Loading
PDBj
MenuPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDBDonate
RCSB PDBPDBeBMRBAdv. SearchSearch help

5AXV
DownloadVisualize
BU of 5axv by Molmil
Crystal Structure of Cypovirus Polyhedra R13K Mutant
Descriptor: 1,2-ETHANEDIOL, CHLORIDE ION, CYTIDINE-5'-TRIPHOSPHATE, ...
Authors:Abe, S, Ijiri, H, Negishi, H, Yamanaka, H, Sasaki, K, Hirata, K, Mori, H, Ueno, T.
Deposit date:2015-08-01
Release date:2015-11-11
Last modified:2024-11-13
Method:X-RAY DIFFRACTION (2.04 Å)
Cite:Design of Enzyme-Encapsulated Protein Containers by In Vivo Crystal Engineering
Adv. Mater. Weinheim, 27, 2015
6GLQ
DownloadVisualize
BU of 6glq by Molmil
Crystal structure of hMTH1 N33G in complex with LW14 in the absence of acetate
Descriptor: 1~{H}-imidazo[4,5-b]pyridin-2-amine, 7,8-dihydro-8-oxoguanine triphosphatase, SULFATE ION
Authors:Eberle, S.A, Wiedmer, L, Sledz, P, Caflisch, A.
Deposit date:2018-05-23
Release date:2019-02-20
Last modified:2024-11-20
Method:X-RAY DIFFRACTION (1.601 Å)
Cite:hMTH1 N33G in complex with LW14.
To Be Published
5KJW
DownloadVisualize
BU of 5kjw by Molmil
Crystal structure of Coleus blumei HCT in complex with 3-hydroxyacetophenone
Descriptor: 1-(3-hydroxyphenyl)ethanone, Hydroxycinnamoyl transferase
Authors:Levsh, O, Chiang, Y.C, Tung, C.F, Noel, J.P, Wang, Y, Weng, J.K.
Deposit date:2016-06-20
Release date:2016-11-02
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Dynamic Conformational States Dictate Selectivity toward the Native Substrate in a Substrate-Permissive Acyltransferase.
Biochemistry, 55, 2016
5KTN
DownloadVisualize
BU of 5ktn by Molmil
Crystal structure of Pyrococcus horikoshii quinolinate synthase (NadA) with bound dihydroxyacetone phosphate (DHAP) and Fe4S4 cluster
Descriptor: 1,3-DIHYDROXYACETONEPHOSPHATE, AMMONIUM ION, CHLORIDE ION, ...
Authors:Fenwick, M.K, Ealick, S.E.
Deposit date:2016-07-12
Release date:2016-07-27
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (1.34 Å)
Cite:Crystal Structures of the Iron-Sulfur Cluster-Dependent Quinolinate Synthase in Complex with Dihydroxyacetone Phosphate, Iminoaspartate Analogues, and Quinolinate.
Biochemistry, 55, 2016
5P9A
DownloadVisualize
BU of 5p9a by Molmil
rat catechol O-methyltransferase in complex with N-[2-[2-(6-aminopurin-9-yl)ethoxy]ethyl]-5-(4-fluorophenyl)-2,3-dihydroxybenzamide at 1.91A
Descriptor: (4S,5S)-1,2-DITHIANE-4,5-DIOL, Catechol O-methyltransferase, MAGNESIUM ION, ...
Authors:Ehler, A, Lerner, C, Rudolph, M.G.
Deposit date:2016-08-30
Release date:2017-08-30
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (1.91 Å)
Cite:Crystal Structure of a COMT complex
To be published
5KLG
DownloadVisualize
BU of 5klg by Molmil
Structure of CavAb(W195Y) in complex with Br-dihydropyridine derivative UK-59811
Descriptor: 1,2-DIMYRISTOYL-RAC-GLYCERO-3-PHOSPHOCHOLINE, CALCIUM ION, Ion transport protein, ...
Authors:Tang, L, Gamal EL-Din, T.M, Swanson, T.M, Pryde, D.C, Scheuer, T, Zheng, N, Catterall, W.A.
Deposit date:2016-06-24
Release date:2016-08-31
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (3.3 Å)
Cite:Structural basis for inhibition of a voltage-gated Ca(2+) channel by Ca(2+) antagonist drugs.
