PDB: 45953 resultsInfo pagesStatus searchChemie searchBIRD

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6B0D	An E. coli DPS protein from ferritin superfamily Descriptor: DNA protection during starvation protein, FORMIC ACID, SODIUM ION Authors: Rui, W, Ruslan, S, Ronan, K, Adam, J.S. Deposit date: 2017-09-14 Release date: 2018-09-19 Last modified: 2023-10-04 Method: X-RAY DIFFRACTION (1.5 Å) Cite: SIMBAD: a sequence-independent molecular-replacement pipeline. Acta Crystallogr D Struct Biol, 74, 2018
4QJV	The X-ray crystal structure of Rpo3/Rpo11 heterodimer of euryarchaeal RNA polymerase from Thermococcus kodakarensis Descriptor: DNA-directed RNA polymerase subunit D, DNA-directed RNA polymerase subunit L, PHOSPHATE ION Authors: Hirata, A, Murakami, K.S. Deposit date: 2014-06-05 Release date: 2014-10-08 Last modified: 2024-03-20 Method: X-RAY DIFFRACTION (1.601 Å) Cite: The X-ray crystal structure of the euryarchaeal RNA polymerase in an open-clamp configuration Nat Commun, 5, 2014
8Q3I	Mycobacterium smegmatis RNA polymerase in complex with HelD, SigA and RbpA in State I Descriptor: DNA-directed RNA polymerase subunit alpha, DNA-directed RNA polymerase subunit beta, DNA-directed RNA polymerase subunit beta', ... Authors: Koval, T, Krasny, L, Dohnalek, J, Kouba, T. Deposit date: 2023-08-04 Release date: 2024-08-14 Method: ELECTRON MICROSCOPY (3.11 Å) Cite: Molecular insights into RNA polymerase recycling by mycobacterial HelD To Be Published
8YDC	Crystal structure of a hammerhead ribozyme with pseudoknot Descriptor: DNA/RNA (5'-R(*AP*CP*AP*UP*GP*UP*CP*U)-D(P*C)-R(P*UP*GP*GP*GP*A)-3'), GUANOSINE-5'-TRIPHOSPHATE, ribozyme strand Authors: Liu, Y, Zhan, X. Deposit date: 2024-02-20 Release date: 2024-08-21 Method: X-RAY DIFFRACTION (2.89 Å) Cite: The structure and catalytic mechanism of a pseudoknot-containing hammerhead ribozyme. Nat Commun, 15, 2024
6F6W	Structure of Mycobacterium smegmatis RNA polymerase core Descriptor: DNA-directed RNA polymerase subunit alpha, DNA-directed RNA polymerase subunit beta, DNA-directed RNA polymerase subunit beta', ... Authors: Kouba, T, Barvik, I, Krasny, L. Deposit date: 2017-12-06 Release date: 2018-12-19 Last modified: 2024-05-15 Method: ELECTRON MICROSCOPY (3.81 Å) Cite: The Core and Holoenzyme Forms of RNA Polymerase fromMycobacterium smegmatis. J. Bacteriol., 201, 2019
6W5I	Cryo-EM structure of MLL1 in complex with RbBP5, WDR5, SET1, and ASH2L bound to the nucleosome (Class01) Descriptor: DNA (147-MER), Histone H2A, Histone H2B 1.1, ... Authors: Park, S.H, Lee, Y.T, Ayoub, A, Dou, Y, Cho, U. Deposit date: 2020-03-13 Release date: 2021-03-31 Last modified: 2024-05-29 Method: ELECTRON MICROSCOPY (6.9 Å) Cite: Mechanism for DPY30 and ASH2L intrinsically disordered regions to modulate the MLL/SET1 activity on chromatin. Nat Commun, 12, 2021
6W5N	Cryo-EM structure of MLL1 in complex with RbBP5, WDR5, SET1, and ASH2L bound to the nucleosome (Class05) Descriptor: DNA (147-MER), Histone H2A type 1, Histone H2B 1.1, ... Authors: Park, S.H, Lee, Y.T, Ayoub, A, Dou, Y, Cho, U. Deposit date: 2020-03-13 Release date: 2021-03-31 Last modified: 2024-05-29 Method: ELECTRON MICROSCOPY (6 Å) Cite: Mechanism for DPY30 and ASH2L intrinsically disordered regions to modulate the MLL/SET1 activity on chromatin. Nat Commun, 12, 2021
6W5M	Cryo-EM structure of MLL1 in complex with RbBP5, WDR5, SET1, and ASH2L bound to the nucleosome (Class02) Descriptor: DNA (147-MER), Histone H2A type 1, Histone H2B 1.1, ... Authors: Park, S.H, Lee, Y.T, Ayoub, A, Dou, Y, Cho, U. Deposit date: 2020-03-13 Release date: 2021-03-31 Last modified: 2024-05-29 Method: ELECTRON MICROSCOPY (4.6 Å) Cite: Mechanism for DPY30 and ASH2L intrinsically disordered regions to modulate the MLL/SET1 activity on chromatin. Nat Commun, 12, 2021
