PDB: 537 resultsInfo pagesStatus searchChemie searchBIRD

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3N4N	Insights into the stabilizing contributions of a bicyclic cytosine analogue: crystal structures of DNA duplexes containing 7,8-dihydropyrido[2,3-d]pyrimidin-2-one Descriptor: 5'-D(*CP*GP*CP*GP*AP*A)-3', 5'-D(P*TP*TP*(B7C)P*GP*CP*G)-3' Authors: Takenaka, A, Juan, E.C.M, Shimizu, S. Deposit date: 2010-05-22 Release date: 2010-08-11 Last modified: 2023-11-01 Method: X-RAY DIFFRACTION (1.92 Å) Cite: Insights into the DNA stabilizing contributions of a bicyclic cytosine analogue: crystal structures of DNA duplexes containing 7,8-dihydropyrido [2,3-d]pyrimidin-2-one. Nucleic Acids Res., 2010
4ZKK	The novel double-fold structure of d(GCATGCATGC) Descriptor: COBALT (II) ION, DNA (5'-D(*GP*CP*AP*TP*GP*CP*AP*TP*GP*C)-3') Authors: Thirugnanasambandam, A, Karthik, S, Mandal, P.K, Gautham, N. Deposit date: 2015-04-30 Release date: 2015-10-14 Last modified: 2024-03-20 Method: X-RAY DIFFRACTION (1.801 Å) Cite: The novel double-folded structure of d(GCATGCATGC): a possible model for triplet-repeat sequences Acta Crystallogr.,Sect.D, 71, 2015
2WC2	Nmr structure of catabolite activator protein in the unliganded state Descriptor: CATABOLITE GENE ACTIVATOR Authors: Popovych, N, Tzeng, S.R, Kalodimos, C.G. Deposit date: 2009-03-06 Release date: 2009-04-21 Last modified: 2024-05-15 Method: SOLUTION NMR Cite: Structural Basis for Camp-Mediated Allosteric Control of the Catabolite Activator Protein. Proc.Natl.Acad.Sci.USA, 106, 2009
3FL6	Influence of the incorporation of a cyclohexenyl nucleic acid (CeNA) residue onto the sequence d(GCGTGCG)/d(CGCACGC) Descriptor: 5'-D(*CP*GP*CP*AP*CP*GP*C)-3', 5'-D(*GP*CP*GP*(XTR)P*GP*CP*G)-3', COBALT HEXAMMINE(III) Authors: Robeyns, K, Herdewijn, P, Van Meervelt, L. Deposit date: 2008-12-18 Release date: 2009-12-29 Last modified: 2024-02-21 Method: X-RAY DIFFRACTION (1.17 Å) Cite: Direct observation of two cyclohexenyl (CeNA) ring conformations in duplex DNA. Artif DNA PNA XNA, 1, 2010
8TVP	Cryo-EM structure of CPD-stalled Pol II in complex with Rad26 (open state) Descriptor: DNA (NTS), DNA (TS), DNA repair and recombination protein RAD26, ... Authors: Sarsam, R.D, Lahiri, I, Leschziner, A.E. Deposit date: 2023-08-18 Release date: 2024-01-24 Method: ELECTRON MICROSCOPY (3.7 Å) Cite: Elf1 promotes Rad26's interaction with lesion-arrested Pol II for transcription-coupled repair. Proc.Natl.Acad.Sci.USA, 121, 2024
8TVY	Cryo-EM structure of CPD lesion containing RNA Polymerase II elongation complex with Rad26 and Elf1 (closed state) Descriptor: DNA (NTS), DNA (TS), DNA-directed RNA polymerase II subunit RPB1, ... Authors: Sarsam, R.D, Lahiri, I, Leschziner, A.E. Deposit date: 2023-08-18 Release date: 2024-01-24 Last modified: 2024-10-23 Method: ELECTRON MICROSCOPY (3.1 Å) Cite: Elf1 promotes Rad26's interaction with lesion-arrested Pol II for transcription-coupled repair. Proc.Natl.Acad.Sci.USA, 121, 2024
