Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

4XQO
DownloadVisualize
BU of 4xqo by Molmil
Crystal structure of hemagglutinin from Jiangxi-Donghu (2013) H10N8 influenza virus in complex with 6'-SLN
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Hemagglutinin HA1 chain, ...
Authors:Tzarum, N, Zhang, H, Zhu, X, Wilson, I.A.
Deposit date:2015-01-19
Release date:2015-04-01
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (2.85 Å)
Cite:A Human-Infecting H10N8 Influenza Virus Retains a Strong Preference for Avian-type Receptors.
Cell Host Microbe, 17, 2015
8PI3
DownloadVisualize
BU of 8pi3 by Molmil
Cathepsin S Y132D mutant in complex with NNPI-C10 inhibitor
Descriptor: 1,2-ETHANEDIOL, ACETATE ION, CADMIUM ION, ...
Authors:Petruzzella, A, Lau, K, Pojer, F, Oricchio, E.
Deposit date:2023-06-21
Release date:2024-06-05
Last modified:2024-06-12
Method:X-RAY DIFFRACTION (1.73 Å)
Cite:Antibody-peptide conjugates deliver covalent inhibitors blocking oncogenic cathepsins.
Nat.Chem.Biol., 2024
8PI9
DownloadVisualize
BU of 8pi9 by Molmil
DNA binding domain of HNF-1A bound to P2-HNF4A promoter DNA variant (P2 -181G>A)
Descriptor: Chains: E, Chains: F, Hepatocyte nuclear factor 1-alpha
Authors:Kind, L, Myllykoski, M, Raasakka, A, Kursula, P.
Deposit date:2023-06-21
Release date:2024-06-19
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Molecular mechanism of HNF-1A-mediated HNF4A gene regulation and promoter-driven HNF4A-MODY diabetes.
JCI Insight, 9, 2024
8Q6Z
DownloadVisualize
BU of 8q6z by Molmil
Crystal structure of Cytochrome P450 GymB1 from Streptomyces flavidovirens
Descriptor: GLYCEROL, GymB1, PROTOPORPHYRIN IX CONTAINING FE
Authors:Freytag, J, Kelm, T, Stehle, T, Zocher, G.
Deposit date:2023-08-15
Release date:2024-06-26
Method:X-RAY DIFFRACTION (1.96 Å)
Cite:Intramolecular Coupling and Nucleobase Transfer - How Cytochrome P450 Enzymes GymBx Establish Their Chemoselectivity
Chemcatchem, 16, 2024
8PEL
DownloadVisualize
BU of 8pel by Molmil
Structure of C. thermophilum RNA exosome core
Descriptor: Exoribonuclease phosphorolytic domain-containing protein, Exoribonuclease-like protein, Exosome complex component MTR3, ...
Authors:Lazzaretti, D, Holdermann, I, Sprangers, R.
Deposit date:2023-06-14
Release date:2024-06-26
Method:X-RAY DIFFRACTION (3.81 Å)
Cite:Beyond static structures: quantitative dynamics in the eukaryotic RNA exosome complex
Biorxiv, 2024
8PF0
DownloadVisualize
BU of 8pf0 by Molmil
Diubiquitin-derived artificial binding protein (Affilin) variant Af1 specific to oncofetal fibronectin
Descriptor: Affilin variant Af1 (77405), COPPER (II) ION, IMIDAZOLE
Authors:Parthier, C, Katzschmann, A, Fiedler, E, Haupts, U, Reimann, A.
Deposit date:2023-06-15
Release date:2024-06-26
Last modified:2024-08-14
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Ubiquitin-derived artificial binding proteins targeting oncofetal fibronectin reveal scaffold plasticity by beta-strand slippage.
Commun Biol, 7, 2024
8QAB
DownloadVisualize
BU of 8qab by Molmil
X-ray crystal structure of a de novo designed antiparallel coiled-coil hexameric alpha-helical barrel with 4 heptad repeats, apCCHex
Descriptor: 1-methoxy-2-[2-[2-[2-[2-[2-[2-[2-[2-[2-(2-methoxyethoxy)ethoxy]ethoxy]ethoxy]ethoxy]ethoxy]ethoxy]ethoxy]ethoxy]ethoxy]ethane, apCCHex
Authors:Naudin, E.N, Albanese, K.I, Petrenas, R, Woolfson, D.N.