Nature, 537, 2016
6W2O
DownloadVisualize
BU of 6w2o by Molmil
Crystal structure of uroporphyrinogen III decarboxylate (hemE) from Stenotrophomonas maltophilia
Descriptor: 1,2-ETHANEDIOL, CHLORIDE ION, SULFATE ION, ...
Authors:Seattle Structural Genomics Center for Infectious Disease (SSGCID)
Deposit date:2020-03-06
Release date:2020-04-22
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.55 Å)
Cite:Crystal structure of uroporphyrinogen III decarboxylate (hemE) from Stenotrophomonas maltophilia
To Be Published
6CQQ
DownloadVisualize
BU of 6cqq by Molmil
Crystal structure of F24 TCR -DR15-RQ13 peptide complex
Descriptor: 1,2-ETHANEDIOL, 2-acetamido-2-deoxy-beta-D-glucopyranose, F24 alpha chain, ...
Authors:Farenc, C, Gras, S, Rossjohn, J.
Deposit date:2018-03-16
Release date:2018-06-06
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:CD4+T cell-mediated HLA class II cross-restriction in HIV controllers.
Sci Immunol, 3, 2018
6HM2
DownloadVisualize
BU of 6hm2 by Molmil
Structure in P1 form of the PBP AgtB in complex with agropinic acid from A.tumefacien R10
Descriptor: 1,2-ETHANEDIOL, Agropine permease, SODIUM ION, ...
Authors:Morera, S, Marty, L, Vigouroux, A.
Deposit date:2018-09-12
Release date:2018-12-26
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.74 Å)
Cite:Structural basis for two efficient modes of agropinic acid opine import into the bacterial pathogenAgrobacterium tumefaciens.
Biochem. J., 476, 2019
6HNI
DownloadVisualize
BU of 6hni by Molmil
The ligand-bound, closed structure of CD0873, a substrate binding protein with adhesive properties from Clostridium difficile.
Descriptor: 1,2-ETHANEDIOL, ABC-type transport system, sugar-family extracellular solute-binding protein, ...
Authors:Bradshaw, W.J, Kovacs-Simon, A, Harmer, N.J, Michell, S.L, Acharya, K.R.
Deposit date:2018-09-15
Release date:2019-08-28
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.35 Å)
Cite:Molecular features of lipoprotein CD0873: A potential vaccine against the human pathogenClostridioides difficile.
J.Biol.Chem., 294, 2019
6VLE
DownloadVisualize
BU of 6vle by Molmil
Crystal structure of human alpha 1,6-fucosyltransferase, FUT8 in its Apo-form
Descriptor: Alpha-(1,6)-fucosyltransferase, SULFATE ION
Authors:Jarva, M.A, Dramicanin, M, Lingford, J.P, Mao, R, John, A, Goddard-Borger, E.D.
Deposit date:2020-01-23
Release date:2020-02-26
Last modified:2024-11-20
Method:X-RAY DIFFRACTION (2.28 Å)
Cite:Structural basis of substrate recognition and catalysis by fucosyltransferase 8.
J.Biol.Chem., 295, 2020
6W39
DownloadVisualize
BU of 6w39 by Molmil
Structure of unphosphorylated IRE1 in complex with G-1749
Descriptor: Serine/threonine-protein kinase/endoribonuclease IRE1, ethyl ~{N}-[6-methyl-5-[3-[2-[[(3~{S})-piperidin-3-yl]amino]pyrimidin-4-yl]pyridin-2-yl]oxy-naphthalen-1-yl]carbamate
Authors:Ferri, E, Wang, W, Joachim, R, Mortara, K.
Deposit date:2020-03-09
Release date:2020-12-09
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.736 Å)
Cite:Activation of the IRE1 RNase through remodeling of the kinase front pocket by ATP-competitive ligands.
Nat Commun, 11, 2020
5OW8
DownloadVisualize
BU of 5ow8 by Molmil
Indole-2 carboxamides as selective secreted phospholipase A2 type X (sPLA2-X) inhibitors
Descriptor: 1-[3-(trifluoromethyl)phenyl]indole-2-carboxamide, CALCIUM ION, CHLORIDE ION, ...
