PDB: 2718 resultsInfo pagesStatus searchChemie searchBIRD

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7MT2	Mtb 70S initiation complex Descriptor: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ... Authors: Cui, Z, Zhang, J. Deposit date: 2021-05-12 Release date: 2022-02-02 Last modified: 2024-05-29 Method: ELECTRON MICROSCOPY (2.76 Å) Cite: Interplay between an ATP-binding cassette F protein and the ribosome from Mycobacterium tuberculosis. Nat Commun, 13, 2022
7MPJ	Stm1 bound vacant 80S structure isolated from wild-type Descriptor: 18S rRNA, 25S rRNA, 40S ribosomal protein S0-A, ... Authors: Rai, J, Zhao, Y, Li, H. Deposit date: 2021-05-04 Release date: 2022-05-11 Last modified: 2023-12-13 Method: ELECTRON MICROSCOPY (2.7 Å) Cite: CryoEM structures of pseudouridine-free ribosome suggest impacts of chemical modifications on ribosome conformations. Structure, 30, 2022
6QC5	Ovine respiratory complex I FRC closed class 1 Descriptor: 1,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE, 1,2-DIACYL-SN-GLYCERO-3-PHOSPHOETHANOLAMINE, Acyl carrier protein, ... Authors: Letts, J.A, Sazanov, L.A. Deposit date: 2018-12-26 Release date: 2019-08-21 Last modified: 2019-10-02 Method: ELECTRON MICROSCOPY (4.3 Å) Cite: Structures of Respiratory Supercomplex I+III2Reveal Functional and Conformational Crosstalk. Mol.Cell, 75, 2019
7BTB	Cryo-EM structure of pre-60S ribosome from Saccharomyces cerevisiae rpl4delta63-87 strain at 3.22 Angstroms resolution(state R2) Descriptor: 60S ribosomal protein L11-A, 60S ribosomal protein L13-A, 60S ribosomal protein L14-A, ... Authors: Li, Y, Wilson, D.M. Deposit date: 2020-04-01 Release date: 2020-10-28 Method: ELECTRON MICROSCOPY (3.22 Å) Cite: Structural insights into assembly of the ribosomal nascent polypeptide exit tunnel. Nat Commun, 11, 2020
8S1U	YlmH bound to stalled 50S subunits with RqcH and PtRNA Descriptor: 23S rRNA, 50S ribosomal protein L13, 50S ribosomal protein L14, ... Authors: Paternoga, H, Wilson, D.N. Deposit date: 2024-02-16 Release date: 2024-06-12 Last modified: 2024-08-21 Method: ELECTRON MICROSCOPY (3.4 Å) Cite: A role for the S4-domain containing protein YlmH in ribosome-associated quality control in Bacillus subtilis. Nucleic Acids Res., 52, 2024
7NRC	Structure of the yeast Gcn1 bound to a leading stalled 80S ribosome with Rbg2, Gir2, A- and P-tRNA and eIF5A Descriptor: 18S rRNA (1771-MER), 25S rRNA (3184-MER), 40S ribosomal protein S0-A, ... Authors: Pochopien, A.A, Beckert, B, Wilson, D.N. Deposit date: 2021-03-03 Release date: 2021-05-05 Method: ELECTRON MICROSCOPY (3.9 Å) Cite: Structure of Gcn1 bound to stalled and colliding 80S ribosomes. Proc.Natl.Acad.Sci.USA, 118, 2021
7S1G	wild-type Escherichia coli stalled ribosome with antibiotic linezolid Descriptor: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ... Authors: Young, I.D, Stojkovic, V, Tsai, K, Lee, D.J, Fraser, J.S, Galonic Fujimori, D. Deposit date: 2021-09-02 Release date: 2021-11-17 Last modified: 2023-11-15 Method: ELECTRON MICROSCOPY (2.48 Å) Cite: Structural basis for context-specific inhibition of translation by oxazolidinone antibiotics. Nat.Struct.Mol.Biol., 29, 2022
7S1H	Wild-type Escherichia coli ribosome with antibiotic linezolid Descriptor: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ... Authors: Young, I.D, Stojkovic, V, Tsai, K, Lee, D.J, Fraser, J.S, Galonic Fujimori, D. Deposit date: 2021-09-02 Release date: 2021-11-17 Last modified: 2023-11-15 Method: ELECTRON MICROSCOPY (2.35 Å) Cite: Structural basis for context-specific inhibition of translation by oxazolidinone antibiotics. Nat.Struct.Mol.Biol., 29, 2022
