PDB: 222415 resultsInfo pagesStatus searchChemie searchBIRD

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4V4W	Structure of a SecM-stalled E. coli ribosome complex obtained by fitting atomic models for RNA and protein components into cryo-EM map EMD-1143 Descriptor: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal subunit protein S10, ... Authors: Mitra, K, Frank, J. Deposit date: 2006-05-09 Release date: 2014-07-09 Last modified: 2024-02-28 Method: ELECTRON MICROSCOPY (15 Å) Cite: Elongation arrest by SecM via a cascade of ribosomal RNA rearrangements Mol.Cell, 22, 2006
3GVK	Crystal structure of endo-neuraminidase NF mutant Descriptor: Endo-N-acetylneuraminidase, N-acetyl-alpha-neuraminic acid-(2-8)-N-acetyl-alpha-neuraminic acid-(2-8)-N-acetyl-beta-neuraminic acid, N-acetyl-alpha-neuraminic acid-(2-8)-N-acetyl-beta-neuraminic acid, ... Authors: Schulz, E.C, Dickmanns, A, Ficner, R. Deposit date: 2009-03-31 Release date: 2010-03-02 Last modified: 2021-10-13 Method: X-RAY DIFFRACTION (1.84 Å) Cite: Structural basis for the recognition and cleavage of polysialic acid by the bacteriophage K1F tailspike protein EndoNF. J.Mol.Biol., 397, 2010
4O3B	Crystal structure of an open/closed glua2 ligand-binding domain dimer at 1.91 A resolution Descriptor: ACETATE ION, CHLORIDE ION, DI(HYDROXYETHYL)ETHER, ... Authors: Krintel, C, de Rabassa, A.C, Frydenvang, K, Gajhede, M, Kastrup, J.S. Deposit date: 2013-12-18 Release date: 2014-04-16 Last modified: 2023-09-20 Method: X-RAY DIFFRACTION (1.906 Å) Cite: L-Asp is a useful tool in the purification of the ionotropic glutamate receptor A2 ligand-binding domain. Febs J., 281, 2014
5VHD	DHX36 with an N-terminal truncation bound to ADP-AlF4 Descriptor: ADENOSINE-5'-DIPHOSPHATE, DEAH (Asp-Glu-Ala-His) box polypeptide 36, TETRAFLUOROALUMINATE ION Authors: Chen, M, Ferre-D'Amare, A. Deposit date: 2017-04-13 Release date: 2018-06-13 Last modified: 2024-04-03 Method: X-RAY DIFFRACTION (2.55 Å) Cite: Structural basis of G-quadruplex unfolding by the DEAH/RHA helicase DHX36. Nature, 558, 2018
1VRO	Selenium-Assisted Nucleic Acid Crystallography: Use of Phosphoroselenoates for MAD Phasing of a DNA Structure Descriptor: 5'-D(*CP*(GMS)P*CP*GP*CP*G)-3', MAGNESIUM ION, SPERMINE Authors: Wilds, C.J, Pattanayek, R, Pan, C, Wawrzak, Z, Egli, M. Deposit date: 2005-04-14 Release date: 2005-04-19 Last modified: 2023-12-27 Method: X-RAY DIFFRACTION (1.1 Å) Cite: Selenium-Assisted Nucleic Acid Crystallography: Use of Phosphoroselenoates for MAD Phasing of a DNA Structure J.Am.Chem.Soc., 124, 2002
4O3A	Crystal structure of the glua2 ligand-binding domain in complex with L-aspartate at 1.80 a resolution Descriptor: ACETATE ION, ASPARTIC ACID, CHLORIDE ION, ... Authors: Krintel, C, Frydenvang, F, Gajhede, M, Kastrup, J.S. Deposit date: 2013-12-18 Release date: 2014-04-16 Last modified: 2023-09-20 Method: X-RAY DIFFRACTION (1.8 Å) Cite: L-Asp is a useful tool in the purification of the ionotropic glutamate receptor A2 ligand-binding domain. Febs J., 281, 2014