Deposit date:2023-08-22
Release date:2024-07-03
Last modified:2024-08-07
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Rationally seeded computational protein design of ɑ-helical barrels.
Nat.Chem.Biol., 20, 2024
8PI8
DownloadVisualize
BU of 8pi8 by Molmil
DNA binding domain of HNF-1A bound to P2-HNF4A promoter DNA
Descriptor: Chains: E, Chains: F, GLYCEROL, ...
Authors:Kind, L, Myllykoski, M, Raasakka, A, Kursula, P.
Deposit date:2023-06-21
Release date:2024-06-19
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Molecular mechanism of HNF-1A-mediated HNF4A gene regulation and promoter-driven HNF4A-MODY diabetes.
JCI Insight, 9, 2024
8PEQ
DownloadVisualize
BU of 8peq by Molmil
Complex of diubiquitin-derived artificial binding protein (Affilin) variant Af2 with its target oncofetal fibronectin (fragment 7B8)
Descriptor: Affilin variant Af2, Fibronectin, SULFATE ION
Authors:Parthier, C, Katzschmann, A, Fiedler, E, Haupts, U, Reimann, A.
Deposit date:2023-06-14
Release date:2024-06-26
Last modified:2024-08-14
Method:X-RAY DIFFRACTION (2.32 Å)
Cite:Ubiquitin-derived artificial binding proteins targeting oncofetal fibronectin reveal scaffold plasticity by beta-strand slippage.
Commun Biol, 7, 2024
8PI7
DownloadVisualize
BU of 8pi7 by Molmil
DNA binding domain of HNF-1A bound to P2-HNF4A promoter DNA variant (P2 -169C>T)
Descriptor: CHLORIDE ION, Chains: E, Chains: F, ...
Authors:Kind, L, Myllykoski, M, Raasakka, A, Kursula, P.
Deposit date:2023-06-21
Release date:2024-06-19
Method:X-RAY DIFFRACTION (3.2 Å)
Cite:Molecular mechanism of HNF-1A-mediated HNF4A gene regulation and promoter-driven HNF4A-MODY diabetes.
JCI Insight, 9, 2024
1B8G
DownloadVisualize
BU of 1b8g by Molmil
1-AMINOCYCLOPROPANE-1-CARBOXYLATE SYNTHASE
Descriptor: PROTEIN (1-AMINOCYCLOPROPANE-1-CARBOXYLATE SYNTHASE), PYRIDOXAL-5'-PHOSPHATE
Authors:Capitani, G, Hohenester, E, Feng, L, Storici, P, Kirsch, J.F, Jansonius, J.N.
Deposit date:1999-01-31
Release date:2000-01-26
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (2.37 Å)
Cite:Structure of 1-aminocyclopropane-1-carboxylate synthase, a key enzyme in the biosynthesis of the plant hormone ethylene.
J.Mol.Biol., 294, 1999
8PIA
DownloadVisualize
BU of 8pia by Molmil
DNA binding domain of HNF-1A bound to P2-HNF4A promoter DNA variant (P2 -181G>T)
Descriptor: Chains: E, Chains: F, GLYCEROL, ...
Authors:Kind, L, Myllykoski, M, Raasakka, A, Kursula, P.
Deposit date:2023-06-21
Release date:2024-06-19
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Molecular mechanism of HNF-1A-mediated HNF4A gene regulation and promoter-driven HNF4A-MODY diabetes.
JCI Insight, 9, 2024
8POT
DownloadVisualize
BU of 8pot by Molmil
Ternary complex of E. coli leucyl-tRNA synthetase, tRNA(leu) and the benzoxaborole cmpd9 in the editing conformation
Descriptor: 1,2-ETHANEDIOL, Leucine--tRNA ligase, [(1R,3'S,5S,6R,8R)-3'-(aminomethyl)-8-(6-aminopurin-9-yl)-4'-bromanyl-7'-[3-[methyl-(phenylmethyl)amino]propoxy]spiro[2,4,7-trioxa-3$l^{4}-borabicyclo[3.3.0]octane-3,1'-3H-2,1$l^{4}-benzoxaborole]-6-yl]methyl dihydrogen phosphate, ...
