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1DPI	STRUCTURE OF LARGE FRAGMENT OF ESCHERICHIA COLI DNA POLYMERASE I COMPLEXED WITH D/TMP Descriptor: DNA POLYMERASE I KLENOW FRAGMENT, ZINC ION Authors: Beese, L, Ollis, D, Steitz, T. Deposit date: 1987-08-11 Release date: 1987-10-16 Last modified: 2024-02-07 Method: X-RAY DIFFRACTION (2.8 Å) Cite: Structure of large fragment of Escherichia coli DNA polymerase I complexed with dTMP. Nature, 313, 1985
7R96	Self-Assembled 3D DNA Hexagonal Tensegrity Triangle Descriptor: DNA (5'-D(*AP*GP*GP*CP*AP*GP*CP*CP*TP*GP*TP*AP*CP*GP*GP*AP*CP*AP*TP*CP*A)-3'), DNA (5'-D(*TP*CP*TP*GP*AP*TP*GP*T)-3'), DNA (5'-D(P*CP*CP*GP*TP*AP*CP*A)-3'), ... Authors: Lu, B, Vecchioni, S, Ohayon, Y.P, Sha, R, Mao, C, Seeman, N.C. Deposit date: 2021-06-28 Release date: 2021-10-20 Last modified: 2023-10-18 Method: X-RAY DIFFRACTION (5.68 Å) Cite: 3D Hexagonal Arrangement of DNA Tensegrity Triangles. Acs Nano, 15, 2021
1D12	STRUCTURAL COMPARISON OF ANTICANCER DRUG-DNA COMPLEXES. ADRIAMYCIN AND DAUNOMYCIN Descriptor: DNA (5'-D(*CP*GP*AP*TP*CP*G)-3'), DOXORUBICIN, SODIUM ION, ... Authors: Frederick, C.A, Williams, L.D, Ughetto, G, Van Der Marel, G.A, Van Boom, J.H, Rich, A, Wang, A.H.-J. Deposit date: 1989-10-20 Release date: 1990-10-15 Last modified: 2024-02-07 Method: X-RAY DIFFRACTION (1.7 Å) Cite: Structural comparison of anticancer drug-DNA complexes: adriamycin and daunomycin. Biochemistry, 29, 1990
167D	THE CRYSTAL STRUCTURE OF C-C-A-T-T-A-A-T-G-G: IMPLICATIONS FOR BENDING OF B-DNA AT T-A STEPS Descriptor: DNA (5'-D(*CP*CP*AP*TP*TP*AP*AP*TP*GP*G)-3') Authors: Goodsell, D.S, Kaczor-Grzeskowiak, M, Dickerson, R.E. Deposit date: 1994-04-04 Release date: 1994-08-31 Last modified: 2024-02-07 Method: X-RAY DIFFRACTION (2.3 Å) Cite: The crystal structure of C-C-A-T-T-A-A-T-G-G. Implications for bending of B-DNA at T-A steps. J.Mol.Biol., 239, 1994
6FQV	2.60A BINARY COMPLEX OF S.AUREUS GYRASE with UNCLEAVED DNA Descriptor: DNA (5'-D(*GP*AP*GP*CP*GP*TP*AP*CP*GP*GP*CP*CP*GP*TP*AP*CP*GP*CP*TP*T)-3'), DNA gyrase subunit A, DNA gyrase subunit B,DNA gyrase subunit B, ... Authors: Bax, B.D, Germe, T, Basque, E, Maxwell, A. Deposit date: 2018-02-14 Release date: 2018-04-04 Last modified: 2024-01-17 Method: X-RAY DIFFRACTION (2.6 Å) Cite: A new class of antibacterials, the imidazopyrazinones, reveal structural transitions involved in DNA gyrase poisoning and mechanisms of resistance. Nucleic Acids Res., 46, 2018
1OSB	Conjugative Relaxase TrwC in complex with OriT Dna. Metal-free structure. Descriptor: Dna oligonucleotide, SULFATE ION, TrwC protein Authors: Guasch, A, Lucas, M, Moncalian, G, Cabezas, M, Perez-Luque, R, Gomis-Ruth, F.X, de la Cruz, F, Coll, M. Deposit date: 2003-03-19 Release date: 2003-11-25 Last modified: 2023-08-16 Method: X-RAY DIFFRACTION (2.65 Å) Cite: Recognition and processing of the origin of transfer DNA by conjugative relaxase TrwC. Nat.Struct.Biol., 10, 2003
