PDB: 72960 resultsInfo pagesStatus searchChemie searchBIRD

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7QG6	Co-crystal structure of UPF3A-RRM-NOPS-L with UPF2-MIF4GIII Descriptor: CHLORIDE ION, Regulator of nonsense transcripts 2, Regulator of nonsense transcripts 3A, ... Authors: Powers, K.T, Bufton, J.C, Szeto, J.A, Schaffitzel, C. Deposit date: 2021-12-07 Release date: 2022-07-20 Last modified: 2024-01-31 Method: X-RAY DIFFRACTION (2.95 Å) Cite: Structures of nonsense-mediated mRNA decay factors UPF3B and UPF3A in complex with UPF2 reveal molecular basis for competitive binding and for neurodevelopmental disorder-causing mutation. Nucleic Acids Res., 50, 2022
6O1M	Architectural principles for Hfq/Crc-mediated regulation of gene expression. Hfq-Crc-amiE 2:4:2 complex Descriptor: Catabolite repression control protein, RNA (5'-R(*AP*AP*AP*AP*AP*UP*AP*AP*CP*AP*AP*CP*AP*AP*GP*AP*GP*G)-3'), RNA-binding protein Hfq Authors: Pei, X.Y, Dendooven, T, Sonnleitner, E, Chen, S, Blasi, U, Luisi, B.F. Deposit date: 2019-02-20 Release date: 2019-03-13 Last modified: 2024-03-20 Method: ELECTRON MICROSCOPY (3.15 Å) Cite: Architectural principles for Hfq/Crc-mediated regulation of gene expression. Elife, 8, 2019
1KD1	Co-crystal Structure of Spiramycin bound to the 50S Ribosomal Subunit of Haloarcula marismortui Descriptor: 23S RRNA, 5S RRNA, CADMIUM ION, ... Authors: Hansen, J.L, Ippolito, J.A, Ban, N, Nissen, P, Moore, P.B, Steitz, T.A. Deposit date: 2001-11-12 Release date: 2002-07-19 Last modified: 2023-08-16 Method: X-RAY DIFFRACTION (3 Å) Cite: The structures of four macrolide antibiotics bound to the large ribosomal subunit. Mol.Cell, 10, 2002
1K9M	Co-crystal structure of tylosin bound to the 50S ribosomal subunit of Haloarcula marismortui Descriptor: 23S RRNA, 5S RRNA, CADMIUM ION, ... Authors: Hansen, J.L, Ippolito, J.A, Ban, N, Nissen, P, Moore, P.B, Steitz, T.A. Deposit date: 2001-10-29 Release date: 2002-07-19 Last modified: 2023-08-16 Method: X-RAY DIFFRACTION (3 Å) Cite: The structures of four macrolide antibiotics bound to the large ribosomal subunit. Mol.Cell, 10, 2002
5G4U	Association of three two-k-turn units based on Kt-7 3bU,3nU, forming a triangular-shaped structure Descriptor: 50S RIBOSOMAL PROTEIN L7AE, HMKT-7 Authors: Huang, L, Lilley, D.M.J. Deposit date: 2016-05-17 Release date: 2016-09-28 Last modified: 2024-01-10 Method: X-RAY DIFFRACTION (2.65 Å) Cite: A Quasi-Cyclic RNA Nano-Scale Molecular Object Constructed Using Kink Turns. Nanoscale, 8, 2016
1K8A	Co-crystal structure of Carbomycin A bound to the 50S ribosomal subunit of Haloarcula marismortui Descriptor: 23S RRNA, 5S RRNA, CADMIUM ION, ... Authors: Hansen, J.L, Ippolito, J.A, Ban, N, Nissen, P, Moore, P.B, Steitz, T. Deposit date: 2001-10-23 Release date: 2002-07-19 Last modified: 2023-08-16 Method: X-RAY DIFFRACTION (3 Å) Cite: The structures of four macrolide antibiotics bound to the large ribosomal subunit. Mol.Cell, 10, 2002