Authors:Palencia, A, Hoffmann, G.
Deposit date:2023-07-05
Release date:2024-06-12
Last modified:2024-07-24
Method:X-RAY DIFFRACTION (2.149 Å)
Cite:Targeting a microbiota Wolbachian aminoacyl-tRNA synthetase to block its pathogenic host.
Sci Adv, 10, 2024
8POR
DownloadVisualize
BU of 8por by Molmil
Crystal structure of wolbachia leucyl-tRNA synthetase editing domain bound to cmpd6-AMP adduct
Descriptor: 1,2-ETHANEDIOL, 2-{2-[2-(2-{2-[2-(2-ETHOXY-ETHOXY)-ETHOXY]-ETHOXY}-ETHOXY)-ETHOXY]-ETHOXY}-ETHANOL, Leucine--tRNA ligase, ...
Authors:Palencia, A, Lukarska, M.
Deposit date:2023-07-05
Release date:2024-06-12
Last modified:2024-07-24
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Targeting a microbiota Wolbachian aminoacyl-tRNA synthetase to block its pathogenic host.
Sci Adv, 10, 2024
8QAD
DownloadVisualize
BU of 8qad by Molmil
X-ray crystal structure of a de novo designed single-chain antiparallel 6-helix coiled-coil alpha-helical barrel, sc-apCC-6-LLIA
Descriptor: DODECAETHYLENE GLYCOL, sc-apCC-6-LLIA
Authors:Albanese, K.I, Petrenas, R, Woolfson, D.N.
Deposit date:2023-08-22
Release date:2024-07-03
Last modified:2024-08-07
Method:X-RAY DIFFRACTION (2.25 Å)
Cite:Rationally seeded computational protein design of ɑ-helical barrels.
Nat.Chem.Biol., 20, 2024
8QAC
DownloadVisualize
BU of 8qac by Molmil
X-ray crystal structure of a de novo designed antiparallel coiled-coil 8-helix bundle with 4 heptad repeats, antiparallel 8-helix bundle-GLIA
Descriptor: antiparallel 8-helix bundle-GLIA
Authors:Albanese, K.I, Dawson, W.M, Petrenas, R, Woolfson, D.N.
Deposit date:2023-08-22
Release date:2024-07-03
Last modified:2024-08-07
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Rationally seeded computational protein design of ɑ-helical barrels.
Nat.Chem.Biol., 20, 2024
8PWK
DownloadVisualize
BU of 8pwk by Molmil
human HINT1 in complex with compound AT8003
Descriptor: Histidine triad nucleotide-binding protein 1, SODIUM ION, [(2~{R},3~{R},4~{R},5~{R})-5-[2-azanyl-6-(methylamino)purin-9-yl]-4-fluoranyl-4-methyl-3-oxidanyl-oxolan-2-yl]methyl dihydrogen phosphate
Authors:Zimberger, C, Canard, B, Ferron, F.
Deposit date:2023-07-20
Release date:2024-07-31
Method:X-RAY DIFFRACTION (2.095 Å)
Cite:The activation chain of the broad-spectrum antiviral bemnifosbuvir at atomic resolution
Plos Biol., 2024
8Q5Y
DownloadVisualize
BU of 8q5y by Molmil
cryoEM structure of SARS-CoV2 Spike trimer in complex with Fab23
Descriptor: Monoclonal antibody Mab 23 (Heavy Chain), Monoclonal antibody Mab 23 (Light chain), Spike glycoprotein
Authors:Hallberg, M, Das, H.
Deposit date:2023-08-10
Release date:2024-07-17
Last modified:2024-08-07
Method:ELECTRON MICROSCOPY (2.6 Å)
Cite:Multi-compartmental diversification of neutralizing antibody lineages dissected in SARS-CoV-2 spike-immunized macaques.
Nat Commun, 15, 2024
8PX3
DownloadVisualize
BU of 8px3 by Molmil
Hepatitis B core protein with bound P1dC
Descriptor: External core antigen, P1dC
Authors:Makbul, C, Khayenko, V, Maric, M.H, Bottcher, B.
