4Y4V

Structure of Helicobacter pylori Csd6 in the D-Ala-bound state

Summary for 4Y4V

DescriptorConserved hypothetical secreted protein, D-ALANINE, GLYCEROL, ... (5 entities in total)
Functional Keywordscsd6, cell shape, l, d-carboxypeptidase, helicobacter pylori, hp0518, flagellin, peptidoglycan, hydrolase
Biological sourceHelicobacter pylori 26695
Total number of polymer chains2
Total molecular weight79933.73
Authors
Kim, H.S.,Im, H.N.,Yoon, H.J.,Suh, S.W. (deposition date: 2015-02-11, release date: 2015-09-02, Last modification date: 2017-10-18)
Primary citation
Kim, H.S.,Im, H.N.,An, D.R.,Yoon, J.Y.,Jang, J.Y.,Mobashery, S.,Hesek, D.,Lee, M.,Yoo, J.,Cui, M.,Choi, S.,Kim, C.,Lee, N.K.,Kim, S.J.,Kim, J.Y.,Bang, G.,Han, B.W.,Lee, B.I.,Yoon, H.J.,Suh, S.W.
The Cell Shape-determining Csd6 Protein from Helicobacter pylori Constitutes a New Family of l,d-Carboxypeptidase
J.Biol.Chem., 290:25103-25117, 2015
PubMed: 26306031 (PDB entries with the same primary citation)
DOI: 10.1074/jbc.M115.658781
MImport into Mendeley
Experimental method
X-RAY DIFFRACTION (2.04 Å)
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Structure validation

RfreeClashscoreRamachandran outliersSidechain outliersRSRZ outliers0.249100.7%4.4%MetricValuePercentile RanksWorseBetterPercentile relative to all X-ray structuresPercentile relative to X-ray structures of similar resolution

More Asymmetric unit images

Molmil generated image of 4y4v
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Molmil generated image of 4y4v
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Molmil generated image of 4y4v
rotated about y axis by 90°