2M4K	Solution structure of the delta subunit of RNA polymerase from Bacillus subtilis Descriptor: DNA-directed RNA polymerase subunit delta Authors: Papouskova, V, Novacek, J, Kaderavek, P, Zidek, L, Rabatinova, A, Sanderova, H, Krasny, L, Sklenar, V. Deposit date: 2013-02-07 Release date: 2013-10-09 Last modified: 2024-05-15 Method: SOLUTION NMR Cite: Structural Study of the Partially Disordered Full-Length delta Subunit of RNA Polymerase from Bacillus subtilis. Chembiochem, 14, 2013
3LTI	Crystal structure of the Escherichia coli RNA polymerase beta subunit beta2-betai4 domains Descriptor: DNA-directed RNA polymerase subunit beta Authors: Darst, S.A, Opalka, N. Deposit date: 2010-02-16 Release date: 2010-10-20 Last modified: 2012-02-22 Method: X-RAY DIFFRACTION (1.6 Å) Cite: Complete structural model of Escherichia coli RNA polymerase from a hybrid approach. Plos Biol., 8, 2010
8PV9	Structure of DPS determined by cryoEM at 100 keV Descriptor: DNA protection during starvation protein Authors: McMullan, G, Naydenova, K, Mihaylov, D, Peet, M.J, Wilson, H, Yamashita, K, Dickerson, J.L, Chen, S, Cannone, G, Lee, Y, Hutchings, K.A, Gittins, O, Sobhy, M, Wells, T, El-Gomati, M.M, Dalby, J, Meffert, M, Schulze-Briese, C, Henderson, R, Russo, C.J. Deposit date: 2023-07-17 Release date: 2023-11-29 Last modified: 2023-12-06 Method: ELECTRON MICROSCOPY (2.7 Å) Cite: Structure determination by cryoEM at 100 keV. Proc.Natl.Acad.Sci.USA, 120, 2023
8GPN	Human menin in complex with H3K79Me2 nucleosome Descriptor: DNA (177-MER), Histone H2A type 1, Histone H2B 1.1, ... Authors: Lin, J, Yu, D, Lam, W.H, Dang, S, Zhai, Y, Li, X.D. Deposit date: 2022-08-26 Release date: 2023-02-15 Last modified: 2023-03-01 Method: ELECTRON MICROSCOPY (3.2 Å) Cite: Menin "reads" H3K79me2 mark in a nucleosomal context. Science, 379, 2023
2PA8	X-Ray Crystal Structure of the D/L Subcomplex of the Sulfolobus Solfataricus RNA polymerase Descriptor: DNA-directed RNA polymerase subunit D, DNA-directed RNA polymerase subunit L, FE3-S4 CLUSTER, ... Authors: Hirata, A, Murakami, K.S. Deposit date: 2007-03-27 Release date: 2008-02-05 Last modified: 2023-08-30 Method: X-RAY DIFFRACTION (1.76 Å) Cite: The X-ray crystal structure of RNA polymerase from Archaea. Nature, 451, 2008
6Z6P	HDAC-PC-Nuc Descriptor: DNA (145-MER), HDA1 complex subunit 2, HDA1 complex subunit 3,HDA1 complex subunit 3, ... Authors: Lee, J.-H, Bollschweiler, D, Schaefer, T, Huber, R. Deposit date: 2020-05-28 Release date: 2021-02-17 Method: ELECTRON MICROSCOPY (4.43 Å) Cite: Structural basis for the regulation of nucleosome recognition and HDAC activity by histone deacetylase assemblies. Sci Adv, 7, 2021
7ZC4	Cryo-EM structure of POLRMT mutant. Descriptor: DNA-directed RNA polymerase, mitochondrial Authors: Das, H, Hallberg, B.M. Deposit date: 2022-03-25 Release date: 2023-02-01 Last modified: 2024-07-24 Method: ELECTRON MICROSCOPY (3.24 Å) Cite: Non-coding 7S RNA inhibits transcription via mitochondrial RNA polymerase dimerization. Cell, 185, 2022
6GCM	Escherichia coli DPS Descriptor: DNA protection during starvation protein Authors: Kovalenko, V.V, Loiko, N.G, Tereshkin, E.V, Tereshkina, K.B, Chulichkov, A.L, Popov, A.N, Krupyanskii, Y.F. Deposit date: 2018-04-18 Release date: 2019-05-01 Last modified: 2024-01-17 Method: X-RAY DIFFRACTION (2.45 Å) Cite: Escherichia coli DPS To Be Published
1DZF	RPB5 from S.cerevisiae Descriptor: DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 1 Authors: Todone, F, Weinzierl, R.O.J, Brick, P, Onesti, S. Deposit date: 2000-02-25 Release date: 2000-06-09 Last modified: 2024-05-08 Method: X-RAY DIFFRACTION (1.9 Å) Cite: Crystal Structure of Rpb5, a Universal Eukaryotic RNA Polymerase Subunit and Transcription Factor Interaction Target Proc.Natl.Acad.Sci.USA, 97, 2000