1VRP	The 2.1 Structure of T. californica Creatine Kinase Complexed with the Transition-State Analogue Complex, ADP-Mg 2+ /NO3-/Creatine Descriptor: (DIAMINOMETHYL-METHYL-AMINO)-ACETIC ACID, ADENOSINE-5'-DIPHOSPHATE, Creatine Kinase, ... Authors: Lahiri, S.D, Wang, P.F, Babbitt, P.C, McLeish, M.J, Kenyon, G.L, Allen, K.N. Deposit date: 2005-04-25 Release date: 2005-05-03 Last modified: 2023-08-23 Method: X-RAY DIFFRACTION (2.1 Å) Cite: The 2.1 A Structure of Torpedo californica Creatine Kinase Complexed with the ADP-Mg(2+)-NO3(-)-Creatine Transition-State Analogue Complex Biochemistry, 41, 2002
1VRZ	Helix turn helix motif Descriptor: ACETATE ION, DE NOVO DESIGNED 21 RESIDUE PEPTIDE Authors: Rudresh, Ramakumar, S, Ramagopal, U.A, Inai, Y, Sahal, D. Deposit date: 2005-10-14 Release date: 2005-11-01 Last modified: 2023-12-27 Method: X-RAY DIFFRACTION (1.05 Å) Cite: De Novo Design and Characterization of a Helical Hairpin Eicosapeptide; Emergence of an Anion Receptor in the Linker Region. Structure, 12, 2004
4O35	Crystal structure of carbomonoxy murine neuroglobin mutant F106W Descriptor: 1,4-DIETHYLENE DIOXIDE, CARBON MONOXIDE, Neuroglobin, ... Authors: Avella, G, Savino, C, Vallone, B. Deposit date: 2013-12-18 Release date: 2014-06-18 Last modified: 2024-02-28 Method: X-RAY DIFFRACTION (1.8 Å) Cite: Engineering the internal cavity of neuroglobin demonstrates the role of the haem-sliding mechanism. Acta Crystallogr.,Sect.D, 70, 2014
2XCX	Crystal structure of the apoform of the D52N variant of cytosolic 5'- nucleotidase II Descriptor: CYTOSOLIC PURINE 5'-NUCLEOTIDASE, GLYCEROL Authors: Wallden, K, Nordlund, P. Deposit date: 2010-04-26 Release date: 2011-03-16 Last modified: 2023-12-20 Method: X-RAY DIFFRACTION (2.3 Å) Cite: Structural Basis for the Allosteric Regulation and Substrate Recognition of Human Cytosolic 5'-Nucleotidase II J.Mol.Biol., 408, 2011
6Q92	Crystal structure of human Arginase-1 at pH 7.0 in complex with ABH Descriptor: 2(S)-AMINO-6-BORONOHEXANOIC ACID, Arginase-1, MANGANESE (II) ION, ... Authors: Grobben, Y, Uitdehaag, J.C.M, Zaman, G.J.R. Deposit date: 2018-12-17 Release date: 2019-12-11 Last modified: 2024-01-24 Method: X-RAY DIFFRACTION (1.5 Å) Cite: Structural insights into human Arginase-1 pH dependence and its inhibition by the small molecule inhibitor CB-1158. J Struct Biol X, 4, 2020
1WBF	WINGED BEAN LECTIN, SACCHARIDE FREE FORM Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, CALCIUM ION, MANGANESE (II) ION, ... Authors: Manoj, N, Srinivas, V.R, Suguna, K. Deposit date: 1998-12-16 Release date: 1999-12-22 Last modified: 2023-08-23 Method: X-RAY DIFFRACTION (2.3 Å) Cite: Structure of basic winged-bean lectin and a comparison with its saccharide-bound form. Acta Crystallogr.,Sect.D, 55, 1999
