4Y4V
Structure of Helicobacter pylori Csd6 in the D-Ala-bound state
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | PAL/PLS BEAMLINE 5C (4A) |
Synchrotron site | PAL/PLS |
Beamline | 5C (4A) |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2014-09-25 |
Detector | ADSC QUANTUM 315r |
Wavelength(s) | 0.9796 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 63.404, 90.607, 127.920 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 30.000 - 2.040 |
R-factor | 0.19381 |
Rwork | 0.191 |
R-free | 0.24197 |
Structure solution method | SAD |
RMSD bond length | 0.010 |
RMSD bond angle | 1.393 |
Data reduction software | DENZO |
Data scaling software | HKL-2000 |
Phasing software | PHENIX |
Refinement software | REFMAC (5.8.0103) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 50.000 | 2.080 |
High resolution limit [Å] | 2.040 | 2.040 |
Rmerge | 0.086 | 0.537 |
Number of reflections | 47575 | |
<I/σ(I)> | 29.3 | 3.4 |
Completeness [%] | 99.9 | 100 |
Redundancy | 4.78 | 4.8 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 7.5 | 296 | 1.5%(v/v) Tacsimate, 22%(w/v) PEG 3350, 100 mM sodium-HEPES |