2EPN
| N-acetyl-B-D-glucosaminidase (GCNA) from Streptococcus gordonii | Descriptor: | 3AR,5R,6S,7R,7AR-5-HYDROXYMETHYL-2-METHYL-5,6,7,7A-TETRAHYDRO-3AH-PYRANO[3,2-D]THIAZOLE-6,7-DIOL, N-acetyl-beta-D-glucosaminidase | Authors: | Langley, D.B. | Deposit date: | 2007-03-30 | Release date: | 2008-03-11 | Last modified: | 2023-10-25 | Method: | X-RAY DIFFRACTION (1.61 Å) | Cite: | Structure of N-acetyl-beta-D-glucosaminidase (GcnA) from the Endocarditis Pathogen Streptococcus gordonii and its Complex with the Mechanism-based Inhibitor NAG-thiazoline J.Mol.Biol., 377, 2008
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2CSC
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1MYT
| CRYSTAL STRUCTURE TO 1.74 ANGSTROMS RESOLUTION OF METMYOGLOBIN FROM YELLOWFIN TUNA (THUNNUS ALBACARES): AN EXAMPLE OF A MYOGLOBIN LACKING THE D HELIX | Descriptor: | MYOGLOBIN, PROTOPORPHYRIN IX CONTAINING FE | Authors: | Birnbaum, G.I, Evans, S.V, Przybylska, M, Rose, D.R. | Deposit date: | 1991-05-06 | Release date: | 1993-10-31 | Last modified: | 2024-02-14 | Method: | X-RAY DIFFRACTION (1.74 Å) | Cite: | 1.70 A resolution structure of myoglobin from yellowfin tuna. An example of a myoglobin lacking the D helix. Acta Crystallogr.,Sect.D, 50, 1994
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2HK0
| Crystal structure of D-psicose 3-epimerase (DPEase) in the absence of substrate | Descriptor: | D-PSICOSE 3-EPIMERASE | Authors: | Kim, K, Kim, H.J, Oh, D.K, Cha, S.S, Rhee, S. | Deposit date: | 2006-07-03 | Release date: | 2006-08-29 | Last modified: | 2017-10-18 | Method: | X-RAY DIFFRACTION (2 Å) | Cite: | Crystal Structure of d-Psicose 3-epimerase from Agrobacterium tumefaciens and its Complex with True Substrate d-Fructose: A Pivotal Role of Metal in Catalysis, an Active Site for the Non-phosphorylated Substrate, and its Conformational Changes J.Mol.Biol., 361, 2006
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2GMU
| Crystal structure of E coli GDP-4-keto-6-deoxy-D-mannose-3-dehydratase complexed with PLP-glutamate ketimine intermediate | Descriptor: | MAGNESIUM ION, N-({3-HYDROXY-2-METHYL-5-[(PHOSPHONOOXY)METHYL]PYRIDIN-4-YL}METHYL)-D-GLUTAMIC ACID, Putative pyridoxamine 5-phosphate-dependent dehydrase, ... | Authors: | Cook, P.D, Thoden, J.B, Holden, H.M. | Deposit date: | 2006-04-07 | Release date: | 2006-09-05 | Last modified: | 2023-08-30 | Method: | X-RAY DIFFRACTION (1.9 Å) | Cite: | The structure of GDP-4-keto-6-deoxy-D-mannose-3-dehydratase: a unique coenzyme B6-dependent enzyme. Protein Sci., 15, 2006
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6CKG
| D-glycerate 3-kinase from Cryptococcus neoformans var. grubii serotype A (H99 / ATCC 208821 / CBS 10515 / FGSC 9487) | Descriptor: | 1,2-ETHANEDIOL, D-glycerate 3-kinase | Authors: | Horanyi, P.S, Abendroth, J, Lorimer, D.D, Edwards, T.E, Seattle Structural Genomics Center for Infectious Disease (SSGCID) | Deposit date: | 2018-02-28 | Release date: | 2018-04-04 | Last modified: | 2024-03-13 | Method: | X-RAY DIFFRACTION (2 Å) | Cite: | D-glycerate 3-kinase from Cryptococcus neoformans var. grubii serotype A (H99 / ATCC 208821 / CBS 10515 / FGSC 9487) To be Published
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7U9K
| Staphylococcus aureus D-alanine-D-alanine ligase in complex with ATP, D-ala-D-ala, Mg2+ and K+ | Descriptor: | ADENOSINE-5'-DIPHOSPHATE, ADENOSINE-5'-TRIPHOSPHATE, D-alanine--D-alanine ligase, ... | Authors: | Pederick, J.L, Bruning, J.B. | Deposit date: | 2022-03-10 | Release date: | 2023-03-15 | Last modified: | 2024-01-31 | Method: | X-RAY DIFFRACTION (2 Å) | Cite: | Structure-guided design and synthesis of ATP-competitive N-acyl-substituted sulfamide d-alanine-d-alanine ligase inhibitors. Bioorg.Med.Chem., 96, 2023
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6G1F