1W8N	Contribution of the Active Site Aspartic Acid to Catalysis in the Bacterial Neuraminidase from Micromonospora viridifaciens. Descriptor: 2-DEOXY-2,3-DEHYDRO-N-ACETYL-NEURAMINIC ACID, BACTERIAL SIALIDASE, SODIUM ION, ... Authors: Newstead, S, Watson, J.N, Dookhun, V, Bennet, A.J, Taylor, G. Deposit date: 2004-09-24 Release date: 2004-09-30 Last modified: 2023-12-13 Method: X-RAY DIFFRACTION (2.1 Å) Cite: Contribution of the Active Site Aspartic Acid to Catalysis in the Bacterial Neuraminidase from Micromonospora Viridifaciens FEBS Lett., 577, 2004
3H6Z	Crystal Structure of the Four MBT Repeats of Drosophila melanogaster Sfmbt in Complex with Peptide RHR (me)K VLR Descriptor: 'HR(MLZ)VLR, Polycomb protein Sfmbt, beta-D-fructofuranose-(2-1)-alpha-D-glucopyranose Authors: Grimm, C, Mueller, C.W. Deposit date: 2009-04-24 Release date: 2009-06-16 Last modified: 2021-11-10 Method: X-RAY DIFFRACTION (2.8 Å) Cite: Molecular recognition of histone lysine methylation by the Polycomb group repressor dSfmbt Embo J., 28, 2009
2XXB	Penta-mutant of Thermus thermophilus lactate dehydrogenase, complex with AMP Descriptor: ADENOSINE MONOPHOSPHATE, L-LACTATE DEHYDROGENASE Authors: Diop, F, Coquelle, N, Vellieux, F.M.D. Deposit date: 2010-11-09 Release date: 2010-11-17 Last modified: 2023-12-20 Method: X-RAY DIFFRACTION (2.15 Å) Cite: Lactate Dehydrogenase from T. Thermophilus, Penta-Mutant (Complex with AMP) To be Published
6ZJT	Cold-adapted beta-D-galactosidase from Arthrobacter sp. 32cB mutant E441Q in complex with lactulose Descriptor: ACETATE ION, Beta-galactosidase, SODIUM ION, ... Authors: Rutkiewicz, M, Bujacz, A, Bujacz, G. Deposit date: 2020-06-29 Release date: 2020-08-05 Last modified: 2024-01-31 Method: X-RAY DIFFRACTION (1.97 Å) Cite: Mapping the Transglycosylation Relevant Sites of Cold-Adapted beta-d-Galactosidase fromArthrobactersp. 32cB. Int J Mol Sci, 21, 2020
4V4V	Structure of a pre-translocational E. coli ribosome obtained by fitting atomic models for RNA and protein components into cryo-EM map EMD-1056 Descriptor: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal subunit protein S10, ... Authors: Mitra, K, Frank, J. Deposit date: 2006-05-09 Release date: 2014-07-09 Last modified: 2024-02-28 Method: ELECTRON MICROSCOPY (15 Å) Cite: Elongation arrest by SecM via a cascade of ribosomal RNA rearrangements Mol.Cell, 22, 2006
7M1H	Crystal structure of LC/A-JPU-C10-JPU-D12-JPU-B8-JPU-G3-ciA-F12-ciA-D12 Descriptor: Botulinum neurotoxin A light chain, JPU-B8, JPU-C10, ... Authors: Lam, K, Jin, R. Deposit date: 2021-03-13 Release date: 2021-12-22 Last modified: 2023-10-18 Method: X-RAY DIFFRACTION (2.78 Å) Cite: Probing the structure and function of the protease domain of botulinum neurotoxins using single-domain antibodies. Plos Pathog., 18, 2022
5VHC	DHX36 with an N-terminal truncation bound to ADP-BeF3 Descriptor: ADENOSINE-5'-DIPHOSPHATE, BERYLLIUM TRIFLUORIDE ION, DEAH (Asp-Glu-Ala-His) box polypeptide 36, ... Authors: Chen, M, Ferre-D'Amare, A. Deposit date: 2017-04-12 Release date: 2018-06-13 Last modified: 2024-04-03 Method: X-RAY DIFFRACTION (2.49 Å) Cite: Structural basis of G-quadruplex unfolding by the DEAH/RHA helicase DHX36. Nature, 558, 2018