Deposit date:2023-07-22
Release date:2024-07-31
Method:ELECTRON MICROSCOPY (3 Å)
Cite:Peptide dimers aggregate Hepatitis B core proteins in live cells
To Be Published
1B4D
DownloadVisualize
BU of 1b4d by Molmil
AMIDOCARBAMATE INHIBITOR OF GLYCOGEN PHOSPHORYLASE
Descriptor: 1-DEOXY-1-METHOXYCARBAMIDO-BETA-D-GLUCO-2-HEPTULOPYRANOSONAMIDE, INOSINIC ACID, PROTEIN (GLYCOGEN PHOSPHORYLASE B), ...
Authors:Tsitsanou, K.E, Oikonomakos, N.G, Zographos, S.E, Skamnaki, V.T, Gregoriou, M, Watson, K.A, Johnson, L.N, Fleet, G.W.J.
Deposit date:1998-12-18
Release date:1998-12-23
Last modified:2023-08-09
Method:X-RAY DIFFRACTION (2 Å)
Cite:Effects of commonly used cryoprotectants on glycogen phosphorylase activity and structure.
Protein Sci., 8, 1999
8Q5O
DownloadVisualize
BU of 8q5o by Molmil
N-terminal domain of restriction endonuclease Eco15I with tetra-methylated target DNA.
Descriptor: CALCIUM ION, DNA (5'-D(*CP*TP*GP*(5CM)P*TP*GP*(5CM)P*TP*C)-3'), DNA (5'-D(*GP*AP*GP*(5CM)P*AP*GP*(5CM)P*AP*G)-3'), ...
Authors:Rafalski, D, Krakowska, K, Bochtler, M.
Deposit date:2023-08-09
Release date:2024-07-17
Last modified:2024-08-07
Method:X-RAY DIFFRACTION (2.33 Å)
Cite:Structural analysis of the BisI family of modification dependent restriction endonucleases.
Nucleic Acids Res., 2024
8QAF
DownloadVisualize
BU of 8qaf by Molmil
X-ray crystal structure of a de novo designed single-chain antiparallel 8-helix coiled-coil alpha-helical barrel, sc-apCC-8
Descriptor: sc-apCC-8
Authors:Albanese, K.I, Petrenas, R, Woolfson, D.N.
Deposit date:2023-08-22
Release date:2024-07-03
Last modified:2024-08-07
Method:X-RAY DIFFRACTION (2 Å)
Cite:Rationally seeded computational protein design of ɑ-helical barrels.
Nat.Chem.Biol., 20, 2024
6Z2M
DownloadVisualize
BU of 6z2m by Molmil
H11-D4, SARS-CoV-2 RBD, CR3022 ternary complex
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, CR3022 antibody, Spike glycoprotein, ...
Authors:Naismith, J.H, Ren, J, Zhou, D, Zhao, Y, Stuart, D.I.
Deposit date:2020-05-17
Release date:2020-06-03
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (2.71 Å)
Cite:Structural characterisation of a nanobody derived from a naive library that neutralises SARS-CoV-2
To Be Published
8PJU
DownloadVisualize
BU of 8pju by Molmil
Crystal structure of the computationally designed SAKe6DEtal protein
Descriptor: SAKe6DEtal
Authors:Wouters, S.M.L.
Deposit date:2023-06-23
Release date:2024-07-10
Method:X-RAY DIFFRACTION (1.72 Å)
Cite:Computational design of the SAKe scaffold proteins
To Be Published
8PMX
DownloadVisualize
BU of 8pmx by Molmil
rat HEV P domain in complex with glycan-sensitive nAb p60.12
Descriptor: Fab p60.12-HC, Fab p60.12-LC, Pro-secreted protein ORF2
Authors:Ssebyatika, G, Krey, T.
Deposit date:2023-06-29
Release date:2024-07-10
Method:X-RAY DIFFRACTION (3.922 Å)
Cite:A novel class of broadly neutralizing hepatitis E virus-specific human antibodies
To Be Published

224004

数据于2024-08-21公开中

PDB statisticsPDBj update infoContact PDBjnumon