Authors:Sandmark, J.S, Roth, R.G, Knerr, L, Bodin, C, Pettersen, D.
Deposit date:2017-08-31
Release date:2018-08-01
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Discovery of a Series of Indole-2 Carboxamides as Selective Secreted Phospholipase A2Type X (sPLA2-X) Inhibitors.
Acs Med.Chem.Lett., 9, 2018
1CAG
DownloadVisualize
BU of 1cag by Molmil
CRYSTAL AND MOLECULAR STRUCTURE OF A COLLAGEN-LIKE PEPTIDE AT 1.9 ANGSTROM RESOLUTION
Descriptor: ACETIC ACID, COLLAGEN-LIKE PEPTIDE
Authors:Bella, J, Eaton, M, Brodsky, B, Berman, H.M.
Deposit date:1994-03-29
Release date:1994-11-01
Last modified:2024-06-05
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Crystal and molecular structure of a collagen-like peptide at 1.9 A resolution.
Science, 266, 1994
6H8Z
DownloadVisualize
BU of 6h8z by Molmil
T16A variant of beta-phosphoglucomutase from Lactococcus lactis in an open conformer complexed with magnesium trifluoride to 1.6 A.
Descriptor: 1,2-ETHANEDIOL, Beta-phosphoglucomutase, MAGNESIUM ION, ...
Authors:Robertson, A.J, Bisson, C, Waltho, J.P.
Deposit date:2018-08-03
Release date:2020-08-26
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Transition state of phospho-enzyme hydrolysis in beta-phosphoglucomutase.
To Be Published
6GLM
DownloadVisualize
BU of 6glm by Molmil
Crystal structure of hMTH1 N33A in complex with LW14 in the absence of acetate
Descriptor: 1~{H}-imidazo[4,5-b]pyridin-2-amine, 7,8-dihydro-8-oxoguanine triphosphatase, SULFATE ION
Authors:Eberle, S.A, Wiedmer, L, Sledz, P, Caflisch, A.
Deposit date:2018-05-23
Release date:2019-02-20
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:hMTH1 N33A in complex with LW14
To Be Published
7Y10
DownloadVisualize
BU of 7y10 by Molmil
Crystal structure of AtSFH5-Sec14 in complex with DPPA
Descriptor: 1,2-DIPALMITOYL-SN-GLYCERO-3-PHOSPHATE, NICKEL (II) ION, Phosphatidylinositol/phosphatidylcholine transfer protein SFH5
Authors:Lu, Y.Q, Wang, X.Q, Luo, Z.P, Wu, J.W.
Deposit date:2022-06-06
Release date:2023-05-31
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Arabidopsis Sec14 proteins (SFH5 and SFH7) mediate interorganelle transport of phosphatidic acid and regulate chloroplast development.
Proc.Natl.Acad.Sci.USA, 120, 2023
5P96
DownloadVisualize
BU of 5p96 by Molmil
rat catechol O-methyltransferase in complex with N-[5-(2-aminopurin-9-yl)pentyl]-5-(4-fluorophenyl)-2,3-dihydroxybenzamide at 1.40A
Descriptor: (4S,5S)-1,2-DITHIANE-4,5-DIOL, 2-[N-CYCLOHEXYLAMINO]ETHANE SULFONIC ACID, CHLORIDE ION, ...
Authors:Ehler, A, Lerner, C, Rudolph, M.G.
Deposit date:2016-08-30
Release date:2017-08-30
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Crystal Structure of a COMT complex
To be published
7W30
DownloadVisualize
BU of 7w30 by Molmil
Tudor domain of SMN in complex with a small molecule
Descriptor: 1,2-dimethylquinolin-4-imine, Survival motor neuron protein, UNKNOWN ATOM OR ION
Authors:Li, W, Arrowsmith, C.H, Bountra, C, Edwards, A.M, Liu, Y, Min, J.
Deposit date:2021-11-24
Release date:2022-10-05
Last modified:2024-10-23
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:A small molecule antagonist of SMN disrupts the interaction between SMN and RNAP II.
Nat Commun, 13, 2022
7YPN
DownloadVisualize
BU of 7ypn by Molmil
Crystal structure of transaminase CC1012 mutant M9 complexed with PLP
Descriptor: 1,2-ETHANEDIOL, Aspartate aminotransferase family protein, DI(HYDROXYETHYL)ETHER, ...