7LZP	LC/A-JPU-B9-JPU-A11-JPU-G11 Descriptor: Botulinum neurotoxin A light chain, JPU-A11, JPU-B9, ... Authors: Lam, K, Jin, R. Deposit date: 2021-03-10 Release date: 2021-12-22 Last modified: 2023-10-18 Method: X-RAY DIFFRACTION (2.86 Å) Cite: Probing the structure and function of the protease domain of botulinum neurotoxins using single-domain antibodies. Plos Pathog., 18, 2022
2XJD	Crystal structure of the D52N variant of cytosolic 5'-nucleotidase II in complex with inorganic phosphate and deoxyadenosine triphosphate Descriptor: ADENOSINE-5'-TRIPHOSPHATE, CYTOSOLIC PURINE 5'-NUCLEOTIDASE, GLYCEROL, ... Authors: Wallden, K, Nordlund, P. Deposit date: 2010-07-04 Release date: 2011-04-27 Last modified: 2023-12-20 Method: X-RAY DIFFRACTION (2 Å) Cite: Structural Basis for the Allosteric Regulation and Substrate Recognition of Human Cytosolic 5'-Nucleotidase II. J.Mol.Biol., 408, 2011
5VK2	Structural basis for antibody-mediated neutralization of Lassa virus Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose, ... Authors: Hastie, K.M, Zandonatti, M.A, Kleinfelter, L.M, Rowland, M.L, Rowland, M.M, Chandra, K, Branco, L.M, Robinson, J.E, Garry, R.F, Saphire, E.O. Deposit date: 2017-04-20 Release date: 2017-05-31 Last modified: 2023-10-04 Method: X-RAY DIFFRACTION (3.201 Å) Cite: Structural basis for antibody-mediated neutralization of Lassa virus. Science, 356, 2017
3GXD	Crystal structure of Apo acid-beta-glucosidase pH 4.5 Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Glucosylceramidase, PHOSPHATE ION Authors: Lieberman, R.L. Deposit date: 2009-04-02 Release date: 2009-05-05 Last modified: 2023-09-06 Method: X-RAY DIFFRACTION (2.5 Å) Cite: Effects of pH and iminosugar pharmacological chaperones on lysosomal glycosidase structure and stability. Biochemistry, 48, 2009
2FQF	Crystal Structures of E. coli Laccase CueO under different copper binding situations Descriptor: Blue copper oxidase cueO, CITRIC ACID, COPPER (II) ION, ... Authors: Li, X, Wei, Z, Zhang, M, Teng, M, Gong, W. Deposit date: 2006-01-18 Release date: 2007-01-30 Last modified: 2024-03-13 Method: X-RAY DIFFRACTION (2 Å) Cite: Crystal structures of E. coli laccase CueO at different copper concentrations. Biochem.Biophys.Res.Commun., 354, 2007
1M6N	Crystal structure of the SecA translocation ATPase from Bacillus subtilis Descriptor: Preprotein translocase secA, SULFATE ION Authors: Hunt, J.F, Weinkauf, S, Henry, L, Fak, J.J, McNicholas, P, Oliver, D.B, Deisenhofer, J. Deposit date: 2002-07-16 Release date: 2002-09-20 Last modified: 2024-02-14 Method: X-RAY DIFFRACTION (2.7 Å) Cite: Nucleotide Control of Interdomain Interactions in the Conformational Reaction Cycle of SecA Science, 297, 2002

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