6HT5	Oct4/Sox2:UTF1 structure Descriptor: DNA (5'-D(*TP*TP*CP*AP*CP*TP*AP*GP*CP*AP*TP*AP*AP*CP*AP*AP*TP*GP*AP*GP*G)-3'), DNA (5'-D(P*CP*CP*TP*CP*AP*TP*TP*GP*TP*TP*AP*TP*GP*CP*TP*AP*GP*TP*GP*AP*AP*G)-3'), POU domain, ... Authors: Vahokoski, J, Meusch, D, Groves, M, Pogenberg, V, Wilmanns, M. Deposit date: 2018-10-03 Release date: 2019-10-23 Last modified: 2024-01-24 Method: X-RAY DIFFRACTION (3.451 Å) Cite: Oct4/Sox2:UTF1 structure To Be Published
4EXT	Structure of polymerase-interacting domain of human Rev1 in complex with translesional synthesis polymerase zeta Descriptor: DNA repair protein REV1, Mitotic spindle assembly checkpoint protein MAD2B, peptide from DNA polymerase zeta catalytic subunit Authors: Liu, D.N, Ryu, K.S, Ko, J.S, Choi, B.S. Deposit date: 2012-05-01 Release date: 2013-05-08 Last modified: 2024-03-20 Method: X-RAY DIFFRACTION (1.9 Å) Cite: Insights into the scaffold mechanism of human Rev1 in translesional synthesis revealed by structural studies on its polymerase-interacting domain To be Published
8DKC	P. gingivalis RNA Polymerase Descriptor: DNA-directed RNA polymerase subunit alpha, DNA-directed RNA polymerase subunit beta, DNA-directed RNA polymerase subunit beta', ... Authors: Liu, B, Bu, F. Deposit date: 2022-07-05 Release date: 2023-06-21 Last modified: 2024-05-01 Method: ELECTRON MICROSCOPY (3.5 Å) Cite: Cryo-EM Structure of Porphyromonas gingivalis RNA Polymerase. J.Mol.Biol., 436, 2024
3IHQ	Crystal Structure of Reduced C10S Spx in Complex with the Alpha C-terminal Domain of RNA Polymeras Descriptor: DNA-directed RNA polymerase subunit alpha, IMIDAZOLE, Regulatory protein spx Authors: Newberry, K.J, Brennan, R.G. Deposit date: 2009-07-30 Release date: 2010-02-02 Last modified: 2023-09-06 Method: X-RAY DIFFRACTION (1.9 Å) Cite: Promoter recognition by a complex of Spx and the C-terminal domain of the RNA polymerase alpha subunit. Plos One, 5, 2010
2CSF	Solution structure of the second CUT domain of human SATB2 Descriptor: DNA-binding protein SATB2 Authors: Inoue, K, Hayashi, F, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI) Deposit date: 2005-05-21 Release date: 2005-11-21 Last modified: 2024-05-29 Method: SOLUTION NMR Cite: Solution structure of the second CUT domain of human SATB2 To be Published
2JW5	Polymerase Lambda BRCT domain Descriptor: DNA polymerase lambda Authors: Mueller, G.A, Moon, A.F, DeRose, E.F, Pedersen, L.C, London, R.E. Deposit date: 2007-10-05 Release date: 2007-10-23 Last modified: 2024-05-29 Method: SOLUTION NMR Cite: Polymerase Lambda BRCT domain To be Published
4XUJ	Nucleosome core particle containing adducts from treatment with a thiomorpholine-substituted [(eta-6-p-cymene)Ru(3-hydroxy-2-pyridone)Cl] compound Descriptor: DNA (145-MER), Histone H2A, Histone H2B 1.1, ... Authors: Adhireksan, Z, Davey, C.A. Deposit date: 2015-01-26 Release date: 2016-01-27 Last modified: 2023-11-08 Method: X-RAY DIFFRACTION (3.18 Å) Cite: Contrasting Cytotoxicity and Reactivity of RuII-Arene Complexes of Morpholine vs Thiomorpholine Substituted 3-Hydroxy-2-pyridone Ligands To Be Published
1EF4	SOLUTION STRUCTURE OF THE ESSENTIAL RNA POLYMERASE SUBUNIT RPB10 FROM METHANOBACTERIUM THERMOAUTOTROPHICUM Descriptor: DNA-DIRECTED RNA POLYMERASE, ZINC ION Authors: Mackereth, C.D, Arrowsmith, C.H, Edwards, A.M, Mcintosh, L.P, Northeast Structural Genomics Consortium (NESG) Deposit date: 2000-02-07 Release date: 2000-06-14 Last modified: 2024-05-22 Method: SOLUTION NMR Cite: Zinc-bundle structure of the essential RNA polymerase subunit RPB10 from Methanobacterium thermoautotrophicum. Proc.Natl.Acad.Sci.USA, 97, 2000

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