8ATV	Cryo-EM structure of yeast mitochondrial RNA polymerase transcription initiation complex with 5-mer RNA, pppGpGpApApA (IC5) Descriptor: DNA (36-MER), DNA-directed RNA polymerase, mitochondrial, ... Authors: Goovaerts, Q, Shen, J, Patel, S.S, Das, K. Deposit date: 2022-08-24 Release date: 2023-08-30 Last modified: 2023-11-01 Method: ELECTRON MICROSCOPY (3.39 Å) Cite: Structures illustrate step-by-step mitochondrial transcription initiation. Nature, 622, 2023
8ATW	Cryo-EM structure of yeast mitochondrial RNA polymerase transcription initiation complex with 6-mer RNA, pppGpGpApApApU (IC6) Descriptor: DNA-directed RNA polymerase, mitochondrial, GUANOSINE-5'-TRIPHOSPHATE, ... Authors: Goovaerts, Q, Shen, J, Patel, S.S, Das, K. Deposit date: 2022-08-24 Release date: 2023-08-30 Last modified: 2023-11-01 Method: ELECTRON MICROSCOPY (3.62 Å) Cite: Structures illustrate step-by-step mitochondrial transcription initiation. Nature, 622, 2023
8ATT	Cryo-EM structure of yeast mitochondrial RNA polymerase transcription initiation complex with 4-mer RNA, pppGpGpUpA (IC4) Descriptor: DNA-directed RNA polymerase, mitochondrial, GUANOSINE-5'-TRIPHOSPHATE, ... Authors: Goovaerts, Q, Shen, J, Patel, S.S, Das, K. Deposit date: 2022-08-24 Release date: 2023-08-30 Last modified: 2023-11-01 Method: ELECTRON MICROSCOPY (3.44 Å) Cite: Structures illustrate step-by-step mitochondrial transcription initiation. Nature, 622, 2023
4QQB	Structural basis for the assembly of the SXL-UNR translation regulatory complex Descriptor: Protein sex-lethal, Upstream of N-ras, isoform A, ... Authors: Hennig, J, Popowicz, G.M, Sattler, M. Deposit date: 2014-06-27 Release date: 2014-09-03 Last modified: 2023-09-20 Method: X-RAY DIFFRACTION (2.8 Å) Cite: Structural basis for the assembly of the Sxl-Unr translation regulatory complex. Nature, 515, 2014
4BA2	Archaeal exosome (Rrp4-Rrp41(D182A)-Rrp42) bound to inorganic phosphate Descriptor: 5'-R(*AP*AP*AP*AP)-3', PENTAETHYLENE GLYCOL, PHOSPHATE ION, ... Authors: Lorentzen, E, Conti, E. Deposit date: 2012-09-10 Release date: 2012-10-03 Last modified: 2023-12-20 Method: X-RAY DIFFRACTION (2.501 Å) Cite: Crystal Structure of a 9-Subunit Archaeal Exosome in Pre-Catalytic States of the Phosphorolytic Reaction. Archaea, 2012, 2012
5DNP	Crystal structure of Mmi1 YTH domain Descriptor: PHOSPHATE ION, YTH domain-containing protein mmi1 Authors: Wang, C.Y, Zhu, Y.W, Shi, Y.Y, Wu, J.H. Deposit date: 2015-09-10 Release date: 2016-04-06 Last modified: 2023-11-08 Method: X-RAY DIFFRACTION (2.3 Å) Cite: A novel RNA-binding mode of the YTH domain reveals the mechanism for recognition of determinant of selective removal by Mmi1 Nucleic Acids Res., 44, 2016
5U5Q	12 Subunit RNA Polymerase II at Room Temperature collected using SFX Descriptor: DNA-directed RNA polymerase II subunit RPB1, DNA-directed RNA polymerase II subunit RPB11, DNA-directed RNA polymerase II subunit RPB2, ... Authors: Bushnell, D.A, Oberthur, D, Mariani, V, Yefanov, O, Tolstikova, A, Barty, A. Deposit date: 2016-12-07 Release date: 2017-03-29 Last modified: 2019-11-27 Method: X-RAY DIFFRACTION (3.8 Å) Cite: Double-flow focused liquid injector for efficient serial femtosecond crystallography. Sci Rep, 7, 2017
7YOT	Cryo-EM structure of RNA polymerase in complex with P protein tetramer of Newcastle disease virus Descriptor: NDV P protein, RNA-directed RNA polymerase L Authors: Chen, Y, Jingyuan, C. Deposit date: 2022-08-02 Release date: 2023-02-15 Last modified: 2023-08-30 Method: ELECTRON MICROSCOPY (3 Å) Cite: Structure of the Newcastle Disease Virus L protein in complex with tetrameric phosphoprotein. Nat Commun, 14, 2023
7YOU	Cryo-EM structure of RNA polymerase in complex with P protein tetramer of Newcastle disease virus Descriptor: NDV P protein, RNA-directed RNA polymerase L Authors: Chen, Y, Jingyuan, C, Xiaoying, F. Deposit date: 2022-08-02 Release date: 2023-02-15 Last modified: 2023-08-30 Method: ELECTRON MICROSCOPY (3.41 Å) Cite: Structure of the Newcastle Disease Virus L protein in complex with tetrameric phosphoprotein. Nat Commun, 14, 2023
7YOV	Cryo-EM structure of RNA polymerase in complex with P protein tetramer of Newcastle disease virus Descriptor: NDV P protein, RNA-directed RNA polymerase L Authors: Chen, Y, Jingyuan, C, Xiaoying, F. Deposit date: 2022-08-02 Release date: 2023-02-15 Last modified: 2023-08-30 Method: ELECTRON MICROSCOPY (3.25 Å) Cite: Structure of the Newcastle Disease Virus L protein in complex with tetrameric phosphoprotein. Nat Commun, 14, 2023
3JCR	3D structure determination of the human*U4/U6.U5* tri-snRNP complex Descriptor: LSm2, LSm3, LSm4, ... Authors: Agafonov, D.E, Kastner, B, Dybkov, O, Hofele, R.V, Liu, W.T, Urlaub, H, Luhrmann, R, Stark, H. Deposit date: 2016-01-21 Release date: 2016-03-09 Last modified: 2024-02-21 Method: ELECTRON MICROSCOPY (7 Å) Cite: Molecular architecture of the human U4/U6.U5 tri-snRNP. Science, 351, 2016
7O5B	Cryo-EM structure of a Bacillus subtilis MifM-stalled ribosome-nascent chain complex with (p)ppGpp-SRP bound Descriptor: 16S rRNA (1533-MER), 23S rRNA (2887-MER), 30S ribosomal protein S10, ... Authors: Kratzat, H, Czech, L, Berninghausen, O, Bange, G, Beckmann, R. Deposit date: 2021-04-08 Release date: 2022-02-02 Last modified: 2022-03-09 Method: ELECTRON MICROSCOPY (3.33 Å) Cite: Inhibition of SRP-dependent protein secretion by the bacterial alarmone (p)ppGpp. Nat Commun, 13, 2022
7WM6	Crystal structure of SAH-bound TrmM from Mycoplasma capricolum Descriptor: Methyltransferase, S-ADENOSYL-L-HOMOCYSTEINE, SULFATE ION Authors: Jeong, H, Kim, J. Deposit date: 2022-01-14 Release date: 2022-06-29 Last modified: 2023-11-29 Method: X-RAY DIFFRACTION (2.54 Å) Cite: Structural and functional characterization of TrmM in m 6 A modification of bacterial tRNA. Protein Sci., 31, 2022
4WYV	Crystal Structure of Human Translin in Open Conformation Descriptor: Translin Authors: Dvir, H, Eliahoo, E, Alian, A. Deposit date: 2014-11-18 Release date: 2014-11-26 Last modified: 2024-01-10 Method: X-RAY DIFFRACTION (3 Å) Cite: A novel open-barrel structure of octameric translin reveals a potential RNA entryway. J.Mol.Biol., 427, 2015
3JBV	Mechanisms of Ribosome Stalling by SecM at Multiple Elongation Steps Descriptor: 30S ribosomal protein S10, 30S ribosomal protein S11, 30S ribosomal protein S12, ... Authors: Zhang, J, Pan, X.J, Yan, K.G, Sun, S, Gao, N, Sui, S.F. Deposit date: 2015-10-16 Release date: 2016-01-27 Last modified: 2023-12-27 Method: ELECTRON MICROSCOPY (3.32 Å) Cite: Mechanisms of ribosome stalling by SecM at multiple elongation steps Elife, 4, 2015
8AP1	Cryo-EM structure of yeast mitochondrial RNA polymerase transcription initiation complex with two GTP molecules poised for de novo initiation (IC2) Descriptor: DNA-directed RNA polymerase, mitochondrial, GUANOSINE-5'-TRIPHOSPHATE, ... Authors: Goovaerts, Q, Shen, J, Patel, S.S, Das, K. Deposit date: 2022-08-09 Release date: 2023-08-23 Last modified: 2023-11-01 Method: ELECTRON MICROSCOPY (3.47 Å) Cite: Structures illustrate step-by-step mitochondrial transcription initiation. Nature, 622, 2023
7ORL	La Crosse virus polymerase at transcription initiation stage Descriptor: 7-METHYL-GUANOSINE-5'-TRIPHOSPHATE-5'-GUANOSINE, MAGNESIUM ION, PYROPHOSPHATE 2-, ... Authors: Arragain, B, Durieux Trouilleton, Q, Baudin, F, Cusack, S, Schoehn, G, Malet, H. Deposit date: 2021-06-06 Release date: 2022-02-16 Last modified: 2024-07-17 Method: ELECTRON MICROSCOPY (3.6 Å) Cite: Structural snapshots of La Crosse virus polymerase reveal the mechanisms underlying Peribunyaviridae replication and transcription. Nat Commun, 13, 2022
6O1L	Architectural principles for Hfq/Crc-mediated regulation of gene expression Hfq-Crc-amiE 2:3:2 complex Descriptor: Catabolite repression control protein, RNA (5'-R(*AP*AP*AP*AP*AP*UP*AP*AP*CP*AP*AP*CP*AP*AP*GP*AP*GP*G)-3'), RNA-binding protein Hfq Authors: Pei, X.Y, Dendooven, T, Sonnleitner, E, Chen, S, Blasi, U, Luisi, B.F. Deposit date: 2019-02-20 Release date: 2019-03-13 Last modified: 2024-03-20 Method: ELECTRON MICROSCOPY (3.37 Å) Cite: Architectural principles for Hfq/Crc-mediated regulation of gene expression. Elife, 8, 2019
6O1K	Architectural principles for Hfq/Crc-mediated regulation of gene expression. Hfq-Crc-amiE 2:2:2 complex (core complex) Descriptor: Catabolite repression control protein, RNA (5'-R(*AP*AP*AP*AP*AP*UP*AP*AP*CP*AP*AP*CP*AP*AP*GP*AP*GP*G)-3'), RNA-binding protein Hfq Authors: Pei, X.Y, Dendooven, T, Sonnleitner, E, Chen, S, Blasi, U, Luisi, B.F. Deposit date: 2019-02-20 Release date: 2019-03-13 Last modified: 2024-03-20 Method: ELECTRON MICROSCOPY (3.13 Å) Cite: Architectural principles for Hfq/Crc-mediated regulation of gene expression Elife, 8, 2019

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