209D	Structural, physical and biological characteristics of RNA:DNA binding agent N8-actinomycin D Descriptor: DNA (5'-D(*GP*AP*AP*GP*CP*TP*TP*C)-3'), N8-ACTINOMYCIN D Authors: Shinomiya, M, Chu, W, Carlson, R.G, Weaver, R.F, Takusagawa, F. Deposit date: 1995-05-01 Release date: 1995-10-15 Last modified: 2024-07-10 Method: X-RAY DIFFRACTION (3 Å) Cite: Structural, Physical, and Biological Characteristics of RNA.DNA Binding Agent N8-Actinomycin D. Biochemistry, 34, 1995
279D	CRYSTAL STRUCTURE OF THE SELF-COMPLEMENTARY 5'-PURINE START DECAMER D(GCGCGCGCGC) IN THE Z-DNA CONFORMATION-PART I Descriptor: DNA (5'-D(*GP*CP*GP*CP*GP*CP*GP*CP*GP*C)-3' Authors: Ban, C, Ramakrishnan, B, Sundaralingam, M. Deposit date: 1996-05-21 Release date: 1996-06-27 Last modified: 2024-02-14 Method: X-RAY DIFFRACTION (1.9 Å) Cite: Crystal structure of the self-complementary 5'-purine start decamer d(GCGCGCGCGC) in the Z-DNA conformation. I. Biophys.J., 71, 1996
282D	A CONTINOUS TRANSITION FROM A-DNA TO B-DNA IN THE 1:1 COMPLEX BETWEEN NOGALAMYCIN AND THE HEXAMER DCCCGGG Descriptor: DNA (5'-D(*CP*CP*CP*GP*GP*G)-3'), NOGALAMYCIN Authors: Cruse, W, Saludjian, P, Leroux, Y, Leger, Y, El Manouni, D, Prange, T. Deposit date: 1996-08-26 Release date: 1996-10-23 Last modified: 2024-04-03 Method: X-RAY DIFFRACTION (2.4 Å) Cite: A continuous transition from A-DNA to B-DNA in the 1:1 complex between nogalamycin and the hexamer dCCCGGG. J.Biol.Chem., 271, 1996
1BHM	RESTRICTION ENDONUCLEASE BAMHI COMPLEX WITH DNA Descriptor: DNA (5'-D(*TP*AP*TP*GP*GP*AP*TP*CP*CP*AP*TP*A)-3'), PROTEIN (BAMHI (E.C.3.1.21.4)) Authors: Aggarwal, A.K, Newman, M. Deposit date: 1995-07-12 Release date: 1995-07-12 Last modified: 2024-02-07 Method: X-RAY DIFFRACTION (2.2 Å) Cite: Structure of Bam HI endonuclease bound to DNA: partial folding and unfolding on DNA binding. Science, 269, 1995
1QDF	THE NMR STUDY OF DNA QUADRUPLEX STRUCTURE, APTAMER (15MER) DNA Descriptor: DNA (5'-D(*GP*GP*TP*TP*GP*GP*TP*GP*TP*GP*GP*TP*TP*GP*G)-3') Authors: Marathias, V.M, Wang, K.Y, Kumar, S, Swaminathan, S, Bolton, P.H. Deposit date: 1996-04-11 Release date: 1996-11-08 Last modified: 2024-05-22 Method: SOLUTION NMR Cite: Determination of the number and location of the manganese binding sites of DNA quadruplexes in solution by EPR and NMR in the presence and absence of thrombin. J.Mol.Biol., 260, 1996
1QDI	THE NMR STUDY OF DNA QUADRUPLEX STRUCTURE, (12MER) DNA Descriptor: DNA (5'-D(*GP*GP*GP*GP*TP*TP*TP*TP*GP*GP*GP*G)-3') Authors: Marathias, V.M, Wang, K.Y, Kumar, S, Swaminathan, S, Bolton, P.H. Deposit date: 1996-04-11 Release date: 1996-11-08 Last modified: 2024-05-22 Method: SOLUTION NMR Cite: Determination of the number and location of the manganese binding sites of DNA quadruplexes in solution by EPR and NMR in the presence and absence of thrombin. J.Mol.Biol., 260, 1996
1QDH	THE NMR STUDY OF DNA QUADRUPLEX STRUCTURE, APTAMER (15MER) DNA Descriptor: DNA (5'-D(*GP*GP*TP*TP*GP*GP*TP*GP*TP*GP*GP*TP*TP*GP*G)-3'), MANGANESE (II) ION Authors: Marathias, V.M, Wang, K.Y, Kumar, S, Swaminathan, S, Bolton, P.H. Deposit date: 1996-04-11 Release date: 1996-11-08 Last modified: 2024-05-22 Method: SOLUTION NMR Cite: Determination of the number and location of the manganese binding sites of DNA quadruplexes in solution by EPR and NMR in the presence and absence of thrombin. J.Mol.Biol., 260, 1996