7NRD	Structure of the yeast Gcn1 bound to a colliding stalled 80S ribosome with MBF1, A/P-tRNA and P/E-tRNA Descriptor: 25S rRNA (3184-MER), 40S ribosomal protein S0-A, 40S ribosomal protein S1-A, ... Authors: Pochopien, A.A, Beckert, B, Wilson, D.N. Deposit date: 2021-03-03 Release date: 2021-04-14 Method: ELECTRON MICROSCOPY (4.36 Å) Cite: Structure of Gcn1 bound to stalled and colliding 80S ribosomes. Proc.Natl.Acad.Sci.USA, 118, 2021
7O7Z	Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot (classified for pseudoknot) Descriptor: 18S rRNA, 28S rRNA, 40S ribosomal protein S11, ... Authors: Bhatt, P.R, Scaiola, A, Leibundgut, M.A, Atkins, J.F, Ban, N. Deposit date: 2021-04-14 Release date: 2021-06-02 Last modified: 2024-04-24 Method: ELECTRON MICROSCOPY (2.4 Å) Cite: Structural basis of ribosomal frameshifting during translation of the SARS-CoV-2 RNA genome. Science, 372, 2021
8R8M	70S Escherichia coli ribosome with Paenilamicin B2 bound with hybrid A/P- and hybrid P/E-tRNA. Descriptor: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S16, ... Authors: Koller, T.O, Wilson, D.N. Deposit date: 2023-11-29 Release date: 2024-07-24 Method: ELECTRON MICROSCOPY (2.4 Å) Cite: Paenilamicins from the honey bee pathogen Paenibacillus larvae are context-specific translocation inhibitors of protein synthesis. Biorxiv, 2024
7O80	Rabbit 80S ribosome in complex with eRF1 and ABCE1 stalled at the STOP codon in the mutated SARS-CoV-2 slippery site Descriptor: 18S rRNA, 28S rRNA, 40S ribosomal protein S11, ... Authors: Bhatt, P.R, Scaiola, A, Leibundgut, M.A, Atkins, J.F, Ban, N. Deposit date: 2021-04-14 Release date: 2021-06-02 Last modified: 2024-04-24 Method: ELECTRON MICROSCOPY (2.9 Å) Cite: Structural basis of ribosomal frameshifting during translation of the SARS-CoV-2 RNA genome. Science, 372, 2021
7O81	Rabbit 80S ribosome colliding in another ribosome stalled by the SARS-CoV-2 pseudoknot Descriptor: 18S rRNA, 28S rRNA, 40S ribosomal protein S11, ... Authors: Bhatt, P.R, Scaiola, A, Leibundgut, M.A, Atkins, J.F, Ban, N. Deposit date: 2021-04-14 Release date: 2021-06-02 Last modified: 2024-04-24 Method: ELECTRON MICROSCOPY (3.1 Å) Cite: Structural basis of ribosomal frameshifting during translation of the SARS-CoV-2 RNA genome. Science, 372, 2021
7O7Y	Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot (high resolution) Descriptor: 18S rRNA, 28S rRNA, 40S ribosomal protein S11, ... Authors: Bhatt, P.R, Scaiola, A, Leibundgut, M.A, Atkins, J.F, Ban, N. Deposit date: 2021-04-14 Release date: 2021-06-02 Last modified: 2024-04-24 Method: ELECTRON MICROSCOPY (2.2 Å) Cite: Structural basis of ribosomal frameshifting during translation of the SARS-CoV-2 RNA genome. Science, 372, 2021
8Q87	Structure of the G. gallus 80S rotated ribosome in complex with eEF2 and SERBP1 Descriptor: 18S rRNA, 28S rRNA, 40S ribosomal protein S11, ... Authors: Nurullina, L, Jenner, L, Yusupov, M. Deposit date: 2023-08-18 Release date: 2024-08-28 Method: ELECTRON MICROSCOPY (2.4 Å) Cite: Structural insights into inactive ribosome complexes derived from cold-treated chick embryo cells To Be Published
8RGQ	Open Complex I from murine liver Descriptor: 1,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE, 1,2-Distearoyl-sn-glycerophosphoethanolamine, 2'-DEOXYGUANOSINE-5'-TRIPHOSPHATE, ... Authors: Vercellino, I, Sazanov, L.A. Deposit date: 2023-12-14 Release date: 2024-04-24 Last modified: 2024-07-31 Method: ELECTRON MICROSCOPY (3 Å) Cite: SCAF1 drives the compositional diversity of mammalian respirasomes. Nat.Struct.Mol.Biol., 31, 2024
8RGT	Open Complex I from murine brain Descriptor: 1,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE, 1,2-Distearoyl-sn-glycerophosphoethanolamine, 2'-DEOXYGUANOSINE-5'-TRIPHOSPHATE, ... Authors: Vercellino, I, Sazanov, L.A. Deposit date: 2023-12-14 Release date: 2024-04-24 Last modified: 2024-07-31 Method: ELECTRON MICROSCOPY (3.1 Å) Cite: SCAF1 drives the compositional diversity of mammalian respirasomes. Nat.Struct.Mol.Biol., 31, 2024