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5L34
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5C1P
| Crystal structure of ADP and D-alanyl-D-alanine complexed D-alanine-D-alanine ligase(DDL) from Yersinia pestis | Descriptor: | ACETATE ION, ADENOSINE-5'-DIPHOSPHATE, D-ALANINE, ... | Authors: | Tran, H.T, Kang, L.W, Hong, M.K, Ngo, H.P.T. | Deposit date: | 2015-06-15 | Release date: | 2016-03-02 | Last modified: | 2024-03-20 | Method: | X-RAY DIFFRACTION (2.4 Å) | Cite: | Structure of D-alanine-D-alanine ligase from Yersinia pestis: nucleotide phosphate recognition by the serine loop. Acta Crystallogr D Struct Biol, 72, 2016
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7KJN
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4Y4V
| Structure of Helicobacter pylori Csd6 in the D-Ala-bound state | Descriptor: | Conserved hypothetical secreted protein, D-ALANINE, GLYCEROL | Authors: | Kim, H.S, Im, H.N, Yoon, H.J, Suh, S.W. | Deposit date: | 2015-02-11 | Release date: | 2015-09-02 | Last modified: | 2022-03-23 | Method: | X-RAY DIFFRACTION (2.04 Å) | Cite: | The Cell Shape-determining Csd6 Protein from Helicobacter pylori Constitutes a New Family of l,d-Carboxypeptidase J.Biol.Chem., 290, 2015
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4Q3F
| Human D-DT complexed with tartrate | Descriptor: | D-dopachrome decarboxylase, L(+)-TARTARIC ACID | Authors: | Rajasekaran, D, Lolis, E. | Deposit date: | 2014-04-11 | Release date: | 2014-06-04 | Last modified: | 2024-02-28 | Method: | X-RAY DIFFRACTION (1.8 Å) | Cite: | Targeting distinct tautomerase sites of D-DT and MIF with a single molecule for inhibition of neutrophil lung recruitment. Faseb J., 28, 2014
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3L8L
| Gramicidin D complex with sodium iodide | Descriptor: | GRAMICIDIN D, IODIDE ION, METHANOL, ... | Authors: | Olczak, A, Glowka, M.L, Szczesio, M, Bojarska, J, Wawrzak, Z, Duax, W.L. | Deposit date: | 2009-12-31 | Release date: | 2010-07-28 | Last modified: | 2023-11-15 | Method: | X-RAY DIFFRACTION (1.25 Å) | Cite: | The first crystal structure of a gramicidin complex with sodium: high-resolution study of a nonstoichiometric gramicidin D-NaI complex. Acta Crystallogr.,Sect.D, 66, 2010
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2XPC
| Second-generation sulfonamide inhibitors of MurD: Activity optimisation with conformationally rigid analogues of D-glutamic acid | Descriptor: | (1R,3R,4S)-4-[({6-[(4-CYANO-2-FLUOROBENZYL)OXY]NAPHTHALEN-2-YL}SULFONYL)AMINO]CYCLOHEXANE-1,3-DICARBOXYLIC ACID, CHLORIDE ION, DIMETHYL SULFOXIDE, ... | Authors: | Sosic, I, Barreteau, H, Simcic, M, Sink, R, Cesar, J, Golic-Grdadolnik, S, Contreras-Martel, C, Dessen, A, Amoroso, A, Joris, B, Blanot, D, Gobec, S. | Deposit date: | 2010-08-26 | Release date: | 2011-05-18 | Last modified: | 2023-12-20 | Method: | X-RAY DIFFRACTION (1.49 Å) | Cite: | Second-Generation Sulfonamide Inhibitors of D- Glutamic Acid-Adding Enzyme: Activity Optimisation with Conformationally Rigid Analogues of D- Glutamic Acid. Eur.J.Med.Chem, 46, 2011
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4DAA
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1GPD
| STUDIES OF ASYMMETRY IN THE THREE-DIMENSIONAL STRUCTURE OF LOBSTER D-GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE | Descriptor: | D-GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE, NICOTINAMIDE-ADENINE-DINUCLEOTIDE, PHOSPHATE ION | Authors: | Moras, D, Olsen, K.W, Sabesan, M.N, Buehner, M, Ford, G.C, Rossmann, M.G. | Deposit date: | 1975-07-01 | Release date: | 1977-02-17 | Last modified: | 2023-09-27 | Method: | X-RAY DIFFRACTION (2.9 Å) | Cite: | Studies of asymmetry in the three-dimensional structure of lobster D-glyceraldehyde-3-phosphate dehydrogenase. J.Biol.Chem., 250, 1975