Authors:Yang, L, Wang, H, Wei, D.
Deposit date:2022-08-03
Release date:2023-05-24
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.049 Å)
Cite:Mechanism-Guided Computational Design of omega-Transaminase by Reprograming of High-Energy-Barrier Steps.
Angew.Chem.Int.Ed.Engl., 61, 2022
6GZ8
DownloadVisualize
BU of 6gz8 by Molmil
First GerMN domain of the sporulation protein GerM from Bacillus subtilis
Descriptor: 1,2-ETHANEDIOL, SODIUM ION, Spore germination protein GerM
Authors:Trouve, J, Mohamed, A, Leisico, F, Contreras-Martel, C, Liu, B, Mas, C, Rudner, D.Z, Rodrigues, C.D.A, Morlot, C.
Deposit date:2018-07-03
Release date:2018-10-10
Last modified:2024-05-15
Method:X-RAY DIFFRACTION (1 Å)
Cite:Structural characterization of the sporulation protein GerM from Bacillus subtilis.
J. Struct. Biol., 204, 2018
5A2I
DownloadVisualize
BU of 5a2i by Molmil
Crystal structure of scFv-SM3 in complex with APD-SGalNAc-RP
Descriptor: 1,2-ETHANEDIOL, 2-acetamido-2-deoxy-alpha-D-galactopyranose, ANTIGEN TN, ...
Authors:Martinez-Saez, N, Castro-Lopez, J, Valero-Gonzalez, J, Madariaga, D, Companon, I, Somovilla, V.J, Salvado, M, Asensio, J.L, Jimenez-Barbero, J, Avenoza, A, Busto, J.H, Bernardes, G.J.L, Peregrina, J.M, Hurtado-Guerrero, R, Corzana, F.
Deposit date:2015-05-20
Release date:2015-06-03
Last modified:2024-10-23
Method:X-RAY DIFFRACTION (1.88 Å)
Cite:Deciphering the Non-Equivalence of Serine and Threonine O-Glycosylation Points: Implications for Molecular Recognition of the Tn Antigen by an Anti-Muc1 Antibody.
Angew.Chem.Int.Ed.Engl., 54, 2015
7VKK
DownloadVisualize
BU of 7vkk by Molmil
Crystal structure of D. melanogaster SAMTOR V66W/E67P mutant
Descriptor: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, S-adenosylmethionine sensor upstream of mTORC1, SULFATE ION
Authors:Zhang, T, Ding, J.
Deposit date:2021-09-30
Release date:2022-07-20
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (3.55 Å)
Cite:Molecular mechanism of S -adenosylmethionine sensing by SAMTOR in mTORC1 signaling.
Sci Adv, 8, 2022
5OR8
DownloadVisualize
BU of 5or8 by Molmil
Crystal Structure of BAZ2A bromodomain in complex with 1,3-dimethyl-benzimidazolone compound 1
Descriptor: Bromodomain adjacent to zinc finger domain protein 2A, ~{N}-[(4-fluorophenyl)methyl]-1,3,6-trimethyl-2-oxidanylidene-benzimidazole-5-sulfonamide
Authors:Lolli, G, Dalle Vedove, A, Marchand, J.-R, Caflisch, A.
Deposit date:2017-08-15
Release date:2017-09-13
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Discovery of Inhibitors of Four Bromodomains by Fragment-Anchored Ligand Docking.
J Chem Inf Model, 57, 2017
7ZNZ
DownloadVisualize
BU of 7znz by Molmil
Crystal structure of unliganded form of FucOB, a GH95 family alpha-1,2-fucosidase from Akkermansia muciniphila
Descriptor: FucOB, a GH95 family alpha-1,2-fucosidase, GLYCEROL
Authors:Anso, I, Cifuente, J.O, Trastoy, B, Guerin, M.E.
Deposit date:2022-04-23
Release date:2023-04-19
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Turning universal O into rare Bombay type blood.
Nat Commun, 14, 2023

242842

数据于2025-10-08公开中

PDB statisticsPDBj update infoContact PDBjnumon