8RGR	Closed Complex I from murine liver Descriptor: 1,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE, 1,2-Distearoyl-sn-glycerophosphoethanolamine, 2'-DEOXYGUANOSINE-5'-TRIPHOSPHATE, ... Authors: Vercellino, I, Sazanov, L.A. Deposit date: 2023-12-14 Release date: 2024-04-24 Last modified: 2024-07-31 Method: ELECTRON MICROSCOPY (2.9 Å) Cite: SCAF1 drives the compositional diversity of mammalian respirasomes. Nat.Struct.Mol.Biol., 31, 2024
7NWG	Mammalian pre-termination 80S ribosome with Hybrid P/E- and A/P-site tRNA's bound by Blasticidin S. Descriptor: 18S Ribosomal RNA, 28S Ribosomal RNA, 40S ribosomal protein S10, ... Authors: Powers, K.T, Yadav, S.K.N, Bufton, J.C, Schaffitzel, C. Deposit date: 2021-03-16 Release date: 2021-07-07 Last modified: 2023-01-11 Method: ELECTRON MICROSCOPY (3.8 Å) Cite: Blasticidin S inhibits mammalian translation and enhances production of protein encoded by nonsense mRNA. Nucleic Acids Res., 49, 2021
7NWH	Mammalian pre-termination 80S ribosome with eRF1 and eRF3 bound by Blasticidin S. Descriptor: 18S Ribosomal RNA, 28S Ribosomal RNA, 40S ribosomal protein S10, ... Authors: Powers, K.T, Yadav, S.K.N, Bufton, J.C, Schaffitzel, C. Deposit date: 2021-03-16 Release date: 2021-07-07 Last modified: 2023-01-11 Method: ELECTRON MICROSCOPY (4.1 Å) Cite: Blasticidin S inhibits mammalian translation and enhances production of protein encoded by nonsense mRNA. Nucleic Acids Res., 49, 2021
7NWI	Mammalian pre-termination 80S ribosome with Empty-A site bound by Blasticidin S Descriptor: 18S ribosomal RNA, 28S ribosomal RNA+BlaS, 40S ribosomal protein S11, ... Authors: Powers, K.T, Yadav, S.K.N, Bufton, J.C, Schaffitzel, C. Deposit date: 2021-03-16 Release date: 2021-07-07 Last modified: 2023-01-11 Method: ELECTRON MICROSCOPY (3.13 Å) Cite: Blasticidin S inhibits mammalian translation and enhances production of protein encoded by nonsense mRNA. Nucleic Acids Res., 49, 2021
7S1K	Cfr-modified Escherichia coli stalled ribosome with antibiotic radezolid Descriptor: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ... Authors: Tsai, K, Stojkovic, V, Lee, D.J, Young, I.D, Szal, T, Vazquez-Laslop, N, Mankin, A.S, Fraser, J.S, Galonic Fujimori, D. Deposit date: 2021-09-02 Release date: 2022-01-19 Last modified: 2023-11-15 Method: ELECTRON MICROSCOPY (2.42 Å) Cite: Structural basis for context-specific inhibition of translation by oxazolidinone antibiotics. Nat.Struct.Mol.Biol., 29, 2022
7RYF	A. baumannii Ribosome-TP-6076 complex: P-site tRNA 70S Descriptor: (4S,4aS,5aR,12aS)-4-(diethylamino)-3,10,12,12a-tetrahydroxy-1,11-dioxo-8-[(2S)-pyrrolidin-2-yl]-7-(trifluoromethyl)-1,4,4a,5,5a,6,11,12a-octahydrotetracene-2-carboxamide, 16S Ribosomal RNA, 23S ribosomal RNA, ... Authors: Morgan, C.E, Yu, E.W. Deposit date: 2021-08-25 Release date: 2022-02-02 Last modified: 2024-06-05 Method: ELECTRON MICROSCOPY (2.65 Å) Cite: An Analysis of the Novel Fluorocycline TP-6076 Bound to Both the Ribosome and Multidrug Efflux Pump AdeJ from Acinetobacter baumannii. Mbio, 13, 2022
7OBR	RNC-SRP early complex Descriptor: 28S rRNA, 5.8S ribosomal RNA, 5S ribosomal RNA, ... Authors: Jomaa, A, Ban, N. Deposit date: 2021-04-23 Release date: 2021-07-21 Last modified: 2021-07-28 Method: ELECTRON MICROSCOPY (2.8 Å) Cite: Molecular mechanism of cargo recognition and handover by the mammalian signal recognition particle. Cell Rep, 36, 2021
7NZ1	Respiratory complex I from Escherichia coli - focused refinement of cytoplasmic arm Descriptor: CALCIUM ION, FE2/S2 (INORGANIC) CLUSTER, FLAVIN MONONUCLEOTIDE, ... Authors: Kolata, P, Efremov, R.G. Deposit date: 2021-03-23 Release date: 2021-08-18 Method: ELECTRON MICROSCOPY (2.1 Å) Cite: Structure of Escherichia coli respiratory complex I reconstituted into lipid nanodiscs reveals an uncoupled conformation. Elife, 10, 2021

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