) Cite: High affinity molecular recognition and functional blockade of CTLA-4 by an engineered human lipocalin To be Published
7JXN	Beta hairpin derived from Abeta17-36 with an F20Cha mutation Descriptor: Amyloid-beta 17-36 peptide, CHLORIDE ION, SODIUM ION Authors: Kreutzer, A.G, Haerianardakani, S, Nowick, J.S. Deposit date: 2020-08-27 Release date: 2020-12-09 Last modified: 2020-12-23 Method: X-RAY DIFFRACTION (2 Å) Cite: Phenylalanine Mutation to Cyclohexylalanine Facilitates Triangular Trimer Formation by beta-Hairpins Derived from A beta. J.Am.Chem.Soc., 142, 2020
4LNY	Crystal Structure of Engineered Protein, Northeast Structural Genomics Consortium Target OR422 Descriptor: CADMIUM ION, CHLORIDE ION, Engineered Protein OR422 Authors: Vorobiev, S, Su, M, Bjelic, S, Kipnis, Y, Wang, L, Sahdev, S, Xiao, R, Maglaqui, M, Kogan, S, Baker, D, Everett, J.K, Acton, T.B, Montelione, G.T, Hunt, J.F, Tong, L, Northeast Structural Genomics Consortium (NESG) Deposit date: 2013-07-12 Release date: 2013-08-07 Last modified: 2023-12-06 Method: X-RAY DIFFRACTION (1.929 Å) Cite: Crystal Structure of Engineered Protein OR422. To be Published
3B3N	Structure of neuronal NOS heme domain in complex with a inhibitor (+-)-N1-{cis-4'-[(6"-aminopyridin-2"-yl)methyl]pyrrolidin-3'-yl}ethane-1,2-diamine Descriptor: 5,6,7,8-TETRAHYDROBIOPTERIN, ACETATE ION, N-{(3S,4S)-4-[(6-aminopyridin-2-yl)methyl]pyrrolidin-3-yl}ethane-1,2-diamine, ... Authors: Igarashi, J, Li, H, Poulos, T.L. Deposit date: 2007-10-22 Release date: 2008-07-15 Last modified: 2024-02-21 Method: X-RAY DIFFRACTION (1.98 Å) Cite: Minimal pharmacophoric elements and fragment hopping, an approach directed at molecular diversity and isozyme selectivity. Design of selective neuronal nitric oxide synthase inhibitors. J.Am.Chem.Soc., 130, 2008
5BVB	Engineered Digoxigenin binder DIG5.1a Descriptor: DIG5.1a, DIGOXIGENIN Authors: Doyle, L.A, Stoddard, B.L. Deposit date: 2015-06-04 Release date: 2015-10-28 Last modified: 2023-09-27 Method: X-RAY DIFFRACTION (2.06 Å) Cite: CSAR Benchmark Exercise 2013: Evaluation of Results from a Combined Computational Protein Design, Docking, and Scoring/Ranking Challenge. J.Chem.Inf.Model., 56, 2016
4LPW	Crystal structure of TENCON variant A6 Descriptor: TENCON variant A6 Authors: Teplyakov, A, Obmolova, G, Gilliland, G.L. Deposit date: 2013-07-16 Release date: 2014-01-29 Last modified: 2023-09-20 Method: X-RAY DIFFRACTION (2.8 Å) Cite: C-terminal beta-strand swapping in a consensus-derived fibronectin Type III scaffold. Proteins, 82, 2014
4JMH	Crystal structure of synthetic protein in complex with double pY peptide Descriptor: Clamp Shc1_pY239/240, SHC-transforming protein 1 Authors: Yasui, N, Smith, L, Koide, S. Deposit date: 2013-03-14 Release date: 2014-04-23 Last modified: 2023-12-06 Method: X-RAY DIFFRACTION (2.408 Å) Cite: Directed network wiring identifies a key protein interaction in embryonic stem cell differentiation. Mol.Cell, 54, 2014
7JXO	Triangular trimer of beta-hairpins derived from Abeta17-36 with an F20Cha mutation Descriptor: Amyloid-beta 17-36 peptide Authors: Kreutzer, A.G, Haerianardakani, S, Nowick, J.S. Deposit date: 2020-08-27 Release date: 2020-12-09 Last modified: 2023-10-18 Method: X-RAY DIFFRACTION (2.81 Å) Cite: Phenylalanine Mutation to Cyclohexylalanine Facilitates Triangular Trimer Formation by beta-Hairpins Derived from A beta. J.Am.Chem.Soc., 142, 2020