1QDK	THE NMR STUDY OF DNA QUADRUPLEX STRUCTURE, (12MER) DNA Descriptor: DNA (5'-D(*GP*GP*GP*GP*TP*TP*TP*TP*GP*GP*GP*G)-3'), MANGANESE (II) ION Authors: Marathias, V.M, Wang, K.Y, Kumar, S, Swaminathan, S, Bolton, P.H. Deposit date: 1996-04-11 Release date: 1996-11-08 Last modified: 2024-05-22 Method: SOLUTION NMR Cite: Determination of the number and location of the manganese binding sites of DNA quadruplexes in solution by EPR and NMR in the presence and absence of thrombin. J.Mol.Biol., 260, 1996
4AI4	crystal structure of E38Q mutant of 3-methyladenine DNA glycosylase I from Staphylococcus aureus Descriptor: DNA-3-METHYLADENINE GLYCOSYLASE I, SULFATE ION, ZINC ION Authors: Zhu, X, Naismith, J.H. Deposit date: 2012-02-08 Release date: 2012-02-15 Last modified: 2023-12-20 Method: X-RAY DIFFRACTION (1.73 Å) Cite: A Model for 3-Methyladenine Recognition by 3-Methyladenine DNA Glycosylase I (Tag) from Staphylococcus Aureus. Acta Crystallogr.,Sect.F, 68, 2012
5CQK	Crystal Structure of the Cancer Genomic DNA Mutator APOBEC3B Descriptor: DNA dC->dU-editing enzyme APOBEC-3B, GLYCEROL, SODIUM ION, ... Authors: Shi, K, Kurahashi, K, Aihara, H. Deposit date: 2015-07-21 Release date: 2015-10-07 Last modified: 2023-09-27 Method: X-RAY DIFFRACTION (1.88 Å) Cite: Crystal Structure of the DNA Deaminase APOBEC3B Catalytic Domain. J.Biol.Chem., 290, 2015
5CQI	Crystal Structure of the Cancer Genomic DNA Mutator APOBEC3B Descriptor: DNA dC-dU-editing enzyme APOBEC-3B, GLYCEROL, ZINC ION Authors: Shi, K, Kurahashi, K, Aihara, H. Deposit date: 2015-07-21 Release date: 2015-10-07 Last modified: 2024-03-06 Method: X-RAY DIFFRACTION (1.68 Å) Cite: Crystal Structure of the DNA Deaminase APOBEC3B Catalytic Domain. J.Biol.Chem., 290, 2015
5CQD	Crystal Structure of the Cancer Genomic DNA Mutator APOBEC3B Descriptor: DNA dC->dU-editing enzyme APOBEC-3B, GLYCEROL, ZINC ION Authors: Shi, K, Kurahashi, K, Aihara, H. Deposit date: 2015-07-21 Release date: 2015-10-07 Last modified: 2023-09-27 Method: X-RAY DIFFRACTION (2.08 Å) Cite: Crystal Structure of the DNA Deaminase APOBEC3B Catalytic Domain. J.Biol.Chem., 290, 2015
1PNN	PEPTIDE NUCLEIC ACID (PNA) COMPLEXED WITH DNA Descriptor: DNA (5'-D(GP*AP*AP*GP*AP*AP*GP*AP*G)-3'), PNA (NH2-P(*C*T*C*T*T*C*T*T*C-HIS-GLY-SER-SER-GLY-HIS-C*T*T*C*T*T*C*T*C)-COOH) Authors: Betts, L, Veal, J.M. Deposit date: 1995-10-13 Release date: 1996-03-08 Last modified: 2023-11-15 Method: X-RAY DIFFRACTION (2.5 Å) Cite: A Nucleic Acid Triple Helix Formed by a Peptide Nucleic Acid-DNA Complex Science, 270, 1995
5W2C	Structure of human DNA polymerase kappa in complex with Lucidin-derived DNA adduct and incoming dAMPNPP Descriptor: 1,2-ETHANEDIOL, 2'-deoxy-5'-O-[(R)-hydroxy{[(R)-hydroxy(phosphonooxy)phosphoryl]amino}phosphoryl]adenosine, DI(HYDROXYETHYL)ETHER, ... Authors: Jha, V.K, Ling, H. Deposit date: 2017-06-06 Release date: 2017-10-18 Last modified: 2024-03-13 Method: X-RAY DIFFRACTION (2.5 Å) Cite: Mechanism of Error-Free DNA Replication Past Lucidin-Derived DNA Damage by Human DNA Polymerase kappa. Chem. Res. Toxicol., 30, 2017