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4C5A
| The X-ray crystal structures of D-alanyl-D-alanine ligase in complex ADP and D-cycloserine phosphate | Descriptor: | ADENOSINE-5'-DIPHOSPHATE, D-ALANINE--D-ALANINE LIGASE, GLYCEROL, ... | Authors: | Batson, S, Majce, V, Lloyd, A.J, Rea, D, Fishwick, C.W.G, Simmons, K.J, Fulop, V, Roper, D.I. | Deposit date: | 2013-09-10 | Release date: | 2015-01-21 | Last modified: | 2023-12-20 | Method: | X-RAY DIFFRACTION (1.65 Å) | Cite: | Inhibition of D-Ala:D-Ala ligase through a phosphorylated form of the antibiotic D-cycloserine. Nat Commun, 8, 2017
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4FU0
| Crystal Structure of VanG D-Ala:D-Ser Ligase from Enterococcus faecalis | Descriptor: | ADENOSINE-5'-DIPHOSPHATE, D-alanine--D-alanine ligase 7, SULFATE ION | Authors: | Meziane-Cherif, D, Saul, F.A, Haouz, A, Courvalin, P. | Deposit date: | 2012-06-28 | Release date: | 2012-09-19 | Last modified: | 2023-11-08 | Method: | X-RAY DIFFRACTION (2.35 Å) | Cite: | Structural and functional characterization of VanG D-Ala:D-Ser ligase associated with vancomycin resistance in Enterococcus faecalis J.Biol.Chem., 287, 2012
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1DXY
| STRUCTURE OF D-2-HYDROXYISOCAPROATE DEHYDROGENASE | Descriptor: | 2-OXO-4-METHYLPENTANOIC ACID, D-2-HYDROXYISOCAPROATE DEHYDROGENASE, NICOTINAMIDE-ADENINE-DINUCLEOTIDE, ... | Authors: | Dengler, U, Niefind, K, Kiess, M, Schomburg, D. | Deposit date: | 1996-08-13 | Release date: | 1997-06-16 | Last modified: | 2024-05-22 | Method: | X-RAY DIFFRACTION (1.86 Å) | Cite: | Crystal structure of a ternary complex of D-2-hydroxyisocaproate dehydrogenase from Lactobacillus casei, NAD+ and 2-oxoisocaproate at 1.9 A resolution. J.Mol.Biol., 267, 1997
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1DAA
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1UNO
| Crystal structure of a d,l-alternating peptide | Descriptor: | H-(L-TYR-D-TYR)4-LYS-OH | Authors: | Alexopoulos, E, Kuesel, A, Uson, I, Diederichsen, U, Sheldrick, G.M. | Deposit date: | 2003-09-11 | Release date: | 2004-09-24 | Last modified: | 2019-07-24 | Method: | X-RAY DIFFRACTION (1.4 Å) | Cite: | Solution and Structure of an Alternating D,L-Peptide Acta Crystallogr.,Sect.D, 60, 2004
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1ALZ
| GRAMICIDIN D FROM BACILLUS BREVIS (ETHANOL SOLVATE) | Descriptor: | ETHANOL, ILE-GRAMICIDIN C, VAL-GRAMICIDIN A | Authors: | Burkhart, B.M, Pangborn, W.A, Duax, W.L, Langs, D.A. | Deposit date: | 1997-06-06 | Release date: | 1998-03-04 | Last modified: | 2023-11-15 | Method: | X-RAY DIFFRACTION (0.86 Å) | Cite: | Heterodimer Formation and Crystal Nucleation of Gramicidin D Biophys.J., 75, 1998
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432D
| D(GGCCAATTGG) COMPLEXED WITH DAPI | Descriptor: | 6-AMIDINE-2-(4-AMIDINO-PHENYL)INDOLE, DNA (5'-D(*GP*GP*CP*CP*AP*AP*TP*TP*GP*G)-3') | Authors: | Vlieghe, D, Van Meervelt, L. | Deposit date: | 1998-10-14 | Release date: | 1999-12-18 | Last modified: | 2024-04-03 | Method: | X-RAY DIFFRACTION (1.89 Å) | Cite: | Crystal structure of d(GGCCAATTGG) complexed with DAPI reveals novel binding mode. Biochemistry, 38, 1999
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1K1D
| Crystal structure of D-hydantoinase | Descriptor: | D-hydantoinase, ZINC ION | Authors: | Cheon, Y.H, Kim, H.S, Han, K.H, Abendroth, J, Niefind, K, Schomburg, D, Wang, J, Kim, Y. | Deposit date: | 2001-09-25 | Release date: | 2002-08-14 | Last modified: | 2011-07-13 | Method: | X-RAY DIFFRACTION (3.01 Å) | Cite: | Crystal structure of D-hydantoinase from Bacillus stearothermophilus: insight into the stereochemistry of enantioselectivity. Biochemistry, 41, 2002
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