3CSB	Crystal Structure of Monobody YSX1/Maltose Binding Protein Fusion Complex Descriptor: 1,2-ETHANEDIOL, DI(HYDROXYETHYL)ETHER, MANGANESE (II) ION, ... Authors: Gilbreth, R.N, Koide, S. Deposit date: 2008-04-09 Release date: 2008-07-22 Last modified: 2024-02-21 Method: X-RAY DIFFRACTION (1.999 Å) Cite: A Dominant Conformational Role for Amino Acid Diversity in Minimalist Protein-Protein Interfaces J.Mol.Biol., 381, 2008
4ZXZ	Crystal structure of a highly thermal stable but inactive levoglucosan kinase. Descriptor: Levoglucosan kinase Authors: Bacik, J.P, Klesmith, J.R, Whitehead, T.A. Deposit date: 2015-05-20 Release date: 2015-09-23 Last modified: 2023-09-27 Method: X-RAY DIFFRACTION (2.2 Å) Cite: Comprehensive Sequence-Flux Mapping of a Levoglucosan Utilization Pathway in E. coli. Acs Synth Biol, 4, 2015
2RT4	NMR Structure of designed protein, AF.2A1, (Ensembles) Descriptor: AF.2A1 Authors: Watanabe, H, Yamasaki, K, Honda, S. Deposit date: 2013-04-18 Release date: 2014-01-01 Last modified: 2024-05-15 Method: SOLUTION NMR Cite: Tracing primordial protein evolution through structurally guided stepwise segment elongation. J.Biol.Chem., 289, 2014
4JW2	Selection of specific protein binders for pre-defined targets from an optimized library of artificial helicoidal repeat proteins (alphaRep) Descriptor: 1,2-ETHANEDIOL, A3 artificial protein, bA3-2: binder of A3 protein Authors: Guellouz, A, Valerio-Lepiniec, M, Urvoas, A, Chevrel, A, Graille, M, Fourati-Kammoun, Z, Desmadril, M, van Tilbeurgh, H, Minard, P. Deposit date: 2013-03-27 Release date: 2013-09-25 Last modified: 2023-09-20 Method: X-RAY DIFFRACTION (1.9 Å) Cite: Selection of Specific Protein Binders for Pre-Defined Targets from an Optimized Library of Artificial Helicoidal Repeat Proteins (alphaRep). Plos One, 8, 2013
5CHB	Crystal structure of nvPizza2-S16H58 coordinating a CdCl2 nanocrystal Descriptor: CADMIUM ION, CHLORIDE ION, SULFATE ION, ... Authors: Voet, A.R.D, Noguchi, H, Addy, C, Zhang, K.Y.J, Tame, J.R.H. Deposit date: 2015-07-10 Release date: 2015-07-22 Last modified: 2023-11-08 Method: X-RAY DIFFRACTION (1.55 Å) Cite: Biomineralization of a Cadmium Chloride Nanocrystal by a Designed Symmetrical Protein Angew.Chem.Int.Ed.Engl., 54, 2015
7JRH	X-ray crystal structure of a cyclic peptide containing medin(19-25) and medin(31-37) Descriptor: CALCIUM ION, Cyclic peptide ASP-GLN-TRP-MLE-GLN-VAL-ASP-ORD-GLU-VAL-THR-GLY-ILE-ILE-THR-ORD Authors: Wierzbicki, M, Howitz, W.J, Nowick, J.S. Deposit date: 2020-08-12 Release date: 2020-09-09 Last modified: 2020-09-30 Method: X-RAY DIFFRACTION (1.32 Å) Cite: Interpenetrating Cubes in the X-ray Crystallographic Structure of a Peptide Derived from Medin 19-36 . J.Am.Chem.Soc., 142, 2020
5AWL	CRYSTAL STRUCTURE OF A MUTANT OF CHIGNOLIN, CLN025 Descriptor: A mutant of Chignolin, CLN025 Authors: Akiba, T, Ishimura, M, Odahara, T, Harata, K, Honda, S. Deposit date: 2015-07-05 Release date: 2015-08-12 Last modified: 2024-03-20 Method: X-RAY DIFFRACTION (1.11 Å) Cite: Crystal structure of a ten-amino acid protein J.Am.Chem.Soc., 130, 2008

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