8TVQ	Cryo-EM structure of CPD stalled 10-subunit Pol II in complex with Rad26 Descriptor: DNA (NTS), DNA (TS), DNA repair and recombination protein RAD26, ... Authors: Sarsam, R.D, Lahiri, I, Leschziner, A.E. Deposit date: 2023-08-18 Release date: 2024-01-24 Last modified: 2024-10-16 Method: ELECTRON MICROSCOPY (4.6 Å) Cite: Elf1 promotes Rad26's interaction with lesion-arrested Pol II for transcription-coupled repair. Proc.Natl.Acad.Sci.USA, 121, 2024
8TVW	Cryo-EM structure of CPD-stalled Pol II (conformation 1) Descriptor: DNA (NTS), DNA (TS), DNA-directed RNA polymerase II subunit RPB1, ... Authors: Sarsam, R.D, Lahiri, I, Leschziner, A.E. Deposit date: 2023-08-18 Release date: 2024-01-24 Last modified: 2024-10-09 Method: ELECTRON MICROSCOPY (3.6 Å) Cite: Elf1 promotes Rad26's interaction with lesion-arrested Pol II for transcription-coupled repair. Proc.Natl.Acad.Sci.USA, 121, 2024
8TVX	Cryo-EM structure of CPD-stalled Pol II (Conformation 2) Descriptor: DNA (NTS), DNA (TS), DNA-directed RNA polymerase II subunit RPB1, ... Authors: Sarsam, R.D, Lahiri, I, Leschziner, A.E. Deposit date: 2023-08-18 Release date: 2024-01-24 Method: ELECTRON MICROSCOPY (3.7 Å) Cite: Elf1 promotes Rad26's interaction with lesion-arrested Pol II for transcription-coupled repair. Proc.Natl.Acad.Sci.USA, 121, 2024
8TUG	Cryo-EM structure of CPD-stalled Pol II in complex with Rad26 (engaged state) Descriptor: DNA (NTS), DNA (TS), DNA repair and recombination protein RAD26, ... Authors: Sarsam, R.D, Lahiri, I, Leschziner, A.E. Deposit date: 2023-08-16 Release date: 2024-01-24 Method: ELECTRON MICROSCOPY (3.5 Å) Cite: Elf1 promotes Rad26's interaction with lesion-arrested Pol II for transcription-coupled repair. Proc.Natl.Acad.Sci.USA, 121, 2024
2JXH	Solution Structure of DNA binding domain of Proline Utilization A (PutA) for Psuedomonas putida Descriptor: Proline dehydrogenase Authors: Halouska, S, Zhou, Y, Becker, D, Powers, R. Deposit date: 2007-11-19 Release date: 2008-10-21 Last modified: 2024-05-29 Method: SOLUTION NMR Cite: Solution structure of the Pseudomonas putida protein PpPutA45 and its DNA complex Proteins, 75, 2008
2JXG	Solution Structure of the DNA Binding domain of Proline Utilization A (PutA) Descriptor: Proline dehydrogenase Authors: Halouska, S, Zhou, Y, Becker, D, Powers, R. Deposit date: 2007-11-19 Release date: 2008-02-19 Last modified: 2024-05-29 Method: SOLUTION NMR Cite: Solution structure of the Pseudomonas putida protein PpPutA45 and its DNA complex Proteins, 75, 2008
3Q61	3'-Fluoro Hexitol Nucleic Acid DNA Structure Descriptor: DNA (5'-D(*GP*CP*GP*TP*AP*(F3H)P*AP*CP*GP*C)-3') Authors: Seth, P.R, Allerson, C.R, Prakash, T.P, Siwkowski, A, Berdeja, A, Yu, J, Pallan, P.S, Watt, A.T, Gaus, H, Bhat, B, Egli, M, Swayze, E.E. Deposit date: 2010-12-30 Release date: 2012-01-18 Last modified: 2023-09-13 Method: X-RAY DIFFRACTION (1.56 Å) Cite: Synthesis, improved antisense activity and structural rationale for the divergent RNA affinities of 3'-fluoro hexitol nucleic acid (FHNA and Ara-FHNA) modified oligonucleotides. J.Am.Chem.Soc., 133, 2011
2GZW	Crystal structure of the E.coli CRP-cAMP complex Descriptor: ADENOSINE-3',5'-CYCLIC-MONOPHOSPHATE, Catabolite gene activator Authors: Kumarevel, T.S, Tanaka, T, Shinkai, A, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI) Deposit date: 2006-05-12 Release date: 2007-05-15 Last modified: 2023-10-25 Method: X-RAY DIFFRACTION (2.21 Å) Cite: Crystal structure of activated CRP protein from E coli To be Published
6PNK	Crystal structure of the G-quadruplex formed by (GGGTT)3GGG in complex with N-methylmesoporphryin IX Descriptor: DNA (5'-D(P*GP*GP*GP*TP*TP*GP*GP*GP*TP*TP*GP*GP*GP*TP*TP*GP*GP*G)-3'), FORMIC ACID, N-METHYLMESOPORPHYRIN, ... Authors: Yatsunyk, L.A, Lin, L.Y. Deposit date: 2019-07-02 Release date: 2020-07-08 Last modified: 2023-10-11 Method: X-RAY DIFFRACTION (2.39 Å) Cite: Biophysical and X-ray structural studies of the (GGGTT)3GGG G-quadruplex in complex with N-methyl mesoporphyrin IX. Plos One, 15, 2020
7DFY	Novel motif for left-handed G-quadruplex formation Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, 2xMotif2, POTASSIUM ION, ... Authors: Das, P, Winnerdy, F.R, Maity, A, Mechulam, Y, Phan, A.T. Deposit date: 2020-11-10 Release date: 2021-09-01 Last modified: 2023-11-29 Method: X-RAY DIFFRACTION (1.69 Å) Cite: A novel minimal motif for left-handed G-quadruplex formation. Chem.Commun.(Camb.), 57, 2021
6OD5	Human TCF4 C-terminal bHLH domain in Complex with 12-bp Oligonucleotide Containing E-box Sequence with 5-carboxylcytosines Descriptor: 1,2-ETHANEDIOL, CHLORIDE ION, DNA (5'-D(*AP*(1CC)P*GP*CP*AP*CP*GP*TP*GP*(1CC)P*G)-3'), ... Authors: Horton, J.R, Cheng, X, Yang, J. Deposit date: 2019-03-25 Release date: 2019-05-29 Last modified: 2023-10-11 Method: X-RAY DIFFRACTION (2.05 Å) Cite: Structural basis for preferential binding of human TCF4 to DNA containing 5-carboxylcytosine. Nucleic Acids Res., 47, 2019
1NGT	The Role of Minor Groove Functional Groups in DNA Hydration Descriptor: 5'-D(*CP*GP*CP*GP*AP*AP*(MTR)P*TP*CP*GP*CP*G)-3', MAGNESIUM ION Authors: Woods, K.K, Lan, T, McLaughlin, L.W, Williams, L.D. Deposit date: 2002-12-17 Release date: 2003-03-04 Last modified: 2024-02-14 Method: X-RAY DIFFRACTION (2.04 Å) Cite: The Role of Minor Groove Functional Groups in DNA Hydration Nucleic Acids Res., 31, 2003
1D6D	SOLUTION DNA STRUCTURE CONTAINING (A-A)-T TRIADS INTERDIGITATED BETWEEN A-T BASE PAIRS AND GGGG TETRADS; NMR, 8 STRUCT. Descriptor: 5'-D(*AP*AP*GP*GP*TP*TP*TP*TP*AP*AP*GP*G)-3' Authors: Kuryavyi, V.V, Kettani, A, Wang, W, Jones, R, Patel, D.J. Deposit date: 1999-10-13 Release date: 2000-01-17 Last modified: 2024-05-22 Method: SOLUTION NMR Cite: A diamond-shaped zipper-like DNA architecture containing triads sandwiched between mismatches and tetrads. J.Mol.Biol., 295, 2000
1X95	Solution structure of the DNA-hexamer ATGCAT complexed with DNA Bis-intercalating Anticancer Drug XR5944 (MLN944) Descriptor: 1-METHYL-9-[12-(9-METHYLPHENAZIN-10-IUM-1-YL)-12-OXO-2,11-DIAZA-5,8-DIAZONIADODEC-1-ANOYL]PHENAZIN-10-IUM, 5'-D(*AP*TP*GP*CP*AP*T)-3' Authors: Dai, J, Punchihewa, C, Mistry, P, Ooi, A.T, Yang, D. Deposit date: 2004-08-19 Release date: 2004-09-28 Last modified: 2024-05-01 Method: SOLUTION NMR Cite: Novel DNA bis-intercalation by MLN944, a potent clinical bisphenazine anticancer drug. J.Biol.Chem., 279, 2004
1VTT	GT Wobble Base-Pairing in Z-DNA at 1.0 Angstrom Atomic Resolution: The Crystal Structure of d(CGCGTG) Descriptor: DNA (5'-D(*CP*GP*CP*GP*TP*G)-3') Authors: Ho, P.S, Frederick, C.A, Quigley, G.J, Van Der Marel, G.A, Van Boom, J.H, Wang, A.H.-J, Rich, A. Deposit date: 1988-08-18 Release date: 2011-07-13 Last modified: 2023-12-27 Method: X-RAY DIFFRACTION (1 Å) Cite: GT Wobble Base-Pairing in Z-DNA at 1.0 Angstrom Atomic Resolution: The Crystal Structure of d(CGCGTG) Embo J., 4, 1985
2V8G	Crystal structure of beta-alanine synthase from Saccharomyces kluyveri in complex with the product beta-alanine Descriptor: BETA-ALANINE, BETA-ALANINE SYNTHASE, BICINE, ... Authors: Lundgren, S, Andersen, B, Piskur, J, Dobritzsch, D. Deposit date: 2007-08-07 Release date: 2007-10-02 Last modified: 2023-12-13 Method: X-RAY DIFFRACTION (2.5 Å) Cite: Crystal Structures of Yeast -Alanine Synthase Complexes Reveal the Mode of Substrate Binding and Large Scale Domain Closure Movements. J.Biol.Chem., 282, 2007
2V8V	Crystal structure of mutant R322A of beta-alanine synthase from Saccharomyces kluyveri Descriptor: 2,3-DIHYDROXY-1,4-DITHIOBUTANE, BETA-ALANINE SYNTHASE, N-(AMINOCARBONYL)-BETA-ALANINE, ... Authors: Lundgren, S, Andersen, B, Piskur, J, Dobritzsch, D. Deposit date: 2007-08-15 Release date: 2007-10-02 Last modified: 2023-12-13 Method: X-RAY DIFFRACTION (2.9 Å) Cite: Crystal Structures of Yeast -Alanine Synthase Complexes Reveal the Mode of Substrate Binding and Large Scale Domain Closure Movements. J.Biol.Chem., 282, 2007
2V8D	Crystal structure of mutant E159A of beta-alanine synthase from Saccharomyces kluyveri Descriptor: BETA-ALANINE SYNTHASE, ZINC ION Authors: Lundgren, S, Andersen, B, Piskur, J, Dobritzsch, D. Deposit date: 2007-08-07 Release date: 2007-10-02 Last modified: 2023-12-13 Method: X-RAY DIFFRACTION (2.3 Å) Cite: Crystal Structures of Yeast -Alanine Synthase Complexes Reveal the Mode of Substrate Binding and Large Scale Domain Closure Movements. J.Biol.Chem., 282, 2007
2V8H	Crystal structure of mutant E159A of beta-alanine synthase from Saccharomyces kluyveri in complex with its substrate N-carbamyl-beta- alanine Descriptor: BETA-ALANINE SYNTHASE, BICINE, N-(AMINOCARBONYL)-BETA-ALANINE, ... Authors: Lundgren, S, Andersen, B, Piskur, J, Dobritzsch, D. Deposit date: 2007-08-08 Release date: 2007-10-02 Last modified: 2023-12-13 Method: X-RAY DIFFRACTION (2 Å) Cite: Crystal Structures of Yeast -Alanine Synthase Complexes Reveal the Mode of Substrate Binding and Large Scale Domain Closure Movements. J.Biol.Chem., 282, 2007

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