101D	REFINEMENT OF NETROPSIN BOUND TO DNA: BIAS AND FEEDBACK IN ELECTRON DENSITY MAP INTERPRETATION Descriptor: DNA (5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*(CBR)P*GP*CP*G)-3'), MAGNESIUM ION, NETROPSIN Authors: Goodsell, D.S, Kopka, M.L, Dickerson, R.E. Deposit date: 1994-12-14 Release date: 1995-02-27 Last modified: 2023-11-22 Method: X-RAY DIFFRACTION (2.25 Å) Cite: Refinement of netropsin bound to DNA: bias and feedback in electron density map interpretation. Biochemistry, 34, 1995
7U43	[L334] Self-assembling tensegrity triangle with three turns, three turns and four turns of DNA per axis by extension and linker addition with P1 symmetry Descriptor: DNA (31-MER), DNA (5'-D(*TP*AP*CP*AP*CP*CP*GP*AP*TP*CP*AP*CP*CP*TP*GP*CP*CP*AP*CP*CP*G)-3'), DNA (5'-D(P*AP*CP*TP*GP*AP*TP*GP*TP*GP*GP*TP*AP*GP*G)-3'), ... Authors: Woloszyn, K, Vecchioni, S, Seeman, N.C, Sha, R, Ohayon, Y.P. Deposit date: 2022-02-28 Release date: 2022-09-28 Last modified: 2023-10-25 Method: X-RAY DIFFRACTION (7.55 Å) Cite: Augmented DNA Nanoarchitectures: A Structural Library of 3D Self-Assembling Tensegrity Triangle Variants. Adv Mater, 34, 2022
7U45	[L344] Self-assembling tensegrity triangle with three turns, four turns and four turns of DNA per axis by extension and linker addition with P1 symmetry Descriptor: DNA (31-MER), DNA (5'-D(P*AP*CP*TP*GP*AP*TP*GP*TP*GP*GP*TP*AP*GP*G)-3'), DNA (5'-D(P*AP*GP*GP*CP*AP*GP*CP*CP*TP*GP*TP*AP*CP*GP*GP*AP*CP*AP*TP*CP*A)-3'), ... Authors: Woloszyn, K, Vecchioni, S, Seeman, N.C, Sha, R, Ohayon, Y.P. Deposit date: 2022-02-28 Release date: 2022-09-28 Last modified: 2023-10-25 Method: X-RAY DIFFRACTION (8.05 Å) Cite: Augmented DNA Nanoarchitectures: A Structural Library of 3D Self-Assembling Tensegrity Triangle Variants. Adv Mater, 34, 2022
7U3W	[L224] Self-assembling tensegrity triangle with two turns, two turns and four turns of DNA per axis by linker addition with P1 symmetry Descriptor: DNA (5'-D(*AP*AP*CP*CP*TP*AP*CP*CP*TP*GP*GP*CP*AP*GP*GP*AP*CP*GP*AP*CP*T)-3'), DNA (5'-D(*AP*GP*AP*GP*TP*CP*GP*TP*GP*GP*CP*TP*CP*G)-3'), DNA (5'-D(*CP*AP*CP*GP*AP*GP*CP*CP*TP*GP*AP*TP*CP*GP*GP*AP*CP*AP*AP*GP*A)-3'), ... Authors: Woloszyn, K, Vecchioni, S, Seeman, N.C, Sha, R, Ohayon, Y.P. Deposit date: 2022-02-28 Release date: 2022-09-28 Last modified: 2023-10-25 Method: X-RAY DIFFRACTION (6.33 Å) Cite: Augmented DNA Nanoarchitectures: A Structural Library of 3D Self-Assembling Tensegrity Triangle Variants. Adv Mater, 34, 2022
1S6M	Conjugative Relaxase Trwc In Complex With Orit DNA. Metal-Bound Structure Descriptor: DNA (25-MER), NICKEL (II) ION, TrwC Authors: Guasch, A, Lucas, M, Moncalian, G, Cabezas, M, Perez-Luque, R, Gomis-Ruth, F.X, de la Cruz, F, Coll, M. Deposit date: 2004-01-26 Release date: 2005-06-14 Last modified: 2023-11-15 Method: X-RAY DIFFRACTION (2.28 Å) Cite: Unveiling the molecular mechanism of a conjugative relaxase: The structure of TrwC complexed with a 27-mer DNA comprising the recognition hairpin and the cleavage site. J.Mol.Biol., 358, 2006

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