PDB: 72372 resultsInfo pagesStatus searchChemie searchBIRD

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8DPH	Cryo-EM structure of the 5HT2C receptor (VGV isoform) bound to lorcaserin Descriptor: (1R)-8-chloro-1-methyl-2,3,4,5-tetrahydro-1H-3-benzazepine, 5-hydroxytryptamine receptor 2C, Antibody fragment scFv16, ... Authors: Gumpper, R.H, Fay, J.F, Roth, B.L. Deposit date: 2022-07-15 Release date: 2022-08-24 Last modified: 2022-08-31 Method: ELECTRON MICROSCOPY (3.2 Å) Cite: Molecular insights into the regulation of constitutive activity by RNA editing of 5HT 2C serotonin receptors. Cell Rep, 40, 2022
8DPF	Cryo-EM structure of the 5HT2C receptor (INI isoform) bound to lorcaserin Descriptor: (1R)-8-chloro-1-methyl-2,3,4,5-tetrahydro-1H-3-benzazepine, 5-hydroxytryptamine receptor 2C, Antibody fragment scFv16, ... Authors: Gumpper, R.H, Fay, J.F, Roth, B.L. Deposit date: 2022-07-15 Release date: 2022-08-24 Last modified: 2022-08-31 Method: ELECTRON MICROSCOPY (2.84 Å) Cite: Molecular insights into the regulation of constitutive activity by RNA editing of 5HT 2C serotonin receptors. Cell Rep, 40, 2022
2HUA	Solution Structure of CSFV IRES Domain IIa Descriptor: CSFV IRES Domain IIa Authors: Locker, N, Easton, L.E, Lukavsky, P.J. Deposit date: 2006-07-26 Release date: 2007-04-17 Last modified: 2024-05-29 Method: SOLUTION NMR Cite: HCV and CSFV IRES domain II mediate eIF2 release during 80S ribosome assembly. Embo J., 26, 2007
7EF1	crystal structure of maize SHH2 SAWADEE domain in complex with and H3K9me1 peptide Descriptor: HB transcription factor, Histone H3.2, ZINC ION Authors: Wang, Y, Du, J. Deposit date: 2021-03-20 Release date: 2021-06-30 Last modified: 2023-11-29 Method: X-RAY DIFFRACTION (1.9 Å) Cite: Recognition of H3K9me1 by maize RNA-directed DNA methylation factor SHH2. J Integr Plant Biol, 63, 2021
7EF2	Crystal structure of maize SHH2 SAWADEE domain in complex with an H3K9me3 peptide Descriptor: HB transcription factor, Histone H3.2, ZINC ION Authors: Wang, Y, Du, J. Deposit date: 2021-03-20 Release date: 2021-06-30 Last modified: 2023-11-29 Method: X-RAY DIFFRACTION (2 Å) Cite: Recognition of H3K9me1 by maize RNA-directed DNA methylation factor SHH2. J Integr Plant Biol, 63, 2021
7EF3	crystal structure of maize SHH2 SAWADEE domain in complex with H3K9me2 peptide Descriptor: HB transcription factor, Histone H3.2, ZINC ION Authors: Wang, Y, Du, J. Deposit date: 2021-03-20 Release date: 2021-06-30 Last modified: 2023-11-29 Method: X-RAY DIFFRACTION (2.1 Å) Cite: Recognition of H3K9me1 by maize RNA-directed DNA methylation factor SHH2. J Integr Plant Biol, 63, 2021
7PX3	Structure of U5 snRNP assembly and recycling factor TSSC4 in complex with BRR2 and Jab1 domain of PRPF8 Descriptor: Pre-mRNA-processing-splicing factor 8, Protein TSSC4, U5 small nuclear ribonucleoprotein 200 kDa helicase Authors: Bergfort, A, Kuropka, B, Ilik, I.A, Freund, C, Aktas, T, Hilal, T, Weber, G, Wahl, M.C. Deposit date: 2021-10-07 Release date: 2022-01-26 Last modified: 2024-07-17 Method: ELECTRON MICROSCOPY (3.05 Å) Cite: The intrinsically disordered TSSC4 protein acts as a helicase inhibitor, placeholder and multi-interaction coordinator during snRNP assembly and recycling. Nucleic Acids Res., 50, 2022
5YVI	Crystal structure of Karyopherin beta2 in complex with FUS(456-526) Descriptor: RNA-binding protein FUS, Transportin-1 Authors: Yoshizawa, T, Fung, H.Y.J, Chook, Y.M. Deposit date: 2017-11-25 Release date: 2018-05-16 Last modified: 2023-11-22 Method: X-RAY DIFFRACTION (2.9 Å) Cite: Nuclear Import Receptor Inhibits Phase Separation of FUS through Binding to Multiple Sites. Cell, 173, 2018
3T5H	Ternary complex of HNE Adduct modified DNA (5'-CXG-3' vs 13-mer) with Dpo4 and incoming dDGT Descriptor: 2'-DEOXYGUANOSINE-5'-TRIPHOSPHATE, CALCIUM ION, DNA (5'-D(*CP*AP*CP*(HN1)P*GP*AP*AP*TP*CP*CP*TP*TP*CP*CP*CP*CP*C)-3'), ... Authors: Banerjee, S, Christov, P.P, Kozekova, A, Rizzo, C.J, Stone, M.P. Deposit date: 2011-07-27 Release date: 2012-02-15 Last modified: 2024-02-28 Method: X-RAY DIFFRACTION (2.35 Å) Cite: Replication bypass of the trans-4-Hydroxynonenal-derived (6S,8R,11S)-1,N(2)-deoxyguanosine DNA adduct by the sulfolobus solfataricus DNA polymerase IV. Chem.Res.Toxicol., 25, 2012
3JB1	Atomic model of cytoplasmic polyhedrosis virus with SAM Descriptor: Capsid protein VP1, S-ADENOSYLMETHIONINE, Structural protein VP3, ... Authors: Yu, X.K, Jiang, J.S, Sun, J.C, Zhou, Z.H. Deposit date: 2015-07-06 Release date: 2015-08-12 Last modified: 2024-02-21 Method: ELECTRON MICROSCOPY (3.1 Å) Cite: A putative ATPase mediates RNA transcription and capping in a dsRNA virus. Elife, 4, 2015
3JAY	Atomic model of transcribing cytoplasmic polyhedrosis virus Descriptor: ADENOSINE-5'-TRIPHOSPHATE, Capsid protein VP1, GUANOSINE-5'-TRIPHOSPHATE, ... Authors: Yu, X.K, Jiang, J.S, Sun, J.C, Zhou, Z.H. Deposit date: 2015-07-06 Release date: 2015-08-12 Last modified: 2024-02-21 Method: ELECTRON MICROSCOPY (3 Å) Cite: A putative ATPase mediates RNA transcription and capping in a dsRNA virus. Elife, 4, 2015
3JB3	Atomic model of cytoplasmic polyhedrosis virus with SAM, GTP and ATP Descriptor: ADENOSINE-5'-TRIPHOSPHATE, Capsid protein VP1, GUANOSINE-5'-TRIPHOSPHATE, ... Authors: Yu, X.K, Jiang, J.S, Sun, J.C, Zhou, Z.H. Deposit date: 2015-07-06 Release date: 2015-08-12 Last modified: 2024-02-21 Method: ELECTRON MICROSCOPY (3.1 Å) Cite: A putative ATPase mediates RNA transcription and capping in a dsRNA virus. Elife, 4, 2015
3JAZ	Atomic model of cytoplasmic polyhedrosis virus with ATP Descriptor: Capsid protein VP1, Structural protein VP3, Viral structural protein 5 Authors: Yu, X.K, Jiang, J.S, Sun, J.C, Zhou, Z.H. Deposit date: 2015-07-06 Release date: 2015-08-12 Last modified: 2024-02-21 Method: ELECTRON MICROSCOPY (3.1 Å) Cite: A putative ATPase mediates RNA transcription and capping in a dsRNA virus. Elife, 4, 2015
3JB0	Atomic model of cytoplasmic polyhedrosis virus with GTP Descriptor: Capsid protein VP1, GUANOSINE-5'-TRIPHOSPHATE, Structural protein VP3, ... Authors: Yu, X.K, Jiang, J.S, Sun, J.C, Zhou, Z.H. Deposit date: 2015-07-06 Release date: 2015-08-12 Last modified: 2024-02-21 Method: ELECTRON MICROSCOPY (2.9 Å) Cite: A putative ATPase mediates RNA transcription and capping in a dsRNA virus. Elife, 4, 2015
3JB2	Atomic model of cytoplasmic polyhedrosis virus with SAM and GTP Descriptor: Capsid protein VP1, GUANOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, ... Authors: Yu, X.K, Jiang, J.S, Sun, J.C, Zhou, Z.H. Deposit date: 2015-07-06 Release date: 2015-08-12 Last modified: 2024-02-21 Method: ELECTRON MICROSCOPY (3.1 Å) Cite: A putative ATPase mediates RNA transcription and capping in a dsRNA virus. Elife, 4, 2015
3T5L	Ternary complex of HNE Adduct modified DNA (5'-CXG-3' vs 14-mer) with Dpo4 and incoming dDGT Descriptor: 2'-DEOXYGUANOSINE-5'-TRIPHOSPHATE, CALCIUM ION, DNA (5'-D(*CP*AP*CP*(HN0)P*GP*AP*AP*TP*CP*CP*TP*TP*CP*CP*CP*CP*C)-3'), ... Authors: Banerjee, S, Christov, P.P, Kozekova, A, Rizzo, C.J, Stone, M.P. Deposit date: 2011-07-27 Release date: 2012-02-15 Last modified: 2024-02-28 Method: X-RAY DIFFRACTION (2.9 Å) Cite: Replication bypass of the trans-4-Hydroxynonenal-derived (6S,8R,11S)-1,N(2)-deoxyguanosine DNA adduct by the sulfolobus solfataricus DNA polymerase IV. Chem.Res.Toxicol., 25, 2012
3T5K	Ternary complex of HNE Adduct modified DNA (5'-TXG-3' vs 14-mer) with Dpo4 and incoming dDTP Descriptor: 2'-DEOXYADENOSINE 5'-TRIPHOSPHATE, CALCIUM ION, DNA (5'-D(*CP*AP*TP*(HN0)P*GP*AP*AP*TP*CP*CP*TP*TP*CP*CP*CP*CP*C)-3'), ... Authors: Banerjee, S, Christov, P.P, Kozekova, A, Rizzo, C.J, Stone, M.P. Deposit date: 2011-07-27 Release date: 2012-02-15 Last modified: 2024-02-28 Method: X-RAY DIFFRACTION (2.9 Å) Cite: Replication bypass of the trans-4-Hydroxynonenal-derived (6S,8R,11S)-1,N(2)-deoxyguanosine DNA adduct by the sulfolobus solfataricus DNA polymerase IV. Chem.Res.Toxicol., 25, 2012
3T5J	Ternary complex of HNE Adduct modified DNA (5'-TXG-3' vs 13-mer) with Dpo4 and incoming dDTP Descriptor: 2'-DEOXYADENOSINE 5'-TRIPHOSPHATE, CALCIUM ION, DNA (5'-D(*CP*AP*TP*(HN1)P*GP*AP*AP*TP*CP*CP*TP*TP*CP*CP*CP*CP*C)-3'), ... Authors: Banerjee, S, Christov, P.P, Kozekova, A, Rizzo, C.J, Stone, M.P. Deposit date: 2011-07-27 Release date: 2012-02-15 Last modified: 2024-02-28 Method: X-RAY DIFFRACTION (2.4 Å) Cite: Replication bypass of the trans-4-Hydroxynonenal-derived (6S,8R,11S)-1,N(2)-deoxyguanosine DNA adduct by the sulfolobus solfataricus DNA polymerase IV. Chem.Res.Toxicol., 25, 2012
5M48	Coiled coil domain of Rtt103p Descriptor: Regulator of Ty1 transposition protein 103 Authors: Jasnovidova, O, Kalynych, S, Plevka, P, Stefl, R. Deposit date: 2016-10-18 Release date: 2017-10-11 Last modified: 2017-11-08 Method: X-RAY DIFFRACTION (2.593 Å) Cite: Structure and dynamics of the RNAPII CTDsome with Rtt103. Proc. Natl. Acad. Sci. U.S.A., 114, 2017
6W3M	Solution NMR Structure of 5'UTR Stem Loop B in DENV4 Flavivirus. Descriptor: RNA (41-MER) Authors: Sharma, S, Varani, G, Seattle Structural Genomics Center for Infectious Disease (SSGCID) Deposit date: 2020-03-09 Release date: 2020-09-23 Last modified: 2024-05-15 Method: SOLUTION NMR Cite: NMR structure of Dengue West Nile viruses stem-loop B: A key cis-acting element for flavivirus replication. Biochem.Biophys.Res.Commun., 531, 2020
5ZSW	RBM10-RRM2 domain and its lung cancer related mutant Descriptor: RNA-binding protein 10 Authors: Qin, H. Deposit date: 2018-04-30 Release date: 2019-05-22 Last modified: 2024-05-15 Method: SOLUTION NMR Cite: Structural, dynamics, and RNA binding comparison between RBM10-RRM2 domain and its lung cancer related mutation. To be published
6EZ0	Specific phosphorothioate substitution within domain 6 of a group II intron ribozyme leads to changes in local structure and metal ion binding Descriptor: RNA (27-MER) Authors: Erat, M.C, Besic, E, Oberhuber, M, Johannsen, S, Sigel, R.K.O. Deposit date: 2017-11-13 Release date: 2018-01-03 Last modified: 2024-06-19 Method: SOLUTION NMR Cite: Specific phosphorothioate substitution within domain 6 of a group II intron ribozyme leads to changes in local structure and metal ion binding. J. Biol. Inorg. Chem., 23, 2018
5ZSY	RBM10-RRM2 domain and its lung cancer related mutant Descriptor: RNA-binding protein 10 Authors: Qin, H. Deposit date: 2018-04-30 Release date: 2019-06-12 Last modified: 2024-05-15 Method: SOLUTION NMR Cite: Structural, dynamics, and RNA binding comparison between RBM10-RRM2 domain and its lung cancer related mutation. To be published
2MXK	Structural features of a 3' splice site influenza A: 19-nt duplex Descriptor: RNA (5'-R(*GP*CP*AP*GP*GP*CP*CP*CP*A)-3'), RNA (5'-R(*UP*GP*GP*GP*AP*GP*UP*GP*CP*A)-3') Authors: Turner, D.H, Kennedy, S.D, Chen, J.L. Deposit date: 2015-01-06 Release date: 2015-05-06 Last modified: 2024-05-01 Method: SOLUTION NMR Cite: Structural features of a 3' splice site in influenza a. Biochemistry, 54, 2015
5K71	apo Dbr1 Descriptor: RNA lariat debranching enzyme, putative, SULFATE ION Authors: Clark, N.E, Taylor, A.B, Hart, P.J. Deposit date: 2016-05-25 Release date: 2016-12-07 Last modified: 2023-09-27 Method: X-RAY DIFFRACTION (2.57 Å) Cite: The RNA lariat debranching enzyme Dbr1: metal dependence and branched RNA co-crystal structures Proc.Natl.Acad.Sci